Rorug05G0222500

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000157
Physical Location & Seq
Reverse (-)
23051212 .. 23052026
815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0222500.1

Sequence Viewer

Length: 711 bp
ATGGAGTTTGAAAAGATGCTTACTGTTGTCAGCATTCTGTGTTGGAACATTTGGAAGGCAAGATGTGCCTTCTTGTACCAGCAGAGACCTGTCTCCCCAAGCCACACTATTACCACTTCTCTCAATCTGGTTTTGGAATTTCTTGAGGCATCGAAGTGGCCTCTGTCATCTCCGATACAAGACTCCAGCAGAGTGGTTGATCACTGTAATTGGACTGCTCCTCCTCCAGGTTTTACAAAGGTTAACTGTGATGCAGCTTGGGTAGCCCCGAATTCGGCTAGACTAGGAGTCATTATTAGAGACCATTTGGGATCCTCCCTGGGTGGCTCTGCTATACCAGCTACTTGCTCGTCGGCGACAATAGCAGAATCCAAGGCTTTGCTCTCTGGTGTTGATCTCGCAATTTCATTGAATCTGAAAATGGTAAGATTTGAATCTGATGCAAAAGAGGTTATTGAGAATCTGAAGCTTCCAATCTGTCGAAATTGGAAAACTTACCCGATCATTGAGAAGATAAGGAGGCGCTGCACCTTCTTTGATTGTTCCTCTTGGGACTGGGTTCCCCGTGAAGCGAATAGAGCTTCTCACCTTGCAGCTTCGCTTACCATTCGGACGGTGGGTCCTCTGCGATGGGCTAACCAGCCACCACTATCTTTGACTCGTGTGTTGAGGAATGATGGATTACCTTGCCCTCCTCCATTGGAGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

236

Amino Acids

26.34

Weight (kDa)

