Rh5DG323300

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000157
Physical Location & Seq
Reverse (-)
42226958 .. 42232121
5164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG323300.1

Sequence Viewer

Length: 798 bp
ATGTCTAGCCCACAAGCACACAATTCTGTACCGCCTGGAATTCAATTGATGGCTACTGGAAATGGAGATCCAATAGCAACAGCACATTACGTCATCAACATTCGCTCAACACCTTCGGATCTTTTTCTACAGAACGACAATAGAGAGCTATACCTTAATACATGTGTGCCACTCAATAAGTATGCACTAAAAGGCAATTGGGAAGCTGCTGAACGAATTTTGAGGAACGATCCAAGGCTTTTGACTTATAGCATAACAAGAGGATGGGACACTGTCCTTCACATTGCAGCAGGGGCAAGACATGTTCACTTTGTGGAGAAGCTGGTAGAAATGATGGAAGAATTGAATGGACAGGAGAAATGTTCACAAGACTTGGCACTGCAAGACATGAATGGAAACACTGCCTTCAGCATTGCTGCTGCAGCTGGAAGTATTGAAATTGCACAGATTATGATGAAGAAGAATAAGTATTTGCCAGTAATTCGAGGCGGTGAAGGAATGACACCACTCTATATGGCCGCCTTGTTGGGGCAGTCTGTAATGGCAGATAACCTGTACTCTAGAACCAAGGAAATGTTAGAGGAAGCCGACCGACAAGCGTTGTTTTTTACTTGTATCGATAATGGTTTGTATGATCTAGCTATGAAGATGCTAAGAAGTGATAGAGCATTAGCTAAGGCTCGTAATGCAAAACAAGAAACAGCTTTGCATATCTTGGCTAGAACGCCTTCAGAATTCACCAGCCAAAGTCCAGGAATGTGGAGTAGACTCATCAACTCATGTGAGTTGGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

265

Amino Acids

29.46

Weight (kDa)

