RchiOBHm_Chr5g0045371

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000157
Physical Location & Seq
Reverse (-)
41326431 .. 41327612
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32347

Sequence Viewer

Length: 846 bp
ATGTTGCTTATGTTCTTCAACTTTTCATCTCAAGTACTCCCAGGTTTGAAGTTTGCATGCAAAACAAAGTTGAAAGAAGCTAATGGAGCCCTTCAGCTAGTCTGCCGCCTCTGGGAAGAAATCTTGAGAGACGAGCATGATAACGTGATGAGGCTGATCAAATTTCCAACAAACTTGCTATTTGACGCAGCAGAATTAGGGAATTATGACGCAGGTATCTTCAATCTAGTGCATGAGATAGGTTCAATCAGGGATGTCATAGTGACATATAAGGATCATCAGGGTAACAATATTGTGCATATGGCTGCAAAATTAGCACCTCAAAATCAACTAAATCTCGTGTCAGGCGTAGCTCTTCAAATGCAGCGAGAGTTAGTATGGTTTGAGGAAGTCAAAACAATTGTCCAACCTCAATACATAGAGATGGAAAACAACCAAGGAAAAACTCCTCAAGAATTATTCACTGAAGAGCATATGGTGTTAATGCGTCGAGGAGAAAAATGGATGAAGGTTACCGCAACTTCATGTATGCTAGTTGCAACTATTATCGCAACCGTTGTGTTCTCAGCTGCATTTAGCATACCTGGTGGCATAGATGATCATACCGGAAAGCCAAACTTTTTGAAAAAGAAGGCCTTTCTAGACTTTACCATAGCTGATGAAGTAGCACTCTTGTCCTCTTCAACTGCAATGCTGATGTTCTTGTTCATCCTTACCTCGCGGTATGCAGAAAATGATTTCCTCAAGTCCTTGCCCTTGAAGTTGATGGTAGGACTCACTTGCCTTTTCATCTCTATAGCATCTATGATGATGGCCTTTAGCACTGCGTTATATTTGTCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

281

Amino Acids

31.68

Weight (kDa)

