Rmu_sc0026814.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026814.1
OG0000176
Physical Location & Seq
Forward (+)
277 .. 729
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026814.1_g000001.1.cds

Sequence Viewer

Length: 453 bp
atggattacgacttcccagaggaaggattagaggccttccactcgctgtacgaaagactatcatcgtatttagtggaaaaagaggcctatgagcgagtctggaccttagaggccgtcaatgaagacttctccgatcaaaagcaagaggatgaggtggatattcagctcgccccggcggcgctggatgatacacctcctaaagtcagagaccctaccgagaaggttaatttgggaacagcagatgagcccatggaggtggccatcagtgcttacttagagcctaacaagaaacagcggctcattgacctgttactagagttcaaagattacttcgcggaaaagtatgaaggcatgcctggcctgtcaccggacttggtttgccatcaactgccaacactccctgacaagaggcatgtgaaacaggaaccacgaagaatgaattcagaaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

150

Amino Acids

17.39

Weight (kDa)

4.45

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 335
AciI CCGC 3 cut(s) 176, 295, 335
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 1 cut(s) 439
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 23, 367
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 1 cut(s) 355
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 201
AoxI GGCC 5 cut(s) 33, 84, 111, 258, 358
ApoI RAATTY 1 cut(s) 439
Asp700I GAANNNNTTC 1 cut(s) 439
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 102
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 357
AvaII GGWCC 1 cut(s) 102
BalI TGGCCA 1 cut(s) 260
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 129
BccI CCATC 2 cut(s) 269, 390
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 357
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 314
BfoI RGCGCY 1 cut(s) 182
BglI GCCNNNNNGGC 1 cut(s) 176
BisI GCNGC 2 cut(s) 177, 296
BlsI GCNGC 2 cut(s) 178, 297
Bme1390I CCNGG 2 cut(s) 173, 357
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 426
BmrFI CCNGG 2 cut(s) 173, 357
BpiI GAAGAC 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 171, 249
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 367
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 171, 249
BseGI GGATG 2 cut(s) 154, 190
BseLI CCNNNNNNNGG 2 cut(s) 23, 367
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 5 cut(s) 35, 86, 113, 260, 360
BsiSI CCGG 2 cut(s) 173, 368
BslI CCNNNNNNNGG 2 cut(s) 23, 367
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 5 cut(s) 35, 86, 113, 260, 360
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 133
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 3 cut(s) 176, 295, 335
BspANI GGCC 5 cut(s) 35, 86, 113, 260, 360
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 426
BspTNI GGTCTC 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 171, 249
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 357
BstC8I GCNNGC 2 cut(s) 168, 353
BstDEI CTNAG 2 cut(s) 106, 274
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 154, 190
BstFNI CGCG 1 cut(s) 335
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 3 cut(s) 176, 266, 357
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 2 cut(s) 355, 416
BstSCI CCNGG 2 cut(s) 171, 355
BstUI CGCG 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 129
BstXI CCANNNNNNTGG 1 cut(s) 256
BsuRI GGCC 5 cut(s) 35, 86, 113, 260, 360
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 154, 190
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 168, 353
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 49
CviAII CATG 3 cut(s) 250, 352, 413
CviJI RGCY 9 cut(s) 35, 86, 113, 166, 247, 260, 280, 298, 360
CviKI_1 RGCY 9 cut(s) 35, 86, 113, 166, 247, 260, 280, 298, 360
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 2 cut(s) 106, 274
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 249
Eco147I AGGCCT 2 cut(s) 35, 86
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 3 cut(s) 253, 355, 416
FaiI YATR 5 cut(s) 90, 251, 345, 353, 414
FatI CATG 3 cut(s) 249, 351, 412
Fnu4HI GCNGC 2 cut(s) 177, 296
FokI GGATG 2 cut(s) 161, 197
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 177, 296
FspBI CTAG 1 cut(s) 314
GlaI GCGC 1 cut(s) 180
GluI GCNGC 2 cut(s) 177, 296
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 5 cut(s) 35, 86, 113, 260, 360
HapII CCGG 2 cut(s) 173, 368
HhaI GCGC 1 cut(s) 181
Hin1II CATG 3 cut(s) 253, 355, 416
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 1 cut(s) 96
HpaII CCGG 2 cut(s) 173, 368
HphI GGTGA 1 cut(s) 357
Hpy188I TCNGA 3 cut(s) 133, 206, 445
Hpy188III TCNNGA 1 cut(s) 100
HpyAV CCTTC 4 cut(s) 17, 46, 214, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 266, 357
HpyF3I CTNAG 2 cut(s) 106, 274
Hsp92II CATG 3 cut(s) 253, 355, 416
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 314
MaeIII GTNAC 2 cut(s) 309, 363
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 2 cut(s) 134, 444
MhlI GDGCHC 1 cut(s) 249
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 2 cut(s) 226, 439
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 9 cut(s) 13, 25, 76, 103, 139, 145, 204, 247, 402
Mox20I TGGCCA 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 439
MscI TGGCCA 1 cut(s) 260
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 254
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 2 cut(s) 173, 368
MspR9I CCNGG 2 cut(s) 173, 357
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 3 cut(s) 176, 266, 357
NciI CCSGG 1 cut(s) 173
NcoI CCATGG 1 cut(s) 249
NdeII GATC 1 cut(s) 133
NlaIII CATG 3 cut(s) 253, 355, 416
NlaIV GGNNCC 1 cut(s) 426
NmuCI GTSAC 1 cut(s) 363
NspI RCATGY 2 cut(s) 355, 416
PaeI GCATGC 1 cut(s) 355
PceI AGGCCT 2 cut(s) 35, 86
PdmI GAANNNNTTC 1 cut(s) 439
PkrI GCNGC 2 cut(s) 178, 297
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 426
PspPI GGNCC 1 cut(s) 102
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 2 cut(s) 177, 296
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 173, 357
SduI GDGCHC 1 cut(s) 249
SetI ASST 8 cut(s) 107, 156, 168, 196, 225, 258, 309, 452
SinI GGWCC 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 254
SphI GCATGC 1 cut(s) 355
Sse9I AATT 2 cut(s) 226, 439
SseBI AGGCCT 2 cut(s) 35, 86
SsiI CCGC 3 cut(s) 176, 295, 335
SspMI CTAG 1 cut(s) 314
StuI AGGCCT 2 cut(s) 35, 86
StyD4I CCNGG 2 cut(s) 171, 355
StyI CCWWGG 1 cut(s) 249
TasI AATT 2 cut(s) 226, 439
TauI GCSGC 2 cut(s) 179, 298
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 363
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 3 cut(s) 135, 360, 452
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 102
XapI RAATTY 1 cut(s) 439
XceI RCATGY 2 cut(s) 355, 416
XmnI GAANNNNTTC 1 cut(s) 439
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.