6.31

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 62 - 154 4.7e-07 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 766
AciI CCGC 3 cut(s) 32, 489, 519
AclWI GGATC 3 cut(s) 62, 126, 224
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 3 cut(s) 39, 216, 734
AcuI CTGAAG 2 cut(s) 391, 714
AdeI CACNNNGTG 1 cut(s) 313
AfaI GTAC 2 cut(s) 30, 557
AfiI CCNNNNNNNGG 1 cut(s) 528
AflIII ACRYGT 2 cut(s) 161, 301
AgsI TTSAA 3 cut(s) 44, 346, 437
AjnI CCWGG 2 cut(s) 34, 751
AluBI AGCT 7 cut(s) 148, 206, 322, 425, 641, 674, 704
AluI AGCT 7 cut(s) 148, 206, 322, 425, 641, 674, 704
AlwI GGATC 3 cut(s) 62, 126, 224
AoxI GGCC 1 cut(s) 516
ApeKI GCWGC 5 cut(s) 206, 287, 416, 419, 422
ApoI RAATTY 3 cut(s) 39, 216, 734
Asp700I GAANNNNTTC 1 cut(s) 727
AsuHPI GGTGA 2 cut(s) 503, 730
BbvI GCAGC 5 cut(s) 193, 299, 403, 406, 434
BccI CCATC 3 cut(s) 43, 258, 328
BciT130I CCWGG 2 cut(s) 36, 753
BfaI CTAG 4 cut(s) 6, 561, 638, 720
BfmI CTRYAG 2 cut(s) 128, 420
BisI GCNGC 6 cut(s) 207, 288, 417, 420, 423, 519
BlsI GCNGC 6 cut(s) 208, 289, 418, 421, 424, 520
Bme1390I CCNGG 2 cut(s) 36, 753
BmrFI CCNGG 2 cut(s) 36, 753
BmsI GCATC 1 cut(s) 639
Bpu10I CCTNAGC 1 cut(s) 675
Bsa29I ATCGAT 1 cut(s) 618
BsaJI CCNNGG 2 cut(s) 233, 567
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse1I ACTGG 2 cut(s) 61, 476
Bse3DI GCAATG 2 cut(s) 282, 411
BseBI CCWGG 2 cut(s) 36, 753
BseCI ATCGAT 1 cut(s) 618
BseDI CCNNGG 2 cut(s) 233, 567
BseGI GGATG 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMI GCAATG 2 cut(s) 282, 411
BseNI ACTGG 2 cut(s) 61, 476
BseXI GCAGC 5 cut(s) 193, 299, 403, 406, 434
Bsh1285I CGRYCG 1 cut(s) 592
BshFI GGCC 1 cut(s) 518
BshVI ATCGAT 1 cut(s) 618
BsiEI CGRYCG 1 cut(s) 592
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 528
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 1 cut(s) 518
Bsp143I GATC 4 cut(s) 67, 118, 229, 634
BspACI CCGC 3 cut(s) 32, 489, 519
BspANI GGCC 1 cut(s) 518
BspDI ATCGAT 1 cut(s) 618
BspMAI CTGCAG 1 cut(s) 424
BspPI GGATC 3 cut(s) 62, 126, 224
BsrDI GCAATG 2 cut(s) 282, 411
BsrI ACTGG 2 cut(s) 61, 476
BssECI CCNNGG 2 cut(s) 233, 567
BssMI GATC 4 cut(s) 67, 118, 229, 634
BssT1I CCWWGG 2 cut(s) 233, 567
Bst2UI CCWGG 2 cut(s) 36, 753
Bst4CI ACNGT 1 cut(s) 274
BstDEI CTNAG 2 cut(s) 653, 675
BstF5I GGATG 1 cut(s) 269
BstKTI GATC 4 cut(s) 70, 121, 232, 637
BstMBI GATC 4 cut(s) 67, 118, 229, 634
BstMCI CGRYCG 1 cut(s) 592
BstMWI GCNNNNNNNGC 3 cut(s) 293, 422, 686
BstNI CCWGG 2 cut(s) 36, 753
BstNSI RCATGY 2 cut(s) 165, 305
BstSCI CCNGG 2 cut(s) 34, 751
BstSFI CTRYAG 2 cut(s) 128, 420
BstV1I GCAGC 5 cut(s) 193, 299, 403, 406, 434
BstX2I RGATCY 2 cut(s) 67, 118
BstXI CCANNNNNNTGG 1 cut(s) 759
BstYI RGATCY 2 cut(s) 67, 118
Bsu15I ATCGAT 1 cut(s) 618
BsuRI GGCC 1 cut(s) 518
BsuTUI ATCGAT 1 cut(s) 618
BtsCI GGATG 1 cut(s) 269
BtsI GCAGTG 2 cut(s) 377, 399
BtsIMutI CAGTG 3 cut(s) 270, 377, 399
ClaI ATCGAT 1 cut(s) 618
Csp6I GTAC 2 cut(s) 29, 556
CviAII CATG 4 cut(s) 162, 302, 388, 780
CviQI GTAC 2 cut(s) 29, 556
DdeI CTNAG 2 cut(s) 653, 675
DpnI GATC 4 cut(s) 69, 120, 231, 636
DpnII GATC 4 cut(s) 67, 118, 229, 634
DraIII CACNNNGTG 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 516
Eco130I CCWWGG 2 cut(s) 233, 567
Eco57I CTGAAG 2 cut(s) 391, 714
EcoRI GAATTC 2 cut(s) 39, 734
EcoRII CCWGG 2 cut(s) 34, 751