6.09

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 166 - 279 2.3e-26 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 203
AccII CGCG 1 cut(s) 721
AciI CCGC 3 cut(s) 106, 516, 721
AclWI GGATC 1 cut(s) 282
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 2 cut(s) 77, 486
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 9 cut(s) 19, 49, 73, 223, 246, 359, 625, 684, 760
AjnI CCWGG 2 cut(s) 40, 583
AluBI AGCT 5 cut(s) 80, 97, 353, 569, 656
AluI AGCT 5 cut(s) 80, 97, 353, 569, 656
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 282
AoxI GGCC 2 cut(s) 633, 813
ApeKI GCWGC 4 cut(s) 188, 305, 364, 569
ApoI RAATTY 1 cut(s) 161
ArsI GACNNNNNNTTYG 2 cut(s) 387, 419
BaeI ACNNNNGTAYC 2 cut(s) 199, 232
BanII GRGCYC 1 cut(s) 91
BauI CACGAG 1 cut(s) 338
BbvI GCAGC 4 cut(s) 200, 292, 376, 556
BccI CCATC 3 cut(s) 418, 760, 805
BciT130I CCWGG 2 cut(s) 42, 585
BclI TGATCA 2 cut(s) 156, 598
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 4 cut(s) 98, 227, 533, 641
BfmI CTRYAG 1 cut(s) 795
BfuAI ACCTGC 1 cut(s) 203
BisI GCNGC 5 cut(s) 106, 189, 306, 365, 570
BlsI GCNGC 5 cut(s) 107, 190, 307, 366, 571
BmcAI AGTACT 1 cut(s) 36
Bme1390I CCNGG 2 cut(s) 42, 585
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 42, 585
BmsI GCATC 1 cut(s) 809
BpuEI CTTGAG 4 cut(s) 15, 145, 435, 728
BsaJI CCNNGG 2 cut(s) 40, 436
BsaWI WCCGGW 1 cut(s) 605
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 2 cut(s) 42, 585
BseDI CCNNGG 2 cut(s) 40, 436
BseGI GGATG 3 cut(s) 259, 510, 708
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 1 cut(s) 579
BseRI GAGGAG 2 cut(s) 438, 507
BseXI GCAGC 4 cut(s) 200, 292, 376, 556
Bsh1236I CGCG 1 cut(s) 721
BshFI GGCC 2 cut(s) 635, 815
BsiSI CCGG 1 cut(s) 606
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
BsnI GGCC 2 cut(s) 635, 815
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 3 cut(s) 156, 274, 598
BspACI CCGC 3 cut(s) 106, 516, 721
BspANI GGCC 2 cut(s) 635, 815
BspCNI CTCAG 1 cut(s) 578
BspFNI CGCG 1 cut(s) 721
BspLI GGNNCC 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 203
BspPI GGATC 1 cut(s) 282
BspQI GCTCTTC 2 cut(s) 360, 462
BsrDI GCAATG 1 cut(s) 696
BssECI CCNNGG 2 cut(s) 40, 436
BssMI GATC 3 cut(s) 156, 274, 598
BssSI CACGAG 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 436
Bst2BI CACGAG 1 cut(s) 338
Bst2UI CCWGG 2 cut(s) 42, 585
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 3 cut(s) 360, 462, 685
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 565
BstEII GGTNACC 1 cut(s) 511
BstF5I GGATG 3 cut(s) 259, 510, 708
BstFNI CGCG 1 cut(s) 721
BstKTI GATC 3 cut(s) 159, 277, 601
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 3 cut(s) 156, 274, 598
BstMWI GCNNNNNNNGC 2 cut(s) 86, 314
BstNI CCWGG 2 cut(s) 42, 585
BstNSI RCATGY 1 cut(s) 60
BstPI GGTNACC 1 cut(s) 511
BstSCI CCNGG 2 cut(s) 40, 583
BstSFI CTRYAG 1 cut(s) 795
BstUI CGCG 1 cut(s) 721
BstV1I GCAGC 4 cut(s) 200, 292, 376, 556
BsuRI GGCC 2 cut(s) 635, 815
BtsCI GGATG 3 cut(s) 259, 510, 708
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 2 cut(s) 462, 822
BveI ACCTGC 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 58
CseI GACGC 3 cut(s) 194, 218, 476
CsiI ACCWGGT 1 cut(s) 583
Csp6I GTAC 1 cut(s) 35
CviAII CATG 4 cut(s) 57, 137, 233, 525
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 1 cut(s) 565
DpnI GATC 3 cut(s) 158, 276, 600
DpnII GATC 3 cut(s) 156, 274, 598
Eam1104I CTCTTC 3 cut(s) 360, 462, 685
EarI CTCTTC 3 cut(s) 360, 462, 685
Eco130I CCWWGG 1 cut(s) 436
Eco147I AGGCCT 1 cut(s) 635
Eco24I GRGCYC 1 cut(s) 91
Eco57I CTGAAG 2 cut(s) 77, 486
Eco91I GGTNACC 1 cut(s) 511
EcoO65I GGTNACC 1 cut(s) 511
EcoRII CCWGG 2 cut(s) 40, 583
