FvH4_7g12391

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000176
Physical Location & Seq
Reverse (-)
11276174 .. 11276998
825 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12391.t1

Sequence Viewer

Length: 732 bp
ATGACCCAACGTTTCCGCGAGAATTCAGAAGACGACGAGGCACATTCAGAACCTCGACTTAACCTAGAGGAAGACCGGGACGATGAGCAGGCAGAATCATTCACCTGTAATATGATAGAGGTCTCAGGATGGGATGCTGATGAAGGGTTTAGCAGCGAAGCAGACGCTTTCGCGGAAAGATACGCTCTCCCACCAAACACAACCTGCAGTGAGGCGGATATTCCCGTTAGCGGCGAGGATATCAGTAGCATACCCCCGCCATGCAGCAGCGAAATGGGCCCAGTTCCGGCACAGGCCGACGACGCCCCACAGGTGGAAATTACGAGTAGCATCAAACATAAGCAAACTCTAACCTTCTCCACACCAACTTTGGACATGGCCACTCACATGCGGCCACTGTATATCACGGCCGAAGTCGAAGGAAAAATGATCAACAAGGTCATGGCCGACACCGGTGCCGCGGTCAATGTTGTCACAACCCGTACCATGGGACTCCTAGACATCCTACGCTCGATGATCCAAACCACGTCCTTAACAGTCAAGAACTTCACCGGGCAAGTGTTCAGAACCCTAGGCTTGCTATTCCTACGGGTCAAGGTCGGGCCGGCATCACGGGTTTACACCTTTTTCGTCGCCGAATGCGCTTCCTCTTATAGCATGATTCTTGGCCGAGATTGGATCCACAGAAGTTTTTGCGTGCCTTCCTCCATGCACCAGGAACTCATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag gag-asp_proteas

Protein Analysis

244

Amino Acids

26.9

Weight (kDa)

