RchiOBHm_Chr1g0316401

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000157
Physical Location & Seq
Forward (+)
3770333 .. 3772573
2241 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54683

Sequence Viewer

Length: 741 bp
ATGTATACAGACTCGGATGAAATGAAACAATCATGCAATCGTCTGTATAAAGCTGCTGTAAAAGGTGACTGGATAATGGCAAAACAAATCATAAACGAAGATGAGACCAACAGCATATTAGGTCTGAATATTACATATGGAAAGTACACCACACTTCATGTTGCAGCCGGAGCGCCACATGTTCACTTTGTGAATCAATTGCTGGAAATGATGGCCACGCGGCCAGAATACCGAAAATATCTCTTGCGACTAAAAGATGGAAGAGGTAATACTGCCTTCTGTTTAGCTGCGGCTGCTGGATCTATAGAAATTATTAAAACTATGATGGCACATGATCCAAGCCTGCAAGGAAGATTGGGTGGGGAAGGAAAGACGCCACTCTACATGGCTACTTTGTTTGGACATGAGCAAATGGCCTCGTACCTGTATGGGCTGTATGTTGAACCGGTACCTCGAGGAGAAGATCTGCTTGGGGTATTTTTCAGTTGCATAAATACTGGTCTCTATGGAAAAAGTCATCGGAGACTTCACCGGAAACCTCACTGGAGGTCTTCAAAGAGGTCGTCGGAGACCTCCAGTAAGTTTCACTATGAAAATATAAATTTTATTTTTACTGCCTCCAATAAATTTTTATTGGAATTTTTATTGCCCTCTAATAAAAGTTTTATTGAGGGTCAACAATCACTAACTTGTGTTTTCCTCTTCATTGAAATGATTCTTTGTTTTATTAAGGGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

246

Amino Acids

27.95

Weight (kDa)

