Rw1G002840

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000157
Physical Location & Seq
Reverse (-)
5150504 .. 5153400
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002840.1

Sequence Viewer

Length: 747 bp
ATGGAGACAAAATGTCGCTCAACGGATTCCAGATTACAAGACCCACCACTTAAAATCGATCCTTTTGAACCAGATGAACCAAGTTTAGCAAAAGAAATCTACTTTAAAGTAGGTGTGCCTCTACACAATGCTGCTCAAAGAGGTGACTGGAAAGCGGCTAGACGAATCATAAAAAAATATGAGTCTATTTTGCGTGCCCGTATCACGAAAGGCGGGCAGACTGTTCTTCATATTTCTGCAGGAGCTAGACATGTACGATTTGTTAAAAAGTTGCTGAAATTGTTAGACGACCATGACTTAGCTATACAAGATCTAAAAGGGAATACAGCCTTTACTTATGCTGTGGCAGCTGGATCCCGGCGAGTGGCTGAGATGATGATACTGAAAAATCCAAGTCTGCCAACAATTCGTGGTGGTCAAGGAATGTCGACTCTTTATACTGCCGCTGCGTTTGGACGTGGAGACATAGCGTGGCTTCTGTATCCGAAACTCATAAAAGTTATTGACGAAGCAGAACGAACTGGAATATTTTTTACTTTCATCAGCCACAACATGTATGAACTAGCCTTCAGAATTCTGAATGACTACCCGGCCCTTGCATTTGCTCGTGATGACAATCATGAGACAGCCTTACATTTGTTGGCTCAAAAGCCATCAGCATTTTCCACCAAAACTTCAGCAATATGGAGGGTCCTCGTTTACTCATGTAACTATATGAACGCTGCTCACCTAAGGAACAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

248

Amino Acids

27.98

Weight (kDa)