EcoT14I CCWWGG 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 4 cut(s) 60, 140, 236, 528
FalI AAGNNNNNCTT 4 cut(s) 602, 634, 620, 652
FatI CATG 4 cut(s) 56, 136, 232, 524
FauNDI CATATG 2 cut(s) 300, 474
FbaI TGATCA 2 cut(s) 156, 598
Fnu4HI GCNGC 5 cut(s) 106, 189, 306, 365, 570
FokI GGATG 3 cut(s) 266, 517, 695
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 5 cut(s) 106, 189, 306, 365, 570
FspBI CTAG 4 cut(s) 98, 227, 533, 641
GluI GCNGC 5 cut(s) 106, 189, 306, 365, 570
HaeIII GGCC 2 cut(s) 635, 815
HapII CCGG 1 cut(s) 606
HgaI GACGC 3 cut(s) 194, 218, 476
Hin1II CATG 4 cut(s) 60, 140, 236, 528
HinfI GANTC 1 cut(s) 774
HpaII CCGG 1 cut(s) 606
Hpy188III TCNNGA 3 cut(s) 124, 452, 641
Hpy99I CGWCG 1 cut(s) 492
HpyAV CCTTC 3 cut(s) 101, 502, 625
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 314
HpyF3I CTNAG 1 cut(s) 565
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 4 cut(s) 60, 140, 236, 528
Ksp22I TGATCA 2 cut(s) 156, 598
Kzo9I GATC 3 cut(s) 156, 274, 598
LguI GCTCTTC 2 cut(s) 360, 462
LmnI GCTCC 1 cut(s) 86
Lsp1109I GCAGC 4 cut(s) 200, 292, 376, 556
LweI GCATC 1 cut(s) 809
MabI ACCWGGT 1 cut(s) 583
MaeI CTAG 4 cut(s) 98, 227, 533, 641
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 262, 284, 511
MalI GATC 3 cut(s) 158, 276, 600
MboI GATC 3 cut(s) 156, 274, 598
MboII GAAGA 6 cut(s) 7, 128, 211, 347, 479, 672
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 6 cut(s) 161, 194, 202, 311, 399, 455
MlyI GAGTC 1 cut(s) 768
MmeI TCCRAC 2 cut(s) 191, 430
MseI TTAA 2 cut(s) 482, 844
MslI CAYNNNNRTG 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 1 cut(s) 606
MspR9I CCNGG 2 cut(s) 42, 585
MunI CAATTG 1 cut(s) 399
MvaI CCWGG 2 cut(s) 42, 585
MvnI CGCG 1 cut(s) 721
MwoI GCNNNNNNNGC 2 cut(s) 86, 314
NdeI CATATG 2 cut(s) 300, 474
NdeII GATC 3 cut(s) 156, 274, 598
NlaIII CATG 4 cut(s) 60, 140, 236, 528
NlaIV GGNNCC 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 1 cut(s) 60
PaeI GCATGC 1 cut(s) 60
PceI AGGCCT 1 cut(s) 635
PciSI GCTCTTC 2 cut(s) 360, 462
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PkrI GCNGC 5 cut(s) 107, 190, 307, 366, 571
PleI GAGTC 1 cut(s) 768
PpsI GAGTC 1 cut(s) 768
Psp6I CCWGG 2 cut(s) 40, 583
PspEI GGTNACC 1 cut(s) 511
PspGI CCWGG 2 cut(s) 40, 583
PspN4I GGNNCC 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 569
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 422
SapI GCTCTTC 2 cut(s) 360, 462
SaqAI TTAA 2 cut(s) 482, 844
SatI GCNGC 5 cut(s) 106, 189, 306, 365, 570
Sau3AI GATC 3 cut(s) 156, 274, 598
ScaI AGTACT 1 cut(s) 36
SchI GAGTC 1 cut(s) 768
ScrFI CCNGG 2 cut(s) 42, 585
SduI GDGCHC 1 cut(s) 91
SexAI ACCWGGT 1 cut(s) 583
SfaNI GCATC 1 cut(s) 809
SfcI CTRYAG 1 cut(s) 795
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 4 cut(s) 30, 124, 450, 743
SmoI CTYRAG 4 cut(s) 30, 124, 450, 743
SphI GCATGC 1 cut(s) 60
Sse9I AATT 6 cut(s) 161, 194, 202, 311, 399, 455
SseBI AGGCCT 1 cut(s) 635
SsiI CCGC 3 cut(s) 106, 516, 721
SspI AATATT 1 cut(s) 292
SspMI CTAG 4 cut(s) 98, 227, 533, 641
StuI AGGCCT 1 cut(s) 635
StyD4I CCNGG 2 cut(s) 40, 583
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 490
TasI AATT 6 cut(s) 161, 194, 202, 311, 399, 455
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 108
Tru1I TTAA 2 cut(s) 482, 844
Tru9I TTAA 2 cut(s) 482, 844
TscAI CASTG 2 cut(s) 469, 829
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 4 cut(s) 188, 305, 364, 569
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 6 cut(s) 15, 513, 521, 675, 697, 778
TspRI CASTG 2 cut(s) 469, 829
XapI RAATTY 1 cut(s) 161
XbaI TCTAGA 1 cut(s) 640
XceI RCATGY 1 cut(s) 60
XspI CTAG 4 cut(s) 98, 227, 533, 641
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.