FvH4_1g21383

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000176
Physical Location & Seq
Reverse (-)
13339239 .. 13343117
3879 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21383.t1

Sequence Viewer

Length: 309 bp
ATGGCCACAGTGGAGAGCTCCATGCTGAATCTGCTGGCCTATTGGCATGAGAGGGCCGCCCATACTGGTGCGGCCATTAATTTGGTGGAATTTTTGTCTGAAAGTACCCATGAGGACGAGATCCGAATGGAAAACCTCGGCCCTGCTCCGGCCGAGTTAGAAGACACTCCAGCGGAAGTGGAAGATCCCAGAGAAGAACTCAATCTTGAGCCTATTGATAGGCCACGGTTCATGAGTGCCCATGATGGCGAATATCGAAGTAATTTTGAAACAAAATTGCATGAAAAGAAAACAAGAAGGGTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

103

Amino Acids

11.76

Weight (kDa)

4.86

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 57, 71, 173
AclWI GGATC 2 cut(s) 115, 179
AcoI YGGCCR 3 cut(s) 3, 72, 150
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 1 cut(s) 269
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw21I GWGCWC 1 cut(s) 20
AlwI GGATC 2 cut(s) 115, 179
AoxI GGCC 7 cut(s) 3, 36, 54, 72, 139, 150, 221
ApoI RAATTY 1 cut(s) 89
AseI ATTAAT 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 54, 140
BaeGI GKGCMC 1 cut(s) 241
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 20
BccI CCATC 1 cut(s) 239
BisI GCNGC 2 cut(s) 57, 72
BlsI GCNGC 2 cut(s) 58, 73
BmgT120I GGNCC 2 cut(s) 54, 140
BpiI GAAGAC 1 cut(s) 168
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BpmI CTGGAG 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 136, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 136, 224
BseLI CCNNNNNNNGG 1 cut(s) 148
BseNI ACTGG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 241
BseX3I CGGCCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 7 cut(s) 5, 38, 56, 74, 141, 152, 223
BsiEI CGRYCG 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 148
BsnI GGCC 7 cut(s) 5, 38, 56, 74, 141, 152, 223
Bsp1286I GDGCHC 2 cut(s) 20, 241
Bsp143I GATC 2 cut(s) 120, 184
BspACI CCGC 3 cut(s) 57, 71, 173
BspANI GGCC 7 cut(s) 5, 38, 56, 74, 141, 152, 223
BspHI TCATGA 1 cut(s) 231
BspPI GGATC 2 cut(s) 115, 179
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 136, 224
BssMI GATC 2 cut(s) 120, 184
Bst4CI ACNGT 2 cut(s) 10, 228
BstC8I GCNNGC 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 224
BstKTI GATC 2 cut(s) 123, 187
BstMBI GATC 2 cut(s) 120, 184
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 2 cut(s) 120, 184
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 2 cut(s) 120, 184
BstZI CGGCCG 1 cut(s) 150
BsuRI GGCC 7 cut(s) 5, 38, 56, 74, 141, 152, 223
BtgI CCRYGG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 36
CciI TCATGA 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 54, 140
Csp6I GTAC 1 cut(s) 105
CviAII CATG 6 cut(s) 22, 47, 110, 232, 242, 281
CviJI RGCY 9 cut(s) 5, 18, 38, 56, 74, 141, 152, 211, 223
CviKI_1 RGCY 9 cut(s) 5, 18, 38, 56, 74, 141, 152, 211, 223
CviQI GTAC 1 cut(s) 105
DpnI GATC 2 cut(s) 122, 186
DpnII GATC 2 cut(s) 120, 184
EaeI YGGCCR 3 cut(s) 3, 72, 150
EagI CGGCCG 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 18
EclXI CGGCCG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 20
Eco52I CGGCCG 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 20
FaeI CATG 6 cut(s) 25, 50, 113, 235, 245, 284
FaiI YATR 7 cut(s) 23, 48, 63, 111, 233, 243, 282
FatI CATG 6 cut(s) 21, 46, 109, 231, 241, 280
Fnu4HI GCNGC 2 cut(s) 57, 72
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 57, 72
GluI GCNGC 2 cut(s) 57, 72
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 7 cut(s) 5, 38, 56, 74, 141, 152, 223
HapII CCGG 1 cut(s) 149
Hin1II CATG 6 cut(s) 25, 50, 113, 235, 245, 284
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 100, 125
Hpy188III TCNNGA 2 cut(s) 206, 232
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 2 cut(s) 10, 228
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
Hsp92II CATG 6 cut(s) 25, 50, 113, 235, 245, 284
Kzo9I GATC 2 cut(s) 120, 184
LmnI GCTCC 2 cut(s) 23, 151
LpnPI CCDG 6 cut(s) 20, 51, 156, 162, 183, 202
MalI GATC 2 cut(s) 122, 186
MboI GATC 2 cut(s) 120, 184
MboII GAAGA 3 cut(s) 173, 194, 206
MflI RGATCY 2 cut(s) 120, 184
MhlI GDGCHC 2 cut(s) 20, 241
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 79, 89, 262, 275
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 45, 106, 146
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 2 cut(s) 120, 184
NlaIII CATG 6 cut(s) 25, 50, 113, 235, 245, 284
NmeAIII GCCGAG 2 cut(s) 117, 178
PagI TCATGA 1 cut(s) 231
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 2 cut(s) 58, 73
PshBI ATTAAT 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 20
PspPI GGNCC 2 cut(s) 54, 140
PsuI RGATCY 2 cut(s) 120, 184
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 66
SacI GAGCTC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 2 cut(s) 57, 72
Sau3AI GATC 2 cut(s) 120, 184
Sau96I GGNCC 2 cut(s) 54, 140
SduI GDGCHC 2 cut(s) 20, 241
SetI ASST 2 cut(s) 20, 138
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 4 cut(s) 79, 89, 262, 275
SsiI CCGC 3 cut(s) 57, 71, 173
SstI GAGCTC 1 cut(s) 20
TaaI ACNGT 2 cut(s) 10, 228
TaqI TCGA 1 cut(s) 256
TasI AATT 4 cut(s) 79, 89, 262, 275
TauI GCSGC 2 cut(s) 59, 74
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 15
TspDTI ATGAA 3 cut(s) 220, 293, 297
TspRI CASTG 1 cut(s) 15
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.