4.58

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 455
AccII CGCG 3 cut(s) 18, 173, 461
AciI CCGC 8 cut(s) 16, 173, 215, 231, 257, 391, 459, 461
AclI AACGTT 1 cut(s) 10
AclWI GGATC 3 cut(s) 511, 673, 686
AcoI YGGCCR 5 cut(s) 378, 392, 408, 444, 667
AcsI RAATTY 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 4 cut(s) 230, 286, 313, 487
AgeI ACCGGT 1 cut(s) 452
AjiI CACGTC 1 cut(s) 528
AjnI CCWGG 1 cut(s) 714
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 3 cut(s) 511, 673, 686
AoxI GGCC 8 cut(s) 277, 294, 378, 392, 408, 444, 602, 667
ApaI GGGCCC 1 cut(s) 281
ApeKI GCWGC 3 cut(s) 153, 264, 267
ApoI RAATTY 1 cut(s) 22
AsiGI ACCGGT 1 cut(s) 452
AspA2I CCTAGG 1 cut(s) 571
AspLEI GCGC 1 cut(s) 644
AspS9I GGNCC 3 cut(s) 277, 278, 602
AsuC2I CCSGG 2 cut(s) 77, 553
AsuHPI GGTGA 2 cut(s) 94, 541
AvrII CCTAGG 1 cut(s) 571
BaeGI GKGCMC 1 cut(s) 281
BalI TGGCCA 1 cut(s) 380
BamHI GGATCC 1 cut(s) 678
BanI GGYRCC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 281
BbsI GAAGAC 2 cut(s) 36, 78
BbvI GCAGC 3 cut(s) 165, 276, 279
BccI CCATC 1 cut(s) 123
BceAI ACGGC 1 cut(s) 423
BcgI CGANNNNNNTGC 2 cut(s) 437, 471
BciT130I CCWGG 1 cut(s) 716
BclI TGATCA 1 cut(s) 429
BcnI CCSGG 2 cut(s) 77, 553
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 3 cut(s) 65, 497, 572
BfmI CTRYAG 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 212
BisI GCNGC 6 cut(s) 154, 232, 265, 268, 392, 459
BlnI CCTAGG 1 cut(s) 571
BlsI GCNGC 6 cut(s) 155, 233, 266, 269, 393, 460
Bme1390I CCNGG 3 cut(s) 77, 553, 716
BmgBI CACGTC 1 cut(s) 528
BmgT120I GGNCC 3 cut(s) 277, 278, 602
BmiI GGNNCC 3 cut(s) 279, 457, 680
BmrFI CCNGG 3 cut(s) 77, 553, 716
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 3 cut(s) 124, 339, 617
BmuI ACTGGG 1 cut(s) 275
BpiI GAAGAC 2 cut(s) 36, 78
BpuMI CCSGG 2 cut(s) 77, 553
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 3 cut(s) 459, 486, 571
BsaWI WCCGGW 1 cut(s) 452
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 286, 313, 487
Bse118I RCCGGY 2 cut(s) 452, 604
Bse1I ACTGG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 716
BseDI CCNNGG 3 cut(s) 459, 486, 571
BseGI GGATG 3 cut(s) 134, 139, 501
BseLI CCNNNNNNNGG 4 cut(s) 230, 286, 313, 487
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 281
BseX3I CGGCCG 1 cut(s) 408
BseXI GCAGC 3 cut(s) 165, 276, 279
Bsh1236I CGCG 3 cut(s) 18, 173, 461
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 8 cut(s) 279, 296, 380, 394, 410, 446, 604, 669
BshNI GGYRCC 1 cut(s) 455
BshTI ACCGGT 1 cut(s) 452
BsiEI CGRYCG 1 cut(s) 411
BsiSI CCGG 5 cut(s) 76, 287, 453, 552, 605
BslFI GGGAC 2 cut(s) 92, 504
BslI CCNNNNNNNGG 4 cut(s) 230, 286, 313, 487
BsmAI GTCTC 1 cut(s) 127
BsmFI GGGAC 2 cut(s) 92, 504
BsmI GAATGC 1 cut(s) 644
BsnI GGCC 8 cut(s) 279, 296, 380, 394, 410, 446, 604, 669
Bso31I GGTCTC 1 cut(s) 127
Bsp120I GGGCCC 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 3 cut(s) 429, 516, 678
Bsp19I CCATGG 1 cut(s) 486
BspACI CCGC 8 cut(s) 16, 173, 215, 231, 257, 391, 459, 461
BspANI GGCC 8 cut(s) 279, 296, 380, 394, 410, 446, 604, 669
BspCNI CTCAG 1 cut(s) 137
BspFNI CGCG 3 cut(s) 18, 173, 461
BspHI TCATGA 1 cut(s) 723
BspLI GGNNCC 3 cut(s) 279, 457, 680
BspMAI CTGCAG 1 cut(s) 209
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 3 cut(s) 511, 673, 686
BspT107I GGYRCC 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 127
BsrFI RCCGGY 2 cut(s) 452, 604
BsrI ACTGG 1 cut(s) 281
BssAI RCCGGY 2 cut(s) 452, 604
