protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 9 - 100 | 7.5e-22 | Rx N-terminal domain |
| NB-ARC | PF00931 | 193 - 346 | 1.2e-37 | NB-ARC domain |
| WHD_DRP | PF23559 | 431 - 499 | 1.2e-23 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 577 - 873 | 4.9e-22 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 693 - 817 | 5.5e-33 | R13L1/DRL21 LRRs |
| LRR_14 | PF23598 | 1086 - 1291 | 3.5e-08 | Leucine-rich repeat region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1881 |
| Acc36I | ACCTGC | 1 cut(s) | 1006 |
| Acc65I | GGTACC | 1 cut(s) | 1821 |
| AccB1I | GGYRCC | 2 cut(s) | 1821, 2644 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2408, 2701 |
| AccI | GTMKAC | 3 cut(s) | 493, 1378, 2766 |
| AccII | CGCG | 1 cut(s) | 937 |
| AccIII | TCCGGA | 2 cut(s) | 554, 3730 |
| AciI | CCGC | 4 cut(s) | 167, 2746, 3065, 3678 |
| AclI | AACGTT | 2 cut(s) | 1044, 1651 |
| AclWI | GGATC | 5 cut(s) | 1324, 3565, 3578, 3722, 3722 |
| AcoI | YGGCCR | 2 cut(s) | 591, 2960 |
| AcsI | RAATTY | 5 cut(s) | 347, 1310, 2319, 3103, 4041 |
| AcuI | CTGAAG | 4 cut(s) | 1829, 3257, 3392, 3611 |
| AfaI | GTAC | 5 cut(s) | 324, 1823, 1983, 2361, 3341 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 512, 2408, 2632, 2701, 3458, 3833, 3834, 3908, 3983 |
| AflII | CTTAAG | 1 cut(s) | 680 |
| AflIII | ACRYGT | 4 cut(s) | 637, 857, 2259, 2828 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 284 |
| AhlI | ACTAGT | 1 cut(s) | 925 |
| AjnI | CCWGG | 3 cut(s) | 789, 3254, 3976 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2956, 2988, 3460, 3492 |
| AleI | CACNNNNGTG | 1 cut(s) | 2774 |
| Alw21I | GWGCWC | 2 cut(s) | 762, 910 |
| Alw26I | GTCTC | 5 cut(s) | 393, 2510, 3194, 3636, 4026 |
| AlwI | GGATC | 5 cut(s) | 1324, 3565, 3578, 3722, 3722 |
| Ama87I | CYCGRG | 3 cut(s) | 23, 3191, 3335 |
| Aor13HI | TCCGGA | 2 cut(s) | 554, 3730 |
| AoxI | GGCC | 4 cut(s) | 591, 2166, 2960, 3522 |
| ApeKI | GCWGC | 4 cut(s) | 43, 305, 1121, 1505 |
| ApoI | RAATTY | 5 cut(s) | 347, 1310, 2319, 3103, 4041 |
| AseI | ATTAAT | 1 cut(s) | 1953 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 423, 776, 2341, 3475 |
| Asp718I | GGTACC | 1 cut(s) | 1821 |
| AspLEI | GCGC | 3 cut(s) | 939, 3262, 3999 |
| AspS9I | GGNCC | 5 cut(s) | 503, 876, 1753, 2090, 2166 |
| AsuC2I | CCSGG | 1 cut(s) | 2108 |
| AsuHPI | GGTGA | 8 cut(s) | 376, 1175, 1616, 2284, 2324, 2915, 3493, 3734 |
| AsuII | TTCGAA | 2 cut(s) | 1259, 3672 |
| AvaI | CYCGRG | 3 cut(s) | 23, 3191, 3335 |
