Rmu_sc0005652.1_g000020

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005652.1
OG0000176
Physical Location & Seq
Reverse (-)
75488 .. 75832
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005652.1_g000020.1.cds

Sequence Viewer

Length: 345 bp
atgataaagtcgcgactggaaattgtcaacgaggagttttctgaccaggaagaggatgaagaggagatccaggtcgctctggcagcattggatgacatacctccgaaggccagggaccccactgagaaggttaagcttggaaccactgatgagcctatggaagtggctattagtgcttacttagagcctagtgagaaacataggctcatcgacttattaatggaatacaaggactgcttcgaagaaaaatatgaagacatgctcgacctgtccccggacttggtatgccatcagctgccaacacttcctgacaagaggcctgtgaacgggaaccacgaagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

114

Amino Acids

13.15

Weight (kDa)

4.31

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 13
AclWI GGATC 1 cut(s) 61
AfiI CCNNNNNNNGG 4 cut(s) 52, 274, 280, 326
AjnI CCWGG 3 cut(s) 45, 69, 110
AluBI AGCT 2 cut(s) 136, 295
AluI AGCT 2 cut(s) 136, 295
AlwI GGATC 1 cut(s) 61
AoxI GGCC 2 cut(s) 108, 317
ApeKI GCWGC 2 cut(s) 83, 295
AseI ATTAAT 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 275
AsuII TTCGAA 1 cut(s) 240
AvaII GGWCC 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 95, 282
BccI CCATC 1 cut(s) 297
BciT130I CCWGG 3 cut(s) 47, 71, 112
BcnI CCSGG 1 cut(s) 275
BfaI CTAG 1 cut(s) 189
BisI GCNGC 2 cut(s) 84, 296
BlsI GCNGC 2 cut(s) 85, 297
Bme1390I CCNGG 4 cut(s) 47, 71, 112, 275
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 4 cut(s) 116, 117, 142, 332
BmrFI CCNGG 4 cut(s) 47, 71, 112, 275
BpiI GAAGAC 1 cut(s) 261
Bpu14I TTCGAA 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 111, 273
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 274, 280, 326
Bse1I ACTGG 1 cut(s) 21
BseBI CCWGG 3 cut(s) 47, 71, 112
BseDI CCNNGG 2 cut(s) 111, 273
BseGI GGATG 2 cut(s) 61, 97
BseLI CCNNNNNNNGG 4 cut(s) 52, 274, 280, 326
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 2 cut(s) 47, 77
BseXI GCAGC 2 cut(s) 95, 282
Bsh1236I CGCG 1 cut(s) 13
BshFI GGCC 2 cut(s) 110, 319
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 2 cut(s) 128, 256
BslI CCNNNNNNNGG 4 cut(s) 52, 274, 280, 326
BsmFI GGGAC 2 cut(s) 128, 256
BsnI GGCC 2 cut(s) 110, 319
Bsp119I TTCGAA 1 cut(s) 240
Bsp143I GATC 1 cut(s) 66
Bsp68I TCGCGA 1 cut(s) 13
BspANI GGCC 2 cut(s) 110, 319
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 1 cut(s) 13
BspLI GGNNCC 4 cut(s) 116, 117, 142, 332
BspPI GGATC 1 cut(s) 61
BspT104I TTCGAA 1 cut(s) 240
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 111, 273
BssMI GATC 1 cut(s) 66
Bst2UI CCWGG 3 cut(s) 47, 71, 112
Bst6I CTCTTC 2 cut(s) 45, 54
BstBI TTCGAA 1 cut(s) 240
BstDEI CTNAG 2 cut(s) 123, 181
BstF5I GGATG 2 cut(s) 61, 97
BstFNI CGCG 1 cut(s) 13
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 83, 173
BstNI CCWGG 3 cut(s) 47, 71, 112
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 4 cut(s) 45, 69, 110, 273
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 2 cut(s) 95, 282
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 110, 319
BtsCI GGATG 2 cut(s) 61, 97
BtsIMutI CAGTG 2 cut(s) 120, 144