9.0

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 83 - 143 1.2e-07 Ankyrin repeats (3 copies)
Ank_4 PF13637 95 - 142 6.6e-06 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 453
Acc65I GGTACC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 448
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 220
AciI CCGC 2 cut(s) 220, 290
AclWI GGATC 2 cut(s) 307, 329
AcoI YGGCCR 2 cut(s) 213, 221
AcsI RAATTY 3 cut(s) 601, 626, 638
AcyI GRCGYC 1 cut(s) 374
AdeI CACNNNGTG 1 cut(s) 190
AfaI GTAC 3 cut(s) 146, 422, 450
AflIII ACRYGT 1 cut(s) 178
AgeI ACCGGT 1 cut(s) 445
AgsI TTSAA 3 cut(s) 443, 555, 710
AjuI GAANNNNNNNTTGG 2 cut(s) 453, 485
AluBI AGCT 2 cut(s) 53, 287
AluI AGCT 2 cut(s) 53, 287
Alw26I GTCTC 4 cut(s) 98, 506, 517, 563
AlwI GGATC 2 cut(s) 307, 329
Ama87I CYCGRG 1 cut(s) 453
AoxI GGCC 3 cut(s) 213, 221, 414
ApeKI GCWGC 4 cut(s) 53, 164, 287, 293
ApoI RAATTY 3 cut(s) 601, 626, 638
ArsI GACNNNNNNTTYG 2 cut(s) 548, 580
AsiGI ACCGGT 1 cut(s) 445
Asp700I GAANNNNTTC 1 cut(s) 714
Asp718I GGTACC 1 cut(s) 448
AspLEI GCGC 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 77, 521
AvaI CYCGRG 1 cut(s) 453
BalI TGGCCA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 448
BarI GAAGNNNNNNTAC 2 cut(s) 253, 285
BbsI GAAGAC 1 cut(s) 543
BbvI GCAGC 4 cut(s) 40, 176, 274, 280
BccI CCATC 3 cut(s) 205, 251, 319
BcoDI GTCTC 4 cut(s) 98, 506, 517, 563
BfmI CTRYAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 176
BglII AGATCT 1 cut(s) 463
BisI GCNGC 6 cut(s) 54, 165, 221, 288, 291, 294
BlsI GCNGC 6 cut(s) 55, 166, 222, 289, 292, 295
BmeT110I CYCGRG 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 450
BpiI GAAGAC 1 cut(s) 543
BpmI CTGGAG 2 cut(s) 559, 565
BsaHI GRCGYC 1 cut(s) 374
BsaI GGTCTC 3 cut(s) 98, 506, 563
BsaWI WCCGGW 2 cut(s) 445, 531
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 4 cut(s) 74, 502, 548, 576
BseGI GGATG 1 cut(s) 22
BseNI ACTGG 4 cut(s) 74, 502, 548, 576
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 4 cut(s) 40, 176, 274, 280
Bsh1236I CGCG 1 cut(s) 220
BshFI GGCC 3 cut(s) 215, 223, 416
BshNI GGYRCC 1 cut(s) 448
BshTI ACCGGT 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 453
BsiSI CCGG 3 cut(s) 168, 446, 532
BsmAI GTCTC 4 cut(s) 98, 506, 517, 563
BsnI GGCC 3 cut(s) 215, 223, 416
Bso31I GGTCTC 3 cut(s) 98, 506, 563
BsoBI CYCGRG 1 cut(s) 453
Bsp143I GATC 3 cut(s) 299, 334, 463
BspACI CCGC 2 cut(s) 220, 290
BspANI GGCC 3 cut(s) 215, 223, 416
BspFNI CGCG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 450
BspPI GGATC 2 cut(s) 307, 329
BspT107I GGYRCC 1 cut(s) 448
BspTNI GGTCTC 3 cut(s) 98, 506, 563
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 4 cut(s) 74, 502, 548, 576
BssAI RCCGGY 1 cut(s) 445
BssMI GATC 3 cut(s) 299, 334, 463
BssNAI GTATAC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 374
Bst1107I GTATAC 1 cut(s) 6
Bst6I CTCTTC 2 cut(s) 256, 707
BstACI GRCGYC 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 344
BstF5I GGATG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 220
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 3 cut(s) 302, 337, 466
BstMAI GTCTC 4 cut(s) 98, 506, 517, 563
BstMBI GATC 3 cut(s) 299, 334, 463
BstMWI GCNNNNNNNGC 2 cut(s) 170, 293
BstNSI RCATGY 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 303
BstUI CGCG 1 cut(s) 220
BstV1I GCAGC 4 cut(s) 40, 176, 274, 280
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 2 cut(s) 299, 463
BstYI RGATCY 2 cut(s) 299, 463
BstZ17I GTATAC 1 cut(s) 6
BsuRI GGCC 3 cut(s) 215, 223, 416
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 344
CfoI GCGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 445
CseI GACGC 1 cut(s) 382
Csp6I GTAC 3 cut(s) 145, 421, 449
CspAI ACCGGT 1 cut(s) 445
CviAII CATG 6 cut(s) 33, 158, 179, 332, 385, 404
CviQI GTAC 3 cut(s) 145, 421, 449
DpnI GATC 3 cut(s) 301, 336, 465