| AvaII | GGWCC | 4 cut(s) | 503, 876, 1753, 2090 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1796, 1829, 2296, 2329 |
| BalI | TGGCCA | 2 cut(s) | 593, 2962 |
| BamHI | GGATCC | 1 cut(s) | 3570 |
| BanI | GGYRCC | 2 cut(s) | 1821, 2644 |
| BanII | GRGCYC | 2 cut(s) | 567, 3146 |
| BbsI | GAAGAC | 2 cut(s) | 249, 3807 |
| Bbv12I | GWGCWC | 2 cut(s) | 762, 910 |
| BbvI | GCAGC | 4 cut(s) | 30, 292, 1108, 1492 |
| BceAI | ACGGC | 3 cut(s) | 2242, 2315, 2485 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 551, 585, 641, 675, 1997, 2031 |
| BciT130I | CCWGG | 3 cut(s) | 791, 3256, 3978 |
| BciVI | GTATCC | 2 cut(s) | 847, 3950 |
| BcnI | CCSGG | 1 cut(s) | 2108 |
| BcoDI | GTCTC | 5 cut(s) | 393, 2510, 3194, 3636, 4026 |
| BcuI | ACTAGT | 1 cut(s) | 925 |
| BfmI | CTRYAG | 3 cut(s) | 1506, 2207, 2583 |
| BfoI | RGCGCY | 2 cut(s) | 3263, 4000 |
| BfrI | CTTAAG | 1 cut(s) | 680 |
| BfuAI | ACCTGC | 1 cut(s) | 1006 |
| BfuI | GTATCC | 2 cut(s) | 847, 3950 |
| BisI | GCNGC | 5 cut(s) | 44, 306, 1122, 1506, 3679 |
| BlsI | GCNGC | 5 cut(s) | 45, 307, 1123, 1507, 3680 |
| Bme1390I | CCNGG | 4 cut(s) | 791, 2108, 3256, 3978 |
| Bme18I | GGWCC | 4 cut(s) | 503, 876, 1753, 2090 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 284 |
| BmeT110I | CYCGRG | 3 cut(s) | 23, 3191, 3335 |
| BmgT120I | GGNCC | 5 cut(s) | 503, 876, 1753, 2090, 2166 |
| BmiI | GGNNCC | 8 cut(s) | 329, 559, 967, 1754, 1823, 2646, 3464, 3572 |
| BmrFI | CCNGG | 4 cut(s) | 791, 2108, 3256, 3978 |
| BmrI | ACTGGG | 3 cut(s) | 532, 561, 1220 |
| BmuI | ACTGGG | 3 cut(s) | 532, 561, 1220 |
| BpiI | GAAGAC | 2 cut(s) | 249, 3807 |
| BpmI | CTGGAG | 6 cut(s) | 1550, 2153, 2475, 2654, 3317, 3895 |
| Bpu14I | TTCGAA | 2 cut(s) | 1259, 3672 |
| BpuEI | CTTGAG | 8 cut(s) | 101, 1768, 2110, 2411, 3505, 3578, 3635, 3800 |
| BpuMI | CCSGG | 1 cut(s) | 2108 |
| BsaAI | YACGTR | 1 cut(s) | 92 |
| BsaI | GGTCTC | 1 cut(s) | 2510 |
| BsaJI | CCNNGG | 3 cut(s) | 2107, 3254, 3255 |
| BsaWI | WCCGGW | 2 cut(s) | 554, 3730 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2088, 2118, 3383, 3413 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 512, 2408, 2632, 2701, 3458, 3833, 3834, 3908, 3983 |
| Bse3DI | GCAATG | 2 cut(s) | 1111, 2834 |
| BseAI | TCCGGA | 2 cut(s) | 554, 3730 |
| BseBI | CCWGG | 3 cut(s) | 791, 3256, 3978 |
| BseDI | CCNNGG | 3 cut(s) | 2107, 3254, 3255 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 512, 2408, 2632, 2701, 3458, 3833, 3834, 3908, 3983 |
| BseMI | GCAATG | 2 cut(s) | 1111, 2834 |
| BseMII | CTCAG | 4 cut(s) | 814, 1229, 2466, 2941 |