BtuMI TCGCGA 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 115
CviAII CATG 1 cut(s) 259
CviJI RGCY 8 cut(s) 110, 136, 154, 167, 187, 205, 295, 319
CviKI_1 RGCY 8 cut(s) 110, 136, 154, 167, 187, 205, 295, 319
DdeI CTNAG 2 cut(s) 123, 181
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eam1104I CTCTTC 2 cut(s) 45, 54
EarI CTCTTC 2 cut(s) 45, 54
Eco147I AGGCCT 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 115
EcoRII CCWGG 3 cut(s) 45, 69, 110
FaeI CATG 1 cut(s) 262
FaiI YATR 6 cut(s) 98, 158, 201, 252, 260, 286
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 2 cut(s) 128, 256
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 84, 296
FokI GGATG 2 cut(s) 68, 104
Fsp4HI GCNGC 2 cut(s) 84, 296
FspBI CTAG 1 cut(s) 189
GluI GCNGC 2 cut(s) 84, 296
HaeIII GGCC 2 cut(s) 110, 319
HapII CCGG 1 cut(s) 275
Hin1II CATG 1 cut(s) 262
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 134
HpaII CCGG 1 cut(s) 275
Hpy166II GTNNAC 2 cut(s) 28, 325
Hpy188I TCNGA 2 cut(s) 43, 105
Hpy188III TCNNGA 2 cut(s) 12, 308
Hpy8I GTNNAC 2 cut(s) 28, 325
HpyAV CCTTC 2 cut(s) 100, 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 173
HpyF3I CTNAG 2 cut(s) 123, 181
Hsp92II CATG 1 cut(s) 262
KflI GGGWCCC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 66
Lsp1109I GCAGC 2 cut(s) 95, 282
MaeI CTAG 1 cut(s) 189
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 4 cut(s) 62, 71, 254, 266
MflI RGATCY 1 cut(s) 66
MluCI AATT 1 cut(s) 21
MnlI CCTC 5 cut(s) 25, 46, 55, 111, 309
MseI TTAA 2 cut(s) 132, 218
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 4 cut(s) 47, 71, 112, 275
MvaI CCWGG 3 cut(s) 47, 71, 112
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 83, 173
NciI CCSGG 1 cut(s) 275
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 4 cut(s) 116, 117, 142, 332
NruI TCGCGA 1 cut(s) 13
NspI RCATGY 1 cut(s) 262
NspV TTCGAA 1 cut(s) 240
PceI AGGCCT 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PkrI GCNGC 2 cut(s) 85, 297
PpuMI RGGWCCY 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 115
Psp6I CCWGG 3 cut(s) 45, 69, 110
PspGI CCWGG 3 cut(s) 45, 69, 110
PspN4I GGNNCC 4 cut(s) 116, 117, 142, 332
PspPI GGNCC 1 cut(s) 115
PspPPI RGGWCCY 1 cut(s) 115
PsuI RGATCY 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 295
RruI TCGCGA 1 cut(s) 13
SaqAI TTAA 2 cut(s) 132, 218
SatI GCNGC 2 cut(s) 84, 296
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 115
ScrFI CCNGG 4 cut(s) 47, 71, 112, 275
SetI ASST 6 cut(s) 75, 103, 132, 138, 270, 297
SfuI TTCGAA 1 cut(s) 240
SinI GGWCC 1 cut(s) 115
Sse9I AATT 1 cut(s) 21
SseBI AGGCCT 1 cut(s) 319
SspMI CTAG 1 cut(s) 189
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 4 cut(s) 45, 69, 110, 273
TaqI TCGA 3 cut(s) 210, 240, 264
TasI AATT 1 cut(s) 21
Tru1I TTAA 2 cut(s) 132, 218
Tru9I TTAA 2 cut(s) 132, 218
TscAI CASTG 2 cut(s) 127, 151
TseI GCWGC 2 cut(s) 83, 295
TspDTI ATGAA 2 cut(s) 72, 267
TspRI CASTG 2 cut(s) 127, 151
VpaK11BI GGWCC 1 cut(s) 115
VspI ATTAAT 1 cut(s) 218
XceI RCATGY 1 cut(s) 262
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.