9.05

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 82 - 200 1.1e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54070 AT5G35830
fragaria_vesca FvH4_3g25070 FvH4_3g25080 FvH4_3g25081 FvH4_3g25081
malus_domestica MD03G1027500.v1.1 MD03G1146300.v1.1 MD03G1146800.v1.1 MD03G1146900.v1.1 MD03G1147100.v1.1 MD11G1165600.v1.1
prunus_persica Prupe.2G015800_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G015900_v2.0.a1 Prupe.2G016300_v2.0.a1 Prupe.2G016500_v2.0.a1 Prupe.6G131100_v2.0.a1 Prupe.6G131400_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131500_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131600_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1 Prupe.6G131800_v2.0.a1
pyrus_communis pycom03g10090 pycom03g10110 pycom11g13740 pycom11g13770
rosa_chinensis RchiOBHm_Chr1g0316371 RchiOBHm_Chr1g0316381 RchiOBHm_Chr1g0316401 RchiOBHm_Chr1g0316411 RchiOBHm_Chr1g0316571 RchiOBHm_Chr1g0316601 RchiOBHm_Chr5g0039341 RchiOBHm_Chr5g0041371 RchiOBHm_Chr5g0041401 RchiOBHm_Chr5g0041431 RchiOBHm_Chr5g0041471 RchiOBHm_Chr5g0045281 RchiOBHm_Chr5g0045291 RchiOBHm_Chr5g0045311 RchiOBHm_Chr5g0045371 RchiOBHm_Chr5g0045421 RchiOBHm_Chr5g0045431 RchiOBHm_Chr5g0045501 RchiOBHm_Chr5g0045551 RchiOBHm_Chr5g0045771 RchiOBHm_Chr5g0045811
rosa_laevigata RLG00000034057 RLG00000034058
rosa_multiflora Rmu_co8352751.1_g000001 Rmu_co8397575.1_g000001 Rmu_sc0000415.1_g000006 Rmu_sc0000493.1_g000057 Rmu_sc0000504.1_g000003 Rmu_sc0000594.1_g000019 Rmu_sc0000594.1_g000032 Rmu_sc0000594.1_g000066 Rmu_sc0001047.1_g000003 Rmu_sc0001047.1_g000011 Rmu_sc0001556.1_g000023 Rmu_sc0002584.1_g000003 Rmu_sc0002584.1_g000039 Rmu_sc0002584.1_g000070 Rmu_sc0002667.1_g000015 Rmu_sc0003677.1_g000003 Rmu_sc0003743.1_g000017 Rmu_sc0004520.1_g000004 Rmu_sc0004520.1_g000013 Rmu_sc0004520.1_g000027 Rmu_sc0005539.1_g000014 Rmu_sc0005539.1_g000032 Rmu_sc0006018.1_g000006 Rmu_sc0006737.1_g000020 Rmu_sc0007485.1_g000002 Rmu_sc0008729.1_g000002 Rmu_sc0008729.1_g000003 Rmu_sc0038822.1_g000001 Rmu_ssc0000398.1_g000025
rosa_roxburghii Rroxscaffold_1G00035090 Rroxscaffold_1G00035630 Rroxscaffold_1G00035640 Rroxscaffold_1G00035660 Rroxscaffold_1G00035680 Rroxscaffold_1G00035730 Rroxscaffold_1G00035750 Rroxscaffold_1G00035770 Rroxscaffold_1G00039150 Rroxscaffold_1G00039190 Rroxscaffold_1G00039220 Rroxscaffold_1G00039260 Rroxscaffold_4G00328910 Rroxscaffold_4G00328950 Rroxscaffold_4G00328960 Rroxscaffold_4G00330890
rosa_rugosa Rorug01G0009800 Rorug01G0010000.1 Rorug01G0010200 Rorug01G0012100 Rorug01G0023500 Rorug01G0023600 Rorug01G0023700 Rorug01G0024700 Rorug05G0192000 Rorug05G0192200 Rorug05G0222400 Rorug05G0222500 Rorug05G0222600.1 Rorug05G0222700.1 Rorug05G0222800.1 Rorug05G0222900.1 Rorug05G0223000.1 Rorug05G0223100.1 Rorug05G0223200 Rorug05G0223600 Rorug05G0226800 Rorug05G0226900
rosa_samantha Rh1CG019600 Rh1DG015000 Rh1DG015300 Rh1DG016900 Rh5CG315200 Rh5CG338700 Rh5DG277100 Rh5DG291500 Rh5DG292100 Rh5DG292200 Rh5DG292400 Rh5DG292600 Rh5DG322100 Rh5DG322200 Rh5DG323100 Rh5DG323300 Rh5DG326700 Rh5DG326900 Rh5DG327000
rosa_wichuraiana Rw0G021580 Rw1G001320 Rw1G001420 Rw1G002820 Rw1G002840 Rw1G002870 Rw5G024800 Rw5G026160 Rw5G026170 Rw5G026180 Rw5G026210 Rw5G026230 Rw5G028170 Rw5G028190 Rw5G028210 Rw5G028230 Rw5G028240 Rw5G028260 Rw5G028280 Rw5G028370 Rw5G028380 Rw5G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 306, 319