| BseRI | GAGGAG | 4 cut(s) | 185, 2834, 3143, 3194 |
| BseXI | GCAGC | 4 cut(s) | 30, 292, 1108, 1492 |
| BseYI | CCCAGC | 1 cut(s) | 3827 |
| Bsh1236I | CGCG | 1 cut(s) | 937 |
| BshFI | GGCC | 4 cut(s) | 593, 2168, 2962, 3524 |
| BshNI | GGYRCC | 2 cut(s) | 1821, 2644 |
| BsiHKAI | GWGCWC | 2 cut(s) | 762, 910 |
| BsiHKCI | CYCGRG | 3 cut(s) | 23, 3191, 3335 |
| BsiSI | CCGG | 3 cut(s) | 555, 2107, 3731 |
| BslFI | GGGAC | 4 cut(s) | 533, 1097, 2125, 3829 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 512, 2408, 2632, 2701, 3458, 3833, 3834, 3908, 3983 |
| BsmAI | GTCTC | 5 cut(s) | 393, 2510, 3194, 3636, 4026 |
| BsmFI | GGGAC | 4 cut(s) | 533, 1097, 2125, 3829 |
| BsmI | GAATGC | 3 cut(s) | 29, 2004, 3680 |
| BsnI | GGCC | 4 cut(s) | 593, 2168, 2962, 3524 |
| Bso31I | GGTCTC | 1 cut(s) | 2510 |
| BsoBI | CYCGRG | 3 cut(s) | 23, 3191, 3335 |
| Bsp119I | TTCGAA | 2 cut(s) | 1259, 3672 |
| Bsp1286I | GDGCHC | 4 cut(s) | 567, 762, 910, 3146 |
| Bsp13I | TCCGGA | 2 cut(s) | 554, 3730 |
| Bsp1407I | TGTACA | 1 cut(s) | 1981 |
| Bsp143I | GATC | 9 cut(s) | 69, 214, 381, 510, 1329, 3498, 3570, 3714, 3727 |
| BspACI | CCGC | 4 cut(s) | 167, 2746, 3065, 3678 |
| BspANI | GGCC | 4 cut(s) | 593, 2168, 2962, 3524 |
| BspCNI | CTCAG | 4 cut(s) | 813, 1230, 2467, 2940 |
| BspEI | TCCGGA | 2 cut(s) | 554, 3730 |
| BspFNI | CGCG | 1 cut(s) | 937 |
| BspLI | GGNNCC | 8 cut(s) | 329, 559, 967, 1754, 1823, 2646, 3464, 3572 |
| BspMAI | CTGCAG | 1 cut(s) | 1510 |
| BspMI | ACCTGC | 1 cut(s) | 1006 |
| BspPI | GGATC | 5 cut(s) | 1324, 3565, 3578, 3722, 3722 |
| BspQI | GCTCTTC | 1 cut(s) | 3151 |
| BspT104I | TTCGAA | 2 cut(s) | 1259, 3672 |
| BspT107I | GGYRCC | 2 cut(s) | 1821, 2644 |
| BspTI | CTTAAG | 1 cut(s) | 680 |
| BspTNI | GGTCTC | 1 cut(s) | 2510 |
| BsrDI | GCAATG | 2 cut(s) | 1111, 2834 |
| BsrGI | TGTACA | 1 cut(s) | 1981 |
| BssECI | CCNNGG | 3 cut(s) | 2107, 3254, 3255 |
| BssMI | GATC | 9 cut(s) | 69, 214, 381, 510, 1329, 3498, 3570, 3714, 3727 |
| BssNAI | GTATAC | 1 cut(s) | 2767 |
| Bst1107I | GTATAC | 1 cut(s) | 2767 |
| Bst2UI | CCWGG | 3 cut(s) | 791, 3256, 3978 |
| Bst6I | CTCTTC | 2 cut(s) | 1261, 3151 |
| BstAFI | CTTAAG | 1 cut(s) | 680 |
| BstAUI | TGTACA | 1 cut(s) | 1981 |
| BstBAI | YACGTR | 1 cut(s) | 92 |
| BstBI | TTCGAA | 2 cut(s) | 1259, 3672 |
| BstC8I | GCNNGC | 6 cut(s) | 85, 2498, 2623, 3539, 3683, 3914 |
| BstDEI | CTNAG | 9 cut(s) | 250, 800, 1238, 1562, 2475, 2927, 3074, 3701, 3935 |
| BstFNI | CGCG | 1 cut(s) | 937 |
