Rroxscaffold_1G00035660

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000157
Physical Location & Seq
Forward (+)
51819220 .. 51823669
4450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00035660.1

Sequence Viewer

Length: 810 bp
ATGGCGGAAACCTCTCATTCAATGGCTGAGGCATTTCTTCATAGTTATAGGCTTGCTTTCATTGGTGGAGCCGTGGAATATTTGGAACCAGTGTCTAGGCCACAGCCTGGAATTCAATTGATGGCTACTGGTAATGGAGGTCGAACAGCAACTGCACATTACGTCATCAACATTCCCCCAATACCTTCACCTTCGCATCATTTTCTAGAAAACGACAACAGAGAGCTATACCTTAGTACATGTGTGCCGCTTAATAAGTATGCACTAAAAGGCAATTGGGAAGCTGCTAAACTAATCTTGGAGACAAAACCGAGTCTTTTGACTTCTAGCATAACAAGAGGAGGGGACACTCTCCTTCATGTTGCAGCAGGAGCAAGACAAGTTCACTTTGCGGAGAAGCTGGTCGAAATGATGGAAGTATTGAATGGAATGGAGAAATGTTCACAAGACTTGGCACTAAGAGACATGAATGGAAACACCGCCTTCGCCTTTCGCCGCTGCAGTGGAAGTATTGAAATTGCAGATATTATGATCAAGAAGAATAAGTATTTGCCAATAATTCTAGGCGGTGAAGGAATGACACCACTCTATATGGCTGCCTTGTTGGGACAATCTGTAATGGCAGATTACTTGTACTCTCGAACCAAGGAAATGTTAGGGGAAGACGACCGGAAATCGTTGTTTTTAACTTGTATCGATAATGGATTGTATGATCTAGCTAGGACGATGCTAGAAAATGACAGAACATTAGCTAAGGTTCGTAATACAAATGAGGAAACAGCTTTGCATATCTTGGCTAGAATGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

269

Amino Acids

29.8

Weight (kDa)