AcsI RAATTY 2 cut(s) 137, 271
AcuI CTGAAG 1 cut(s) 485
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 2 cut(s) 227, 274
AgsI TTSAA 3 cut(s) 11, 412, 434
AhdI GACNNNNNGTC 2 cut(s) 287, 618
AjnI CCWGG 2 cut(s) 226, 318
AluBI AGCT 5 cut(s) 257, 341, 469, 581, 596
AluI AGCT 5 cut(s) 257, 341, 469, 581, 596
Alw26I GTCTC 3 cut(s) 79, 97, 294
AlwI GGATC 2 cut(s) 306, 319
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 3 cut(s) 254, 525, 593
ApoI RAATTY 2 cut(s) 137, 271
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 1 cut(s) 620
AsuHPI GGTGA 1 cut(s) 578
AvaII GGWCC 1 cut(s) 620
BamHI GGATCC 1 cut(s) 311
BauI CACGAG 1 cut(s) 660
BbvI GCAGC 3 cut(s) 266, 512, 605
BccI CCATC 2 cut(s) 624, 671
BciT130I CCWGG 2 cut(s) 228, 320
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 3 cut(s) 79, 97, 294
BfaI CTAG 2 cut(s) 279, 284
BfoI RGCGCY 1 cut(s) 526
BisI GCNGC 3 cut(s) 255, 526, 594
BlsI GCNGC 3 cut(s) 256, 527, 595
Bme1390I CCNGG 2 cut(s) 228, 320
Bme18I GGWCC 1 cut(s) 620
BmeRI GACNNNNNGTC 2 cut(s) 287, 618
BmgT120I GGNCC 1 cut(s) 620
BmiI GGNNCC 3 cut(s) 313, 561, 621
BmrFI CCNGG 2 cut(s) 228, 320
BmrI ACTGGG 1 cut(s) 565
BmsI GCATC 4 cut(s) 6, 158, 241, 430
BmuI ACTGGG 1 cut(s) 565
BpmI CTGGAG 2 cut(s) 169, 210
BpuEI CTTGAG 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 433
BsaI GGTCTC 2 cut(s) 79, 294
BsaJI CCNNGG 3 cut(s) 318, 319, 372
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 274
Bse1I ACTGG 1 cut(s) 560
Bse8I GATNNNNATC 1 cut(s) 433
BseBI CCWGG 2 cut(s) 228, 320
BseDI CCNNGG 3 cut(s) 318, 319, 372
BseJI GATNNNNATC 1 cut(s) 433
BseLI CCNNNNNNNGG 2 cut(s) 227, 274
BseNI ACTGG 1 cut(s) 560
BseRI GAGGAG 3 cut(s) 210, 213, 684
BseXI GCAGC 3 cut(s) 266, 512, 605
BsgI GTGCAG 1 cut(s) 511
BshFI GGCC 1 cut(s) 160
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 2 cut(s) 227, 274
BsmAI GTCTC 3 cut(s) 79, 97, 294
BsmFI GGGAC 1 cut(s) 566
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 1 cut(s) 160
Bso31I GGTCTC 2 cut(s) 79, 294
Bsp143I GATC 4 cut(s) 199, 311, 394, 501
BspANI GGCC 1 cut(s) 160
BspLI GGNNCC 3 cut(s) 313, 561, 621
BspPI GGATC 2 cut(s) 306, 319
BspTNI GGTCTC 2 cut(s) 79, 294
BsrI ACTGG 1 cut(s) 560
BssECI CCNNGG 3 cut(s) 318, 319, 372
BssMI GATC 4 cut(s) 199, 311, 394, 501
BssSI CACGAG 1 cut(s) 660
BssT1I CCWWGG 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 660
Bst2UI CCWGG 2 cut(s) 228, 320
Bst4CI ACNGT 4 cut(s) 25, 206, 248, 616
BstAPI GCANNNNNTGC 1 cut(s) 65
BstENI CCTNNNNNAGG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 526
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 4 cut(s) 202, 314, 397, 504
BstMAI GTCTC 3 cut(s) 79, 97, 294
BstMBI GATC 4 cut(s) 199, 311, 394, 501
BstMWI GCNNNNNNNGC 5 cut(s) 65, 263, 338, 362, 578
BstNI CCWGG 2 cut(s) 228, 320
BstSCI CCNGG 2 cut(s) 226, 318
BstV1I GCAGC 3 cut(s) 266, 512, 605
BstX2I RGATCY 1 cut(s) 311
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 311
BsuRI GGCC 1 cut(s) 160
BtgZI GCGATG 1 cut(s) 643
BtsIMutI CAGTG 1 cut(s) 202
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 1 cut(s) 620
Csp6I GTAC 1 cut(s) 76
CspCI CAANNNNNGTGG 2 cut(s) 636, 671
CviQI GTAC 1 cut(s) 76
DpnI GATC 4 cut(s) 201, 313, 396, 503
DpnII GATC 4 cut(s) 199, 311, 394, 501