| BstH2I | RGCGCY | 2 cut(s) | 3263, 4000 |
| BstHHI | GCGC | 3 cut(s) | 939, 3262, 3999 |
| BstKTI | GATC | 9 cut(s) | 72, 217, 384, 513, 1332, 3501, 3573, 3717, 3730 |
| BstMAI | GTCTC | 5 cut(s) | 393, 2510, 3194, 3636, 4026 |
| BstMBI | GATC | 9 cut(s) | 69, 214, 381, 510, 1329, 3498, 3570, 3714, 3727 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 149, 1502, 1738, 2165 |
| BstNI | CCWGG | 3 cut(s) | 791, 3256, 3978 |
| BstNSI | RCATGY | 7 cut(s) | 641, 861, 1555, 2263, 2625, 2832, 3541 |
| BstSCI | CCNGG | 4 cut(s) | 789, 2106, 3254, 3976 |
| BstSFI | CTRYAG | 3 cut(s) | 1506, 2207, 2583 |
| BstUI | CGCG | 1 cut(s) | 937 |
| BstV1I | GCAGC | 4 cut(s) | 30, 292, 1108, 1492 |
| BstV2I | GAAGAC | 2 cut(s) | 249, 3807 |
| BstX2I | RGATCY | 2 cut(s) | 3570, 3727 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 542 |
| BstYI | RGATCY | 2 cut(s) | 3570, 3727 |
| BstZ17I | GTATAC | 1 cut(s) | 2767 |
| BsuI | GTATCC | 2 cut(s) | 847, 3950 |
| BsuRI | GGCC | 4 cut(s) | 593, 2168, 2962, 3524 |
| BtsI | GCAGTG | 1 cut(s) | 3953 |
| BtsIMutI | CAGTG | 9 cut(s) | 574, 760, 1321, 2216, 2307, 3724, 3923, 3946, 3953 |
| BveI | ACCTGC | 1 cut(s) | 1006 |
| Cac8I | GCNNGC | 6 cut(s) | 85, 2498, 2623, 3539, 3683, 3914 |
| CfoI | GCGC | 3 cut(s) | 939, 3262, 3999 |
| Cfr13I | GGNCC | 5 cut(s) | 503, 876, 1753, 2090, 2166 |
| CseI | GACGC | 3 cut(s) | 288, 1138, 1949 |
| CsiI | ACCWGGT | 1 cut(s) | 3976 |
| Csp6I | GTAC | 5 cut(s) | 323, 1822, 1982, 2360, 3340 |
| CviQI | GTAC | 5 cut(s) | 323, 1822, 1982, 2360, 3340 |
| DdeI | CTNAG | 9 cut(s) | 250, 800, 1238, 1562, 2475, 2927, 3074, 3701, 3935 |
| DpnI | GATC | 9 cut(s) | 71, 216, 383, 512, 1331, 3500, 3572, 3716, 3729 |
| DpnII | GATC | 9 cut(s) | 69, 214, 381, 510, 1329, 3498, 3570, 3714, 3727 |
| DriI | GACNNNNNGTC | 1 cut(s) | 284 |
| EaeI | YGGCCR | 2 cut(s) | 591, 2960 |
| Eam1104I | CTCTTC | 2 cut(s) | 1261, 3151 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 284 |
| EarI | CTCTTC | 2 cut(s) | 1261, 3151 |
| Eco147I | AGGCCT | 1 cut(s) | 3524 |
| Eco24I | GRGCYC | 2 cut(s) | 567, 3146 |
| Eco31I | GGTCTC | 1 cut(s) | 2510 |
| Eco32I | GATATC | 1 cut(s) | 3056 |
| Eco47I | GGWCC | 4 cut(s) | 503, 876, 1753, 2090 |
| Eco57I | CTGAAG | 4 cut(s) | 1829, 3257, 3392, 3611 |
| Eco88I | CYCGRG | 3 cut(s) | 23, 3191, 3335 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1753, 2090 |
| EcoRI | GAATTC | 2 cut(s) | 1310, 4041 |
| EcoRII | CCWGG | 3 cut(s) | 789, 3254, 3976 |
| EcoRV | GATATC | 1 cut(s) | 3056 |
| EcoT22I | ATGCAT | 4 cut(s) | 1476, 2623, 2744, 3316 |