BssECI CCNNGG 3 cut(s) 459, 486, 571
BssMI GATC 3 cut(s) 429, 516, 678
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 2 cut(s) 486, 571
Bst2UI CCWGG 1 cut(s) 716
Bst4CI ACNGT 2 cut(s) 399, 538
BstACI GRCGYC 1 cut(s) 303
BstC8I GCNNGC 4 cut(s) 90, 578, 606, 698
BstDEI CTNAG 1 cut(s) 124
BstDSI CCRYGG 2 cut(s) 459, 486
BstF5I GGATG 3 cut(s) 134, 139, 501
BstFNI CGCG 3 cut(s) 18, 173, 461
BstHHI GCGC 1 cut(s) 644
BstKTI GATC 3 cut(s) 432, 519, 681
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 3 cut(s) 429, 516, 678
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 3 cut(s) 276, 302, 641
BstNI CCWGG 1 cut(s) 716
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 3 cut(s) 75, 551, 714
BstSFI CTRYAG 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 281
BstUI CGCG 3 cut(s) 18, 173, 461
BstV1I GCAGC 3 cut(s) 165, 276, 279
BstV2I GAAGAC 2 cut(s) 36, 78
BstX2I RGATCY 1 cut(s) 678
BstYI RGATCY 1 cut(s) 678
BstZI CGGCCG 1 cut(s) 408
BsuRI GGCC 8 cut(s) 279, 296, 380, 394, 410, 446, 604, 669
BtgI CCRYGG 2 cut(s) 459, 486
BtrI CACGTC 1 cut(s) 528
BtsCI GGATG 3 cut(s) 134, 139, 501
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 2 cut(s) 214, 395
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 4 cut(s) 90, 578, 606, 698
CciI TCATGA 1 cut(s) 723
CfoI GCGC 1 cut(s) 644
Cfr10I RCCGGY 2 cut(s) 452, 604
Cfr13I GGNCC 3 cut(s) 277, 278, 602
Cfr42I CCGCGG 1 cut(s) 462
CseI GACGC 2 cut(s) 173, 311
Csp6I GTAC 1 cut(s) 483
CspAI ACCGGT 1 cut(s) 452
CviAII CATG 8 cut(s) 261, 376, 388, 442, 487, 658, 709, 724
CviJI RGCY 9 cut(s) 279, 296, 380, 394, 410, 446, 576, 604, 669
CviKI_1 RGCY 9 cut(s) 279, 296, 380, 394, 410, 446, 576, 604, 669
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 1 cut(s) 124
DpnI GATC 3 cut(s) 431, 518, 680
DpnII GATC 3 cut(s) 429, 516, 678
EaeI YGGCCR 5 cut(s) 378, 392, 408, 444, 667
EagI CGGCCG 1 cut(s) 408
EciI GGCGGA 1 cut(s) 230
EclXI CGGCCG 1 cut(s) 408
Eco130I CCWWGG 2 cut(s) 486, 571
Eco24I GRGCYC 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 127
Eco32I GATATC 1 cut(s) 241
Eco52I CGGCCG 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 714
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 2 cut(s) 486, 571
EcoT38I GRGCYC 1 cut(s) 281
ErhI CCWWGG 2 cut(s) 486, 571
FaeI CATG 8 cut(s) 264, 379, 391, 445, 490, 661, 712, 727
FaqI GGGAC 2 cut(s) 92, 504
FatI CATG 8 cut(s) 260, 375, 387, 441, 486, 657, 708, 723
FauI CCCGC 1 cut(s) 264
FbaI TGATCA 1 cut(s) 429
Fnu4HI GCNGC 6 cut(s) 154, 232, 265, 268, 392, 459
FokI GGATG 3 cut(s) 141, 146, 488
FriOI GRGCYC 1 cut(s) 281
Fsp4HI GCNGC 6 cut(s) 154, 232, 265, 268, 392, 459
FspBI CTAG 3 cut(s) 65, 497, 572
GlaI GCGC 1 cut(s) 643
GluI GCNGC 6 cut(s) 154, 232, 265, 268, 392, 459
HaeIII GGCC 8 cut(s) 279, 296, 380, 394, 410, 446, 604, 669
HapII CCGG 5 cut(s) 76, 287, 453, 552, 605
HgaI GACGC 2 cut(s) 173, 311
HhaI GCGC 1 cut(s) 644
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 8 cut(s) 264, 379, 391, 445, 490, 661, 712, 727
Hin6I GCGC 1 cut(s) 642
HinP1I GCGC 1 cut(s) 642
HinfI GANTC 3 cut(s) 95, 492, 661
HpaII CCGG 5 cut(s) 76, 287, 453, 552, 605
HphI GGTGA 2 cut(s) 94, 541
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 3 cut(s) 28, 49, 566
Hpy188III TCNNGA 3 cut(s) 126, 541, 724
Hpy8I GTNNAC 1 cut(s) 619
Hpy99I CGWCG 4 cut(s) 38, 302, 305, 635
HpyAV CCTTC 4 cut(s) 137, 364, 413, 711
HpyCH4III ACNGT 2 cut(s) 399, 538
HpyCH4IV ACGT 2 cut(s) 10, 527
