Rmu_sc0000594.1_g000033

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000594.1
OG0000176
Physical Location & Seq
Forward (+)
109016 .. 109440
425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000594.1_g000033.1.cds

Sequence Viewer

Length: 381 bp
atggattatgaccttccagaggaagggatggaggccttctactcgtacaagatattatcctcgtatatggtggaaaaagaggtctatgatcgagttgcaaccttggaaatagttaacgaggagctctctaaccatgaagaggaagaggaagacattcagctcgccctagcagcattgatgacacatctcctaaagttagggaccctactaagaagtacgtacttagagtctagcgagaaggagaggctcaacgacttattgctggaattcaaggactgctttgcagaaaaatacgaggatatgccagggctgtcaccggacttggtatgccatcagctgccaacactccctgacaagaggcccatgaagcaagagccgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

126

Amino Acids

14.69

Weight (kDa)

4.36

Isoelectric Point (pI)

68.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 3 cut(s) 47, 217, 221
AfiI CCNNNNNNNGG 3 cut(s) 19, 23, 139
AgsI TTSAA 1 cut(s) 271
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 3 cut(s) 124, 160, 337
AluI AGCT 3 cut(s) 124, 160, 337
Alw21I GWGCWC 1 cut(s) 126
AoxI GGCC 2 cut(s) 33, 359
ApeKI GCWGC 2 cut(s) 170, 337
ApoI RAATTY 1 cut(s) 266
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 2 cut(s) 201, 360
AsuHPI GGTGA 1 cut(s) 306
AvaII GGWCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 182, 324
BccI CCATC 2 cut(s) 22, 339
BceAI ACGGC 1 cut(s) 361
BciT130I CCWGG 1 cut(s) 306
BfaI CTAG 2 cut(s) 167, 231
BisI GCNGC 2 cut(s) 171, 338
BlsI GCNGC 2 cut(s) 172, 339
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 2 cut(s) 201, 360
BmiI GGNNCC 2 cut(s) 202, 203
BmrFI CCNGG 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 156
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BsaAI YACGTR 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 102, 305
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 23, 139
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 102, 305
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 3 cut(s) 19, 23, 139
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 182, 324
BshFI GGCC 2 cut(s) 35, 361
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 3 cut(s) 19, 23, 139
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 2 cut(s) 35, 361
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 88
BspANI GGCC 2 cut(s) 35, 361
BspLI GGNNCC 2 cut(s) 202, 203
BssECI CCNNGG 2 cut(s) 102, 305
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 306
Bst6I CTCTTC 2 cut(s) 132, 138
BstBAI YACGTR 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 209, 223
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 170, 367
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstSNI TACGTA 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 182, 324
BstV2I GAAGAC 1 cut(s) 156
BsuRI GGCC 2 cut(s) 35, 361
BtsCI GGATG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 201, 360
Csp6I GTAC 3 cut(s) 46, 216, 220
CviAII CATG 2 cut(s) 134, 364
CviJI RGCY 8 cut(s) 35, 124, 160, 247, 310, 337, 361, 376
CviKI_1 RGCY 8 cut(s) 35, 124, 160, 247, 310, 337, 361, 376
CviQI GTAC 3 cut(s) 46, 216, 220
DdeI CTNAG 2 cut(s) 209, 223
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 132, 138
EarI CTCTTC 2 cut(s) 132, 138
Ecl136II GAGCTC 1 cut(s) 124
Eco105I TACGTA 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 2 cut(s) 137, 367
FaiI YATR 8 cut(s) 9, 66, 68, 87, 135, 302, 328, 365
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 214
FatI CATG 2 cut(s) 133, 363
Fnu4HI GCNGC 2 cut(s) 171, 338
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 2 cut(s) 171, 338
FspBI CTAG 2 cut(s) 167, 231
GluI GCNGC 2 cut(s) 171, 338
HaeIII GGCC 2 cut(s) 35, 361
HapII CCGG 1 cut(s) 317
Hin1II CATG 2 cut(s) 137, 367
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 1 cut(s) 227
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 1 cut(s) 317
HphI GGTGA 1 cut(s) 306
Hpy166II GTNNAC 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 4 cut(s) 17, 23, 46, 232
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 98, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 367
HpyF3I CTNAG 2 cut(s) 209, 223
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 2 cut(s) 137, 367
KflI GGGWCCC 1 cut(s) 201
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 6 cut(s) 30, 248, 291, 318, 330, 363
Lsp1109I GCAGC 2 cut(s) 182, 324
MaeI CTAG 2 cut(s) 167, 231
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 312
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 149, 155, 161
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 1 cut(s) 266
MlyI GAGTC 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 337
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 170, 367
NdeII GATC 1 cut(s) 88
NlaIII CATG 2 cut(s) 137, 367
NlaIV GGNNCC 2 cut(s) 202, 203
NmuCI GTSAC 1 cut(s) 312
PceI AGGCCT 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 153
PkrI GCNGC 2 cut(s) 172, 339
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Ppu21I YACGTR 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 201
Psp124BI GAGCTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 202, 203
PspPI GGNCC 2 cut(s) 201, 360
PspPPI RGGWCCY 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 337
RsaI GTAC 3 cut(s) 47, 217, 221
RsaNI GTAC 3 cut(s) 46, 216, 220
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 171, 338
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 2 cut(s) 201, 360
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 1 cut(s) 126
SetI ASST 7 cut(s) 15, 84, 104, 126, 162, 221, 339
SinI GGWCC 1 cut(s) 201
SnaBI TACGTA 1 cut(s) 219
Sse9I AATT 1 cut(s) 266
SseBI AGGCCT 1 cut(s) 35
SspMI CTAG 2 cut(s) 167, 231
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 102
TaiI ACGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 91
TasI AATT 1 cut(s) 266
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseFI GTSAC 1 cut(s) 312
TseI GCWGC 2 cut(s) 170, 337
Tsp45I GTSAC 1 cut(s) 312
TspDTI ATGAA 2 cut(s) 150, 380
VpaK11BI GGWCC 1 cut(s) 201
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 2 cut(s) 167, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.