| EcoT38I | GRGCYC | 2 cut(s) | 567, 3146 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 30, 62, 408, 440, 3460, 3492 |
| FaqI | GGGAC | 4 cut(s) | 533, 1097, 2125, 3829 |
| FauNDI | CATATG | 3 cut(s) | 1938, 3206, 4022 |
| FblI | GTMKAC | 3 cut(s) | 493, 1378, 2766 |
| Fnu4HI | GCNGC | 5 cut(s) | 44, 306, 1122, 1506, 3679 |
| FriOI | GRGCYC | 2 cut(s) | 567, 3146 |
| Fsp4HI | GCNGC | 5 cut(s) | 44, 306, 1122, 1506, 3679 |
| GlaI | GCGC | 3 cut(s) | 938, 3261, 3998 |
| GluI | GCNGC | 5 cut(s) | 44, 306, 1122, 1506, 3679 |
| GsaI | CCCAGC | 1 cut(s) | 3831 |
| GsuI | CTGGAG | 6 cut(s) | 1550, 2153, 2475, 2654, 3317, 3895 |
| HaeII | RGCGCY | 2 cut(s) | 3263, 4000 |
| HaeIII | GGCC | 4 cut(s) | 593, 2168, 2962, 3524 |
| HapII | CCGG | 3 cut(s) | 555, 2107, 3731 |
| HgaI | GACGC | 3 cut(s) | 288, 1138, 1949 |
| HhaI | GCGC | 3 cut(s) | 939, 3262, 3999 |
| Hin6I | GCGC | 3 cut(s) | 937, 3260, 3997 |
| HinP1I | GCGC | 3 cut(s) | 937, 3260, 3997 |
| HincII | GTYRAC | 5 cut(s) | 494, 813, 1048, 2022, 2782 |
| HindII | GTYRAC | 5 cut(s) | 494, 813, 1048, 2022, 2782 |
| HindIII | AAGCTT | 1 cut(s) | 2606 |
| HpaI | GTTAAC | 2 cut(s) | 1048, 2022 |
| HpaII | CCGG | 3 cut(s) | 555, 2107, 3731 |
| HphI | GGTGA | 8 cut(s) | 376, 1175, 1616, 2284, 2324, 2915, 3493, 3734 |
| Hpy99I | CGWCG | 3 cut(s) | 282, 653, 656 |
| HpyCH4IV | ACGT | 4 cut(s) | 91, 1044, 1651, 1661 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 149, 1502, 1738, 2165 |
| HpyF3I | CTNAG | 9 cut(s) | 250, 800, 1238, 1562, 2475, 2927, 3074, 3701, 3935 |
| HpySE526I | ACGT | 4 cut(s) | 91, 1044, 1651, 1661 |
| HspAI | GCGC | 3 cut(s) | 937, 3260, 3997 |
| Kpn2I | TCCGGA | 2 cut(s) | 554, 3730 |
| KpnI | GGTACC | 1 cut(s) | 1825 |
| KspAI | GTTAAC | 2 cut(s) | 1048, 2022 |
| Kzo9I | GATC | 9 cut(s) | 69, 214, 381, 510, 1329, 3498, 3570, 3714, 3727 |
| LguI | GCTCTTC | 1 cut(s) | 3151 |
| Lsp1109I | GCAGC | 4 cut(s) | 30, 292, 1108, 1492 |
| MabI | ACCWGGT | 1 cut(s) | 3976 |
| MaeII | ACGT | 4 cut(s) | 91, 1044, 1651, 1661 |
| MalI | GATC | 9 cut(s) | 71, 216, 383, 512, 1331, 3500, 3572, 3716, 3729 |
| MboI | GATC | 9 cut(s) | 69, 214, 381, 510, 1329, 3498, 3570, 3714, 3727 |
| MfeI | CAATTG | 2 cut(s) | 2709, 2915 |
| MflI | RGATCY | 2 cut(s) | 3570, 3727 |
| MhlI | GDGCHC | 4 cut(s) | 567, 762, 910, 3146 |
| MlsI | TGGCCA | 2 cut(s) | 593, 2962 |
| MluNI | TGGCCA | 2 cut(s) | 593, 2962 |
| MlyI | GAGTC | 9 cut(s) | 294, 387, 1082, 1207, 2078, 3191, 3252, 3308, 3684 |
| MmeI | TCCRAC | 4 cut(s) | 523, 595, 883, 3504 |