9.67

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 428
AciI CCGC 3 cut(s) 155, 213, 444
AclWI GGATC 3 cut(s) 53, 348, 361
AcsI RAATTY 1 cut(s) 573
AcuI CTGAAG 2 cut(s) 553, 660
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 364
AflIII ACRYGT 2 cut(s) 250, 552
AgsI TTSAA 1 cut(s) 68
AhdI GACNNNNNGTC 1 cut(s) 12
AjiI CACGTC 1 cut(s) 458
AluBI AGCT 3 cut(s) 245, 302, 350
AluI AGCT 3 cut(s) 245, 302, 350
Alw26I GTCTC 2 cut(s) 456, 617
AlwI GGATC 3 cut(s) 53, 348, 361
AoxI GGCC 1 cut(s) 591
ApeKI GCWGC 4 cut(s) 131, 347, 446, 722
ApoI RAATTY 1 cut(s) 573
AspS9I GGNCC 2 cut(s) 592, 691
AsuC2I CCSGG 2 cut(s) 358, 590
AsuHPI GGTGA 2 cut(s) 155, 719
AvaII GGWCC 1 cut(s) 691
AxyI CCTNAGG 1 cut(s) 731
BaeGI GKGCMC 1 cut(s) 199
BamHI GGATCC 1 cut(s) 353
BauI CACGAG 1 cut(s) 606
BbvI GCAGC 4 cut(s) 118, 359, 433, 709
BccI CCATC 1 cut(s) 661
BciVI GTATCC 1 cut(s) 492
BcnI CCSGG 2 cut(s) 358, 590
BcoDI GTCTC 2 cut(s) 456, 617
BfaI CTAG 3 cut(s) 159, 246, 563
BfmI CTRYAG 1 cut(s) 237
BfuI GTATCC 1 cut(s) 492
BglII AGATCT 1 cut(s) 310
BisI GCNGC 6 cut(s) 132, 156, 348, 444, 447, 723
BlsI GCNGC 6 cut(s) 133, 157, 349, 445, 448, 724
Bme1390I CCNGG 2 cut(s) 358, 590
Bme18I GGWCC 1 cut(s) 691
BmeRI GACNNNNNGTC 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 458
BmgT120I GGNCC 2 cut(s) 592, 691
BmiI GGNNCC 2 cut(s) 355, 692
BmrFI CCNGG 2 cut(s) 358, 590
BpuMI CCSGG 2 cut(s) 358, 590
Bsa29I ATCGAT 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 615
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 2 cut(s) 152, 526
Bse21I CCTNAGG 1 cut(s) 731
Bse8I GATNNNNATC 1 cut(s) 615
BseCI ATCGAT 1 cut(s) 57
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 2 cut(s) 152, 526
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 4 cut(s) 118, 359, 433, 709
BshFI GGCC 1 cut(s) 593
BshVI ATCGAT 1 cut(s) 57
BsiSI CCGG 2 cut(s) 358, 590
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 456, 617
BsnI GGCC 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 3 cut(s) 58, 310, 353
BspACI CCGC 3 cut(s) 155, 213, 444
BspANI GGCC 1 cut(s) 593
BspCNI CTCAG 1 cut(s) 361
BspDI ATCGAT 1 cut(s) 57
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 2 cut(s) 355, 692
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 3 cut(s) 53, 348, 361
BsrI ACTGG 2 cut(s) 152, 526
BssMI GATC 3 cut(s) 58, 310, 353
BssSI CACGAG 1 cut(s) 606
Bst2BI CACGAG 1 cut(s) 606
Bst4CI ACNGT 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 195, 215
BstDEI CTNAG 3 cut(s) 298, 369, 731
BstKTI GATC 3 cut(s) 61, 313, 356
BstMAI GTCTC 2 cut(s) 456, 617
BstMBI GATC 3 cut(s) 58, 310, 353
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNSI RCATGY 2 cut(s) 254, 556
BstSCI CCNGG 2 cut(s) 356, 588
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 199
BstV1I GCAGC 4 cut(s) 118, 359, 433, 709
BstX2I RGATCY 2 cut(s) 310, 353
BstYI RGATCY 2 cut(s) 310, 353
Bsu15I ATCGAT 1 cut(s) 57
Bsu36I CCTNAGG 1 cut(s) 731
BsuI GTATCC 1 cut(s) 492
BsuRI GGCC 1 cut(s) 593
BsuTUI ATCGAT 1 cut(s) 57
BtrI CACGTC 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 195, 215
CciI TCATGA 1 cut(s) 619
Cfr13I GGNCC 2 cut(s) 592, 691
ClaI ATCGAT 1 cut(s) 57
Csp6I GTAC 1 cut(s) 254
CviAII CATG 5 cut(s) 251, 293, 553, 620, 705
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 3 cut(s) 298, 369, 731
DpnI GATC 3 cut(s) 60, 312, 355
DpnII GATC 3 cut(s) 58, 310, 353
DraI TTTAAA 1 cut(s) 106
DriI GACNNNNNGTC 1 cut(s) 12
Eam1105I GACNNNNNGTC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 691
Eco57I CTGAAG 2 cut(s) 553, 660
Eco81I CCTNAGG 1 cut(s) 731
EcoO109I RGGNCCY 1 cut(s) 691