DriI GACNNNNNGTC 2 cut(s) 287, 618
Eam1105I GACNNNNNGTC 2 cut(s) 287, 618
Eco130I CCWWGG 1 cut(s) 372
Eco31I GGTCTC 2 cut(s) 79, 294
Eco47I GGWCC 1 cut(s) 620
Eco57I CTGAAG 1 cut(s) 485
EcoNI CCTNNNNNAGG 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 226, 318
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaiI YATR 1 cut(s) 335
FaqI GGGAC 1 cut(s) 566
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 3 cut(s) 255, 526, 594
Fsp4HI GCNGC 3 cut(s) 255, 526, 594
FspBI CTAG 2 cut(s) 279, 284
GlaI GCGC 1 cut(s) 524
GluI GCNGC 3 cut(s) 255, 526, 594
GsuI CTGGAG 2 cut(s) 169, 210
HaeII RGCGCY 1 cut(s) 526
HaeIII GGCC 1 cut(s) 160
HhaI GCGC 1 cut(s) 525
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 7 cut(s) 182, 288, 368, 412, 434, 460, 658
HpaI GTTAAC 1 cut(s) 244
HphI GGTGA 1 cut(s) 578
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 5 cut(s) 174, 417, 439, 465, 612
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 3 cut(s) 49, 79, 541
HpyCH4III ACNGT 4 cut(s) 25, 206, 248, 616
HpyCH4V TGCA 4 cut(s) 254, 443, 528, 593
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 263, 338, 362, 578
HspAI GCGC 1 cut(s) 523
Ksp22I TGATCA 1 cut(s) 199
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 4 cut(s) 199, 311, 394, 501
LmnI GCTCC 2 cut(s) 223, 703
Lsp1109I GCAGC 3 cut(s) 266, 512, 605
LweI GCATC 4 cut(s) 6, 158, 241, 430
MaeI CTAG 2 cut(s) 279, 284
MalI GATC 4 cut(s) 201, 313, 396, 503
MboI GATC 4 cut(s) 199, 311, 394, 501
MboII GAAGA 1 cut(s) 523
MflI RGATCY 1 cut(s) 311
MluCI AATT 5 cut(s) 137, 208, 271, 402, 484
MlyI GAGTC 3 cut(s) 176, 297, 652
MmeI TCCRAC 1 cut(s) 23
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 228, 320
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 2 cut(s) 228, 320
MwoI GCNNNNNNNGC 5 cut(s) 65, 263, 338, 362, 578
NdeII GATC 4 cut(s) 199, 311, 394, 501
NlaIV GGNNCC 3 cut(s) 313, 561, 621
PasI CCCWGGG 1 cut(s) 319
PctI GAATGC 1 cut(s) 33
PfeI GAWTC 4 cut(s) 368, 412, 434, 460
PkrI GCNGC 3 cut(s) 256, 527, 595
PleI GAGTC 3 cut(s) 176, 296, 652
PpsI GAGTC 3 cut(s) 176, 296, 652
PpuMI RGGWCCY 1 cut(s) 620
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 2 cut(s) 226, 318
PspGI CCWGG 2 cut(s) 226, 318
PspN4I GGNNCC 3 cut(s) 313, 561, 621
PspPI GGNCC 1 cut(s) 620
PspPPI RGGWCCY 1 cut(s) 620
PsuI RGATCY 1 cut(s) 311
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 3 cut(s) 255, 526, 594
Sau3AI GATC 4 cut(s) 199, 311, 394, 501
Sau96I GGNCC 1 cut(s) 620
SchI GAGTC 3 cut(s) 176, 297, 652
ScrFI CCNGG 2 cut(s) 228, 320
SfaNI GCATC 4 cut(s) 6, 158, 241, 430
SinI GGWCC 1 cut(s) 620
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 5 cut(s) 137, 208, 271, 402, 484
SspMI CTAG 2 cut(s) 279, 284
StyD4I CCNGG 2 cut(s) 226, 318
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 4 cut(s) 25, 206, 248, 616
TaqI TCGA 2 cut(s) 152, 481
TasI AATT 5 cut(s) 137, 208, 271, 402, 484
TfiI GAWTC 4 cut(s) 368, 412, 434, 460
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 209
TseI GCWGC 3 cut(s) 254, 525, 593
TspDTI ATGAA 1 cut(s) 396
TspRI CASTG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 620
XagI CCTNNNNNAGG 1 cut(s) 225
XapI RAATTY 2 cut(s) 137, 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XspI CTAG 2 cut(s) 279, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.