| Mox20I | TGGCCA | 2 cut(s) | 593, 2962 |
| Mph1103I | ATGCAT | 4 cut(s) | 1476, 2623, 2744, 3316 |
| MroI | TCCGGA | 2 cut(s) | 554, 3730 |
| MroXI | GAANNNNTTC | 4 cut(s) | 423, 776, 2341, 3475 |
| MscI | TGGCCA | 2 cut(s) | 593, 2962 |
| MslI | CAYNNNNRTG | 3 cut(s) | 269, 2354, 2774 |
| Msp20I | TGGCCA | 2 cut(s) | 593, 2962 |
| MspCI | CTTAAG | 1 cut(s) | 680 |
| MspI | CCGG | 3 cut(s) | 555, 2107, 3731 |
| MspR9I | CCNGG | 4 cut(s) | 791, 2108, 3256, 3978 |
| MunI | CAATTG | 2 cut(s) | 2709, 2915 |
| Mva1269I | GAATGC | 3 cut(s) | 29, 2004, 3680 |
| MvaI | CCWGG | 3 cut(s) | 791, 3256, 3978 |
| MvnI | CGCG | 1 cut(s) | 937 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 149, 1502, 1738, 2165 |
| NciI | CCSGG | 1 cut(s) | 2108 |
| NdeI | CATATG | 3 cut(s) | 1938, 3206, 4022 |
| NdeII | GATC | 9 cut(s) | 69, 214, 381, 510, 1329, 3498, 3570, 3714, 3727 |
| NlaIV | GGNNCC | 8 cut(s) | 329, 559, 967, 1754, 1823, 2646, 3464, 3572 |
| NmeAIII | GCCGAG | 1 cut(s) | 586 |
| NmuCI | GTSAC | 7 cut(s) | 724, 860, 928, 2140, 2690, 2871, 3944 |
| NsiI | ATGCAT | 4 cut(s) | 1476, 2623, 2744, 3316 |
| NspI | RCATGY | 7 cut(s) | 641, 861, 1555, 2263, 2625, 2832, 3541 |
| NspV | TTCGAA | 2 cut(s) | 1259, 3672 |
| OliI | CACNNNNGTG | 1 cut(s) | 2774 |
| PaeI | GCATGC | 2 cut(s) | 2625, 3541 |
| PaeR7I | CTCGAG | 2 cut(s) | 3191, 3335 |
| PasI | CCCWGGG | 1 cut(s) | 3255 |
| PceI | AGGCCT | 1 cut(s) | 3524 |
| PciI | ACATGT | 4 cut(s) | 637, 857, 2259, 2828 |
| PciSI | GCTCTTC | 1 cut(s) | 3151 |
| PctI | GAATGC | 3 cut(s) | 29, 2004, 3680 |
| PdmI | GAANNNNTTC | 4 cut(s) | 423, 776, 2341, 3475 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2408, 2701 |
| PfoI | TCCNGGA | 1 cut(s) | 789 |
| PkrI | GCNGC | 5 cut(s) | 45, 307, 1123, 1507, 3680 |
| PleI | GAGTC | 9 cut(s) | 293, 387, 1081, 1206, 2077, 3190, 3251, 3307, 3684 |
| PpsI | GAGTC | 9 cut(s) | 293, 387, 1081, 1206, 2077, 3190, 3251, 3307, 3684 |
| Ppu21I | YACGTR | 1 cut(s) | 92 |
| PpuMI | RGGWCCY | 2 cut(s) | 1753, 2090 |
| PscI | ACATGT | 4 cut(s) | 637, 857, 2259, 2828 |
| PshBI | ATTAAT | 1 cut(s) | 1953 |
| PsiI | TTATAA | 1 cut(s) | 1881 |
| Psp1406I | AACGTT | 2 cut(s) | 1044, 1651 |
| Psp5II | RGGWCCY | 2 cut(s) | 1753, 2090 |
| Psp6I | CCWGG | 3 cut(s) | 789, 3254, 3976 |
| PspFI | CCCAGC | 1 cut(s) | 3827 |
| PspGI | CCWGG | 3 cut(s) | 789, 3254, 3976 |
| PspN4I | GGNNCC | 8 cut(s) | 329, 559, 967, 1754, 1823, 2646, 3464, 3572 |
| PspPI | GGNCC | 5 cut(s) | 503, 876, 1753, 2090, 2166 |