EcoRI GAATTC 1 cut(s) 573
FaeI CATG 5 cut(s) 254, 296, 556, 623, 708
FatI CATG 5 cut(s) 250, 292, 552, 619, 704
FauI CCCGC 1 cut(s) 206
FblI GTMKAC 1 cut(s) 428
Fnu4HI GCNGC 6 cut(s) 132, 156, 348, 444, 447, 723
Fsp4HI GCNGC 6 cut(s) 132, 156, 348, 444, 447, 723
FspBI CTAG 3 cut(s) 159, 246, 563
GluI GCNGC 6 cut(s) 132, 156, 348, 444, 447, 723
HaeIII GGCC 1 cut(s) 593
HapII CCGG 2 cut(s) 358, 590
Hin1II CATG 5 cut(s) 254, 296, 556, 623, 708
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HinfI GANTC 4 cut(s) 26, 165, 182, 430
HpaII CCGG 2 cut(s) 358, 590
HphI GGTGA 2 cut(s) 155, 719
Hpy166II GTNNAC 2 cut(s) 429, 700
Hpy188I TCNGA 3 cut(s) 486, 572, 579
Hpy188III TCNNGA 4 cut(s) 30, 205, 608, 620
Hpy8I GTNNAC 2 cut(s) 429, 700
HpyAV CCTTC 1 cut(s) 577
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 457
HpyCH4V TGCA 2 cut(s) 239, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 3 cut(s) 298, 369, 731
HpySE526I ACGT 1 cut(s) 457
Hsp92II CATG 5 cut(s) 254, 296, 556, 623, 708
Kzo9I GATC 3 cut(s) 58, 310, 353
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 8 cut(s) 43, 84, 133, 225, 336, 371, 507, 603
Lsp1109I GCAGC 4 cut(s) 118, 359, 433, 709
MaeI CTAG 3 cut(s) 159, 246, 563
MaeII ACGT 1 cut(s) 457
MaeIII GTNAC 2 cut(s) 143, 707
MalI GATC 3 cut(s) 60, 312, 355
MboI GATC 3 cut(s) 58, 310, 353
MboII GAAGA 1 cut(s) 218
MflI RGATCY 2 cut(s) 310, 353
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 4 cut(s) 278, 405, 573, 739
MlyI GAGTC 2 cut(s) 191, 424
MnlI CCTC 4 cut(s) 129, 134, 681, 704
MseI TTAA 4 cut(s) 51, 105, 264, 745
MspA1I CMGCKG 2 cut(s) 350, 446
MspI CCGG 2 cut(s) 358, 590
MspR9I CCNGG 2 cut(s) 358, 590
MwoI GCNNNNNNNGC 1 cut(s) 347
NciI CCSGG 2 cut(s) 358, 590
NdeII GATC 3 cut(s) 58, 310, 353
NlaIII CATG 5 cut(s) 254, 296, 556, 623, 708
NlaIV GGNNCC 2 cut(s) 355, 692
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 2 cut(s) 254, 556
PagI TCATGA 1 cut(s) 619
PciI ACATGT 2 cut(s) 250, 552
PfeI GAWTC 2 cut(s) 26, 165
PkrI GCNGC 6 cut(s) 133, 157, 349, 445, 448, 724
PleI GAGTC 2 cut(s) 190, 424
PpsI GAGTC 2 cut(s) 190, 424
PpuMI RGGWCCY 1 cut(s) 691
PscI ACATGT 2 cut(s) 250, 552
Psp5II RGGWCCY 1 cut(s) 691
PspN4I GGNNCC 2 cut(s) 355, 692
PspPI GGNCC 2 cut(s) 592, 691
PspPPI RGGWCCY 1 cut(s) 691
PstI CTGCAG 1 cut(s) 241
PsuI RGATCY 2 cut(s) 310, 353
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
SalI GTCGAC 1 cut(s) 427
SaqAI TTAA 4 cut(s) 51, 105, 264, 745
SatI GCNGC 6 cut(s) 132, 156, 348, 444, 447, 723
Sau3AI GATC 3 cut(s) 58, 310, 353
Sau96I GGNCC 2 cut(s) 592, 691
SchI GAGTC 2 cut(s) 191, 424
ScrFI CCNGG 2 cut(s) 358, 590
SduI GDGCHC 1 cut(s) 199
SetI ASST 7 cut(s) 115, 145, 247, 304, 352, 460, 732
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 691
Sse9I AATT 4 cut(s) 278, 405, 573, 739
SsiI CCGC 3 cut(s) 155, 213, 444
SspI AATATT 1 cut(s) 528
SspMI CTAG 3 cut(s) 159, 246, 563
StyD4I CCNGG 2 cut(s) 356, 588
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 1 cut(s) 460
TaqI TCGA 2 cut(s) 57, 428
TasI AATT 4 cut(s) 278, 405, 573, 739
TauI GCSGC 2 cut(s) 158, 446
TfiI GAWTC 2 cut(s) 26, 165
Tru1I TTAA 4 cut(s) 51, 105, 264, 745
Tru9I TTAA 4 cut(s) 51, 105, 264, 745
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 4 cut(s) 131, 347, 446, 722
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 5 cut(s) 90, 218, 529, 573, 731
TspGWI ACGGA 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 691
XapI RAATTY 1 cut(s) 573
XceI RCATGY 2 cut(s) 254, 556
XmiI GTMKAC 1 cut(s) 428
XspI CTAG 3 cut(s) 159, 246, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.