HpyCH4V TGCA 3 cut(s) 207, 264, 712
HpyF10VI GCNNNNNNNGC 3 cut(s) 276, 302, 641
HpyF3I CTNAG 1 cut(s) 124
HpySE526I ACGT 2 cut(s) 10, 527
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 8 cut(s) 264, 379, 391, 445, 490, 661, 712, 727
HspAI GCGC 1 cut(s) 642
KroI GCCGGC 1 cut(s) 604
KroNI GCCGGC 1 cut(s) 606
Ksp22I TGATCA 1 cut(s) 429
KspI CCGCGG 1 cut(s) 462
Kzo9I GATC 3 cut(s) 429, 516, 678
Lsp1109I GCAGC 3 cut(s) 165, 276, 279
LweI GCATC 3 cut(s) 124, 339, 617
MaeI CTAG 3 cut(s) 65, 497, 572
MaeII ACGT 2 cut(s) 10, 527
MaeIII GTNAC 1 cut(s) 472
MalI GATC 3 cut(s) 431, 518, 680
MboI GATC 3 cut(s) 429, 516, 678
MboII GAAGA 2 cut(s) 41, 83
MflI RGATCY 1 cut(s) 678
MhlI GDGCHC 1 cut(s) 281
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 2 cut(s) 22, 318
MluNI TGGCCA 1 cut(s) 380
MlyI GAGTC 1 cut(s) 486
MnlI CCTC 8 cut(s) 31, 61, 63, 112, 205, 229, 658, 715
Mox20I TGGCCA 1 cut(s) 380
MroNI GCCGGC 1 cut(s) 604
MscI TGGCCA 1 cut(s) 380
MseI TTAA 2 cut(s) 60, 533
MslI CAYNNNNRTG 1 cut(s) 386
Msp20I TGGCCA 1 cut(s) 380
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 5 cut(s) 76, 287, 453, 552, 605
MspR9I CCNGG 3 cut(s) 77, 553, 716
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 1 cut(s) 716
MvnI CGCG 3 cut(s) 18, 173, 461
MwoI GCNNNNNNNGC 3 cut(s) 276, 302, 641
NaeI GCCGGC 1 cut(s) 606
NciI CCSGG 2 cut(s) 77, 553
NcoI CCATGG 1 cut(s) 486
NdeII GATC 3 cut(s) 429, 516, 678
NgoMIV GCCGGC 1 cut(s) 604
NlaIII CATG 8 cut(s) 264, 379, 391, 445, 490, 661, 712, 727
NlaIV GGNNCC 3 cut(s) 279, 457, 680
NmeAIII GCCGAG 1 cut(s) 695
NmuCI GTSAC 1 cut(s) 472
NspI RCATGY 1 cut(s) 391
PagI TCATGA 1 cut(s) 723
PctI GAATGC 1 cut(s) 644
PdiI GCCGGC 1 cut(s) 606
PfeI GAWTC 2 cut(s) 95, 661
PinAI ACCGGT 1 cut(s) 452
PkrI GCNGC 6 cut(s) 155, 233, 266, 269, 393, 460
PleI GAGTC 1 cut(s) 486
PpsI GAGTC 1 cut(s) 486
Psp1406I AACGTT 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 714
PspGI CCWGG 1 cut(s) 714
PspN4I GGNNCC 3 cut(s) 279, 457, 680
PspOMI GGGCCC 1 cut(s) 277
PspPI GGNCC 3 cut(s) 277, 278, 602
PstI CTGCAG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 678
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
RseI CAYNNNNRTG 1 cut(s) 386
SacII CCGCGG 1 cut(s) 462
SaqAI TTAA 2 cut(s) 60, 533
SatI GCNGC 6 cut(s) 154, 232, 265, 268, 392, 459
Sau3AI GATC 3 cut(s) 429, 516, 678
Sau96I GGNCC 3 cut(s) 277, 278, 602
SchI GAGTC 1 cut(s) 486
ScrFI CCNGG 3 cut(s) 77, 553, 716
SduI GDGCHC 1 cut(s) 281
SfaNI GCATC 3 cut(s) 124, 339, 617
SfcI CTRYAG 1 cut(s) 205
Sfr303I CCGCGG 1 cut(s) 462
SgrAI CRCCGGYG 1 cut(s) 452
SgrBI CCGCGG 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 386
Sse9I AATT 2 cut(s) 22, 318
SsiI CCGC 8 cut(s) 16, 173, 215, 231, 257, 391, 459, 461
SspMI CTAG 3 cut(s) 65, 497, 572
StyD4I CCNGG 3 cut(s) 75, 551, 714
StyI CCWWGG 2 cut(s) 486, 571
TaaI ACNGT 2 cut(s) 399, 538
TaiI ACGT 2 cut(s) 13, 530
TaqI TCGA 3 cut(s) 55, 417, 512
TasI AATT 2 cut(s) 22, 318
TauI GCSGC 3 cut(s) 234, 394, 461
TfiI GAWTC 2 cut(s) 95, 661
Tru1I TTAA 2 cut(s) 60, 533
Tru9I TTAA 2 cut(s) 60, 533
TscAI CASTG 2 cut(s) 214, 402
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 3 cut(s) 153, 264, 267
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 1 cut(s) 156
TspRI CASTG 2 cut(s) 214, 402
XapI RAATTY 1 cut(s) 22
XceI RCATGY 1 cut(s) 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XmaJI CCTAGG 1 cut(s) 571
XspI CTAG 3 cut(s) 65, 497, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.