DpnII GATC 3 cut(s) 299, 334, 463
DraIII CACNNNGTG 1 cut(s) 190
EaeI YGGCCR 2 cut(s) 213, 221
Eam1104I CTCTTC 2 cut(s) 256, 707
EarI CTCTTC 2 cut(s) 256, 707
Eco31I GGTCTC 3 cut(s) 98, 506, 563
Eco88I CYCGRG 1 cut(s) 453
FaeI CATG 6 cut(s) 36, 161, 182, 335, 388, 407
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FatI CATG 6 cut(s) 32, 157, 178, 331, 384, 403
FauNDI CATATG 1 cut(s) 136
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 6 cut(s) 54, 165, 221, 288, 291, 294
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 6 cut(s) 54, 165, 221, 288, 291, 294
GlaI GCGC 1 cut(s) 174
GluI GCNGC 6 cut(s) 54, 165, 221, 288, 291, 294
GsuI CTGGAG 2 cut(s) 559, 565
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 3 cut(s) 215, 223, 416
HapII CCGG 3 cut(s) 168, 446, 532
HgaI GACGC 1 cut(s) 382
HhaI GCGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 6 cut(s) 36, 161, 182, 335, 388, 407
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 677
HindII GTYRAC 1 cut(s) 677
HinfI GANTC 3 cut(s) 11, 193, 715
HpaII CCGG 3 cut(s) 168, 446, 532
HphI GGTGA 2 cut(s) 77, 521
Hpy166II GTNNAC 4 cut(s) 6, 147, 184, 677
Hpy188I TCNGA 4 cut(s) 16, 126, 522, 568
Hpy8I GTNNAC 4 cut(s) 6, 147, 184, 677
Hpy99I CGWCG 1 cut(s) 568
HpyAV CCTTC 2 cut(s) 286, 359
HpyCH4V TGCA 4 cut(s) 36, 164, 346, 489
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 293
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 6 cut(s) 36, 161, 182, 335, 388, 407
HspAI GCGC 1 cut(s) 173
KpnI GGTACC 1 cut(s) 452
Kzo9I GATC 3 cut(s) 299, 334, 463
LmnI GCTCC 1 cut(s) 170
Lsp1109I GCAGC 4 cut(s) 40, 176, 274, 280
MaeIII GTNAC 1 cut(s) 65
MalI GATC 3 cut(s) 301, 336, 465
MboI GATC 3 cut(s) 299, 334, 463
MboII GAAGA 6 cut(s) 110, 273, 363, 473, 543, 694
MfeI CAATTG 1 cut(s) 197
MflI RGATCY 2 cut(s) 299, 463
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 5 cut(s) 197, 309, 601, 626, 638
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 546
Mox20I TGGCCA 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 714
MscI TGGCCA 1 cut(s) 215
MseI TTAA 2 cut(s) 315, 729
MslI CAYNNNNRTG 1 cut(s) 710
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 3 cut(s) 168, 446, 532
MunI CAATTG 1 cut(s) 197
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 170, 293
NdeI CATATG 1 cut(s) 136
NdeII GATC 3 cut(s) 299, 334, 463
NlaIII CATG 6 cut(s) 36, 161, 182, 335, 388, 407
NlaIV GGNNCC 1 cut(s) 450
NmuCI GTSAC 1 cut(s) 65
NspI RCATGY 1 cut(s) 182
PaeR7I CTCGAG 1 cut(s) 453
PciI ACATGT 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 714
PfeI GAWTC 2 cut(s) 193, 715
PinAI ACCGGT 1 cut(s) 445
PkrI GCNGC 6 cut(s) 55, 166, 222, 289, 292, 295
PleI GAGTC 1 cut(s) 5
PpsI GAGTC 1 cut(s) 5
PscI ACATGT 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 450
PspXI VCTCGAGB 1 cut(s) 453
PsuI RGATCY 2 cut(s) 299, 463
RsaI GTAC 3 cut(s) 146, 422, 450
RsaNI GTAC 3 cut(s) 145, 421, 449
RseI CAYNNNNRTG 1 cut(s) 710
SaqAI TTAA 2 cut(s) 315, 729
SatI GCNGC 6 cut(s) 54, 165, 221, 288, 291, 294
Sau3AI GATC 3 cut(s) 299, 334, 463
SchI GAGTC 1 cut(s) 5
SfcI CTRYAG 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 453
SlaI CTCGAG 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
Sse9I AATT 5 cut(s) 197, 309, 601, 626, 638
SsiI CCGC 2 cut(s) 220, 290
SspI AATATT 1 cut(s) 130
TaqI TCGA 1 cut(s) 454
TasI AATT 5 cut(s) 197, 309, 601, 626, 638
TatI WGTACW 1 cut(s) 144
TauI GCSGC 2 cut(s) 223, 293
TfiI GAWTC 2 cut(s) 193, 715
Tru1I TTAA 2 cut(s) 315, 729
Tru9I TTAA 2 cut(s) 315, 729
TscAI CASTG 1 cut(s) 548
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 4 cut(s) 53, 164, 287, 293
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 5 cut(s) 33, 38, 146, 606, 694
TspRI CASTG 1 cut(s) 548
XapI RAATTY 3 cut(s) 601, 626, 638
XceI RCATGY 1 cut(s) 182
XhoI CTCGAG 1 cut(s) 453
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.