EcoT14I CCWWGG 2 cut(s) 233, 567
ErhI CCWWGG 2 cut(s) 233, 567
FaeI CATG 4 cut(s) 165, 305, 391, 783
FaqI GGGAC 1 cut(s) 281
FatI CATG 4 cut(s) 161, 301, 387, 779
FblI GTMKAC 1 cut(s) 766
Fnu4HI GCNGC 6 cut(s) 207, 288, 417, 420, 423, 519
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 6 cut(s) 207, 288, 417, 420, 423, 519
FspBI CTAG 4 cut(s) 6, 561, 638, 720
GluI GCNGC 6 cut(s) 207, 288, 417, 420, 423, 519
HaeIII GGCC 1 cut(s) 518
Hin1II CATG 4 cut(s) 165, 305, 391, 783
HinfI GANTC 1 cut(s) 768
HphI GGTGA 2 cut(s) 503, 730
Hpy166II GTNNAC 3 cut(s) 307, 365, 767
Hpy188I TCNGA 2 cut(s) 118, 733
Hpy188III TCNNGA 1 cut(s) 561
Hpy8I GTNNAC 3 cut(s) 307, 365, 767
HpyAV CCTTC 5 cut(s) 123, 287, 415, 488, 738
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 7 cut(s) 185, 287, 382, 422, 443, 689, 709
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 422, 686
HpyF3I CTNAG 2 cut(s) 653, 675
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 4 cut(s) 165, 305, 391, 783
Kzo9I GATC 4 cut(s) 67, 118, 229, 634
Lsp1109I GCAGC 5 cut(s) 193, 299, 403, 406, 434
LweI GCATC 1 cut(s) 639
MaeI CTAG 4 cut(s) 6, 561, 638, 720
MaeII ACGT 1 cut(s) 90
MalI GATC 4 cut(s) 69, 120, 231, 636
MboI GATC 4 cut(s) 67, 118, 229, 634
MboII GAAGA 4 cut(s) 350, 469, 472, 658
MfeI CAATTG 2 cut(s) 44, 196
MflI RGATCY 2 cut(s) 67, 118
MluCI AATT 9 cut(s) 22, 39, 44, 196, 216, 341, 438, 480, 734
MlyI GAGTC 1 cut(s) 762
MnlI CCTC 4 cut(s) 216, 254, 479, 574
MroXI GAANNNNTTC 1 cut(s) 727
MseI TTAA 2 cut(s) 156, 796
MspA1I CMGCKG 1 cut(s) 425
MspR9I CCNGG 2 cut(s) 36, 753
MunI CAATTG 2 cut(s) 44, 196
MvaI CCWGG 2 cut(s) 36, 753
MwoI GCNNNNNNNGC 3 cut(s) 293, 422, 686
NdeII GATC 4 cut(s) 67, 118, 229, 634
NlaIII CATG 4 cut(s) 165, 305, 391, 783
NspI RCATGY 2 cut(s) 165, 305
PciI ACATGT 2 cut(s) 161, 301
PdmI GAANNNNTTC 1 cut(s) 727
PflFI GACNNNGTC 1 cut(s) 272
PfoI TCCNGGA 1 cut(s) 751
PkrI GCNGC 6 cut(s) 208, 289, 418, 421, 424, 520
PleI GAGTC 1 cut(s) 762
PpsI GAGTC 1 cut(s) 762
PscI ACATGT 2 cut(s) 161, 301
Psp6I CCWGG 2 cut(s) 34, 751
PspGI CCWGG 2 cut(s) 34, 751
PstI CTGCAG 1 cut(s) 424
PsuI RGATCY 2 cut(s) 67, 118
PsyI GACNNNGTC 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 30, 557
RsaNI GTAC 2 cut(s) 29, 556
SaqAI TTAA 2 cut(s) 156, 796
SatI GCNGC 6 cut(s) 207, 288, 417, 420, 423, 519
Sau3AI GATC 4 cut(s) 67, 118, 229, 634
SchI GAGTC 1 cut(s) 762
ScrFI CCNGG 2 cut(s) 36, 753
SfaNI GCATC 1 cut(s) 639
SfcI CTRYAG 2 cut(s) 128, 420
Sse9I AATT 9 cut(s) 22, 39, 44, 196, 216, 341, 438, 480, 734
SsiI CCGC 3 cut(s) 32, 489, 519
SspMI CTAG 4 cut(s) 6, 561, 638, 720
StyD4I CCNGG 2 cut(s) 34, 751
StyI CCWWGG 2 cut(s) 233, 567
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 484, 618
TaqII GACCGA 1 cut(s) 606
TasI AATT 9 cut(s) 22, 39, 44, 196, 216, 341, 438, 480, 734
TatI WGTACW 1 cut(s) 555
TauI GCSGC 1 cut(s) 521
Tru1I TTAA 2 cut(s) 156, 796
Tru9I TTAA 2 cut(s) 156, 796
TscAI CASTG 3 cut(s) 277, 384, 406
TseI GCWGC 5 cut(s) 206, 287, 416, 419, 422
TspDTI ATGAA 3 cut(s) 404, 470, 659
TspRI CASTG 3 cut(s) 277, 384, 406
Tth111I GACNNNGTC 1 cut(s) 272
XapI RAATTY 3 cut(s) 39, 216, 734
XbaI TCTAGA 1 cut(s) 560
XceI RCATGY 2 cut(s) 165, 305
XmiI GTMKAC 1 cut(s) 766
XmnI GAANNNNTTC 1 cut(s) 727
XspI CTAG 4 cut(s) 6, 561, 638, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.