6.25

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 107
AciI CCGC 6 cut(s) 5, 248, 392, 480, 496, 567
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 2 cut(s) 238, 635
AfiI CCNNNNNNNGG 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 4 cut(s) 21, 116, 424, 515
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 6 cut(s) 226, 284, 400, 719, 752, 782
AluI AGCT 6 cut(s) 226, 284, 400, 719, 752, 782
Alw26I GTCTC 2 cut(s) 296, 456
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 4 cut(s) 284, 365, 498, 596
ApoI RAATTY 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 180, 581
BbsI GAAGAC 1 cut(s) 669
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 4 cut(s) 271, 377, 485, 583
BccI CCATC 2 cut(s) 115, 406
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 108
BclI TGATCA 1 cut(s) 531
BcoDI GTCTC 2 cut(s) 296, 456
BfaI CTAG 8 cut(s) 96, 206, 327, 563, 716, 720, 731, 798
BfmI CTRYAG 1 cut(s) 499
BisI GCNGC 6 cut(s) 248, 285, 366, 496, 499, 597
BlsI GCNGC 6 cut(s) 249, 286, 367, 497, 500, 598
Bme1390I CCNGG 1 cut(s) 108
BmiI GGNNCC 2 cut(s) 70, 87
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 205, 717
BpiI GAAGAC 1 cut(s) 669
Bpu10I CCTNAGC 2 cut(s) 27, 753
Bsa29I ATCGAT 1 cut(s) 696
BsaJI CCNNGG 2 cut(s) 72, 645
BsaWI WCCGGW 1 cut(s) 669
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 89, 133
BseBI CCWGG 1 cut(s) 108
BseCI ATCGAT 1 cut(s) 696
BseDI CCNNGG 2 cut(s) 72, 645
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 89, 133
BseRI GAGGAG 1 cut(s) 354
BseXI GCAGC 4 cut(s) 271, 377, 485, 583
BsgI GTGCAG 1 cut(s) 138
Bsh1285I CGRYCG 1 cut(s) 670
BshFI GGCC 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 696
BsiEI CGRYCG 1 cut(s) 670
BsiSI CCGG 1 cut(s) 670
BslFI GGGAC 2 cut(s) 359, 621
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 296, 456
BsmFI GGGAC 2 cut(s) 359, 621
BsmI GAATGC 1 cut(s) 807
BsnI GGCC 1 cut(s) 100
Bsp143I GATC 2 cut(s) 531, 712
BspACI CCGC 6 cut(s) 5, 248, 392, 480, 496, 567
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 19
BspDI ATCGAT 1 cut(s) 696
BspLI GGNNCC 2 cut(s) 70, 87
BspMAI CTGCAG 1 cut(s) 503
BsrI ACTGG 2 cut(s) 89, 133
BssECI CCNNGG 2 cut(s) 72, 645
BssMI GATC 2 cut(s) 531, 712
BssT1I CCWWGG 1 cut(s) 645
Bst2UI CCWGG 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 4 cut(s) 27, 233, 458, 753
BstDSI CCRYGG 1 cut(s) 72
BstKTI GATC 2 cut(s) 534, 715
BstMAI GTCTC 2 cut(s) 296, 456
BstMBI GATC 2 cut(s) 531, 712
BstMCI CGRYCG 1 cut(s) 670
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 499
BstV1I GCAGC 4 cut(s) 271, 377, 485, 583
BstV2I GAAGAC 1 cut(s) 669
Bsu15I ATCGAT 1 cut(s) 696
BsuRI GGCC 1 cut(s) 100
BsuTUI ATCGAT 1 cut(s) 696
BtgI CCRYGG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 2 cut(s) 96, 508
Cac8I GCNNGC 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 152
ClaI ATCGAT 1 cut(s) 696
Csp6I GTAC 2 cut(s) 237, 634
CviAII CATG 3 cut(s) 240, 359, 466
CviQI GTAC 2 cut(s) 237, 634
DdeI CTNAG 4 cut(s) 27, 233, 458, 753
DpnI GATC 2 cut(s) 533, 714
DpnII GATC 2 cut(s) 531, 712
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 645
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 3 cut(s) 243, 362, 469
FaqI GGGAC 2 cut(s) 359, 621
FatI CATG 3 cut(s) 239, 358, 465
FbaI TGATCA 1 cut(s) 531
Fnu4HI GCNGC 6 cut(s) 248, 285, 366, 496, 499, 597
Fsp4HI GCNGC 6 cut(s) 248, 285, 366, 496, 499, 597
FspBI CTAG 8 cut(s) 96, 206, 327, 563, 716, 720, 731, 798
GluI GCNGC 6 cut(s) 248, 285, 366, 496, 499, 597
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 670
Hin1II CATG 3 cut(s) 243, 362, 469
HinfI GANTC 1 cut(s) 313
HpaII CCGG 1 cut(s) 670
HphI GGTGA 2 cut(s) 180, 581
Hpy166II GTNNAC 2 cut(s) 385, 443
Hpy188III TCNNGA 3 cut(s) 206, 535, 639
Hpy8I GTNNAC 2 cut(s) 385, 443
HpyAV CCTTC 5 cut(s) 195, 201, 365, 493, 566
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 6 cut(s) 155, 263, 365, 501, 521, 787
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 4 cut(s) 27, 233, 458, 753
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 3 cut(s) 243, 362, 469
Ksp22I TGATCA 1 cut(s) 531
Kzo9I GATC 2 cut(s) 531, 712
LmnI GCTCC 2 cut(s) 68, 371
LpnPI CCDG 7 cut(s) 93, 102, 114, 120, 354, 386, 683
Lsp1109I GCAGC 4 cut(s) 271, 377, 485, 583
LweI GCATC 2 cut(s) 205, 717
MaeI CTAG 8 cut(s) 96, 206, 327, 563, 716, 720, 731, 798
MaeII ACGT 1 cut(s) 162
MalI GATC 2 cut(s) 533, 714
MboI GATC 2 cut(s) 531, 712
MboII GAAGA 3 cut(s) 29, 550, 674
MfeI CAATTG 2 cut(s) 116, 274
MluCI AATT 5 cut(s) 111, 116, 274, 516, 558
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 6 cut(s) 22, 22, 131, 332, 335, 766
MseI TTAA 2 cut(s) 252, 686
MspA1I CMGCKG 1 cut(s) 498
MspI CCGG 1 cut(s) 670
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 2 cut(s) 116, 274
Mva1269I GAATGC 1 cut(s) 807
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 2 cut(s) 531, 712
NlaIII CATG 3 cut(s) 243, 362, 469
NlaIV GGNNCC 2 cut(s) 70, 87
NspI RCATGY 1 cut(s) 243
PciI ACATGT 1 cut(s) 239
PctI GAATGC 1 cut(s) 807
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 6 cut(s) 249, 286, 367, 497, 500, 598
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
PscI ACATGT 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 70, 87
PstI CTGCAG 1 cut(s) 503
PstNI CAGNNNCTG 1 cut(s) 152
RsaI GTAC 2 cut(s) 238, 635
RsaNI GTAC 2 cut(s) 237, 634
SaqAI TTAA 2 cut(s) 252, 686
SatI GCNGC 6 cut(s) 248, 285, 366, 496, 499, 597
Sau3AI GATC 2 cut(s) 531, 712
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 1 cut(s) 108
SfaNI GCATC 2 cut(s) 205, 717
SfcI CTRYAG 1 cut(s) 499
Sse9I AATT 5 cut(s) 111, 116, 274, 516, 558
SsiI CCGC 6 cut(s) 5, 248, 392, 480, 496, 567
SspI AATATT 1 cut(s) 80
SspMI CTAG 8 cut(s) 96, 206, 327, 563, 716, 720, 731, 798
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 645
TaiI ACGT 1 cut(s) 165
TaqI TCGA 4 cut(s) 142, 405, 640, 696
TasI AATT 5 cut(s) 111, 116, 274, 516, 558
TatI WGTACW 2 cut(s) 236, 633
TauI GCSGC 2 cut(s) 250, 498
Tru1I TTAA 2 cut(s) 252, 686
Tru9I TTAA 2 cut(s) 252, 686
TscAI CASTG 2 cut(s) 96, 508
TseI GCWGC 4 cut(s) 284, 365, 498, 596
TspDTI ATGAA 4 cut(s) 29, 49, 347, 482
TspRI CASTG 2 cut(s) 96, 508
Van91I CCANNNNNTGG 1 cut(s) 107
XapI RAATTY 1 cut(s) 111
XbaI TCTAGA 1 cut(s) 205
XceI RCATGY 1 cut(s) 243
XspI CTAG 8 cut(s) 96, 206, 327, 563, 716, 720, 731, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.