| PspPPI | RGGWCCY | 2 cut(s) | 1753, 2090 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2280, 2312 |
| PstI | CTGCAG | 1 cut(s) | 1510 |
| PsuI | RGATCY | 2 cut(s) | 3570, 3727 |
| RsaI | GTAC | 5 cut(s) | 324, 1823, 1983, 2361, 3341 |
| RsaNI | GTAC | 5 cut(s) | 323, 1822, 1982, 2360, 3340 |
| RseI | CAYNNNNRTG | 3 cut(s) | 269, 2354, 2774 |
| SalI | GTCGAC | 1 cut(s) | 492 |
| SapI | GCTCTTC | 1 cut(s) | 3151 |
| SatI | GCNGC | 5 cut(s) | 44, 306, 1122, 1506, 3679 |
| Sau3AI | GATC | 9 cut(s) | 69, 214, 381, 510, 1329, 3498, 3570, 3714, 3727 |
| Sau96I | GGNCC | 5 cut(s) | 503, 876, 1753, 2090, 2166 |
| SchI | GAGTC | 9 cut(s) | 294, 387, 1082, 1207, 2078, 3191, 3252, 3308, 3684 |
| ScrFI | CCNGG | 4 cut(s) | 791, 2108, 3256, 3978 |
| SduI | GDGCHC | 4 cut(s) | 567, 762, 910, 3146 |
| SexAI | ACCWGGT | 1 cut(s) | 3976 |
| SfcI | CTRYAG | 3 cut(s) | 1506, 2207, 2583 |
| Sfr274I | CTCGAG | 2 cut(s) | 3191, 3335 |
| SfuI | TTCGAA | 2 cut(s) | 1259, 3672 |
| SinI | GGWCC | 4 cut(s) | 503, 876, 1753, 2090 |
| SlaI | CTCGAG | 2 cut(s) | 3191, 3335 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 269, 2354, 2774 |
| SpeI | ACTAGT | 1 cut(s) | 925 |
| SphI | GCATGC | 2 cut(s) | 2625, 3541 |
| SseBI | AGGCCT | 1 cut(s) | 3524 |
| SsiI | CCGC | 4 cut(s) | 167, 2746, 3065, 3678 |
| SspI | AATATT | 1 cut(s) | 3374 |
| StuI | AGGCCT | 1 cut(s) | 3524 |
| StyD4I | CCNGG | 4 cut(s) | 789, 2106, 3254, 3976 |
| TaiI | ACGT | 4 cut(s) | 94, 1047, 1654, 1664 |
| TatI | WGTACW | 2 cut(s) | 1981, 3339 |
| TauI | GCSGC | 1 cut(s) | 3681 |
| TscAI | CASTG | 9 cut(s) | 574, 767, 1321, 2216, 2314, 3724, 3930, 3953, 3960 |
| TseFI | GTSAC | 7 cut(s) | 724, 860, 928, 2140, 2690, 2871, 3944 |
| TseI | GCWGC | 4 cut(s) | 43, 305, 1121, 1505 |
| Tsp45I | GTSAC | 7 cut(s) | 724, 860, 928, 2140, 2690, 2871, 3944 |
| TspGWI | ACGGA | 3 cut(s) | 340, 2722, 3932 |
| TspRI | CASTG | 9 cut(s) | 574, 767, 1321, 2216, 2314, 3724, 3930, 3953, 3960 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2408, 2701 |
| Vha464I | CTTAAG | 1 cut(s) | 680 |
| VpaK11BI | GGWCC | 4 cut(s) | 503, 876, 1753, 2090 |
| VspI | ATTAAT | 1 cut(s) | 1953 |
| XapI | RAATTY | 5 cut(s) | 347, 1310, 2319, 3103, 4041 |
| XceI | RCATGY | 7 cut(s) | 641, 861, 1555, 2263, 2625, 2832, 3541 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 601, 3760 |
| XhoI | CTCGAG | 2 cut(s) | 3191, 3335 |
| XmiI | GTMKAC | 3 cut(s) | 493, 1378, 2766 |
| XmnI | GAANNNNTTC | 4 cut(s) | 423, 776, 2341, 3475 |
| Zsp2I | ATGCAT | 4 cut(s) | 1476, 2623, 2744, 3316 |