Rroxscaffold_180G00433410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000180
OG0000176
Physical Location & Seq
Reverse (-)
351885 .. 352868
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_180G00433410.1

Sequence Viewer

Length: 621 bp
ATGATCCCAAGAGGACGGATCATTGATCGCATACGTCGTGGGGAAGTTCGGCCGAAGAAGTGGAAGCAAACCTTCCAACGAAAGTGGCGAAGGGAAGTCGAGCTCGAGGATGTTACATGCAATATGGTGTACGTACTATCGGTGAAATACGCACTACCGGTAGCATCCCAAGAGTGTCGAGACCATACAAGCGAAGCGATGGAAACGCAATCCGGCAAAATAACCACGGCGGCTACGGCATTCCCGAAGTTGGTTTCGTCAAGAAAACTTGAGGGAATAAACATGGAGGAAGCGCGAGCGAAAACCAGGATATGGGTTTCAGCAAACCAACGGGTTGCGGACAAGGCGACAATAGTCAAAGCGGATCCCCGAGCCTTTCTCGGTCTCCGCGGTATTTATGGACGCAAGGTAATATTTAGAACCTATCACTCGCTACAAGTACGCGGAATTGACAACAATGGCCGCCCCACGGGGGTGACGGCCTACGAACCGGCACAATGGGGGCTTGCGGTTGCAAAAGGCGATTCCGAAAGACCCGGACATGCGGTGCCAACTGCAGTCCAAATTGATGGATCAAAACCTCTCGGAGGAAGAGGCACGAGCATTTCGTTCTTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.05

Weight (kDa)

10.3

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 547
AccB7I CCANNNNNTGG 1 cut(s) 312
AccII CGCG 3 cut(s) 295, 390, 444
AciI CCGC 9 cut(s) 230, 338, 362, 388, 390, 444, 463, 509, 545
AclWI GGATC 4 cut(s) 26, 359, 372, 580
AcoI YGGCCR 2 cut(s) 50, 460
AfaI GTAC 3 cut(s) 131, 135, 441
AfiI CCNNNNNNNGG 5 cut(s) 250, 312, 469, 472, 587
AgeI ACCGGT 1 cut(s) 157
AjnI CCWGG 1 cut(s) 305
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 2 cut(s) 174, 389
AlwI GGATC 4 cut(s) 26, 359, 372, 580
Ama87I CYCGRG 2 cut(s) 104, 369
AoxI GGCC 3 cut(s) 50, 460, 480
AsiGI ACCGGT 1 cut(s) 157
AspLEI GCGC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 2 cut(s) 154, 487
AvaI CYCGRG 2 cut(s) 104, 369
BamHI GGATCC 1 cut(s) 364
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 105
BauI CACGAG 1 cut(s) 598
Bbv12I GWGCWC 1 cut(s) 105
BccI CCATC 2 cut(s) 193, 563
BceAI ACGGC 3 cut(s) 243, 252, 495
BciT130I CCWGG 1 cut(s) 307
BcnI CCSGG 1 cut(s) 537
BcoDI GTCTC 2 cut(s) 174, 389
BfmI CTRYAG 1 cut(s) 555
BisI GCNGC 2 cut(s) 231, 463
BlsI GCNGC 2 cut(s) 232, 464
Bme1390I CCNGG 2 cut(s) 307, 537
BmeT110I CYCGRG 2 cut(s) 104, 369
BmiI GGNNCC 2 cut(s) 366, 549
BmrFI CCNGG 2 cut(s) 307, 537
BmsI GCATC 1 cut(s) 173
BoxI GACNNNNGTC 1 cut(s) 353
BplI GAGNNNNNCTC 2 cut(s) 363, 395
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 537
BsaAI YACGTR 1 cut(s) 133
BsaI GGTCTC 2 cut(s) 174, 389
BsaJI CCNNGG 3 cut(s) 225, 388, 468
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 5 cut(s) 250, 312, 469, 472, 587
Bse118I RCCGGY 2 cut(s) 157, 490
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 3 cut(s) 225, 388, 468
BseGI GGATG 2 cut(s) 115, 164
BseLI CCNNNNNNNGG 5 cut(s) 250, 312, 469, 472, 587
BseX3I CGGCCG 1 cut(s) 50
Bsh1236I CGCG 3 cut(s) 295, 390, 444
Bsh1285I CGRYCG 1 cut(s) 53
BshFI GGCC 3 cut(s) 52, 462, 482
BshNI GGYRCC 1 cut(s) 547
BshTI ACCGGT 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 2 cut(s) 104, 369
BsiSI CCGG 4 cut(s) 158, 213, 491, 537
BslI CCNNNNNNNGG 5 cut(s) 250, 312, 469, 472, 587
BsmAI GTCTC 2 cut(s) 174, 389
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 3 cut(s) 52, 462, 482
Bso31I GGTCTC 2 cut(s) 174, 389
BsoBI CYCGRG 2 cut(s) 104, 369
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 5 cut(s) 3, 18, 25, 364, 572
BspACI CCGC 9 cut(s) 230, 338, 362, 388, 390, 444, 463, 509, 545
BspANI GGCC 3 cut(s) 52, 462, 482
BspFNI CGCG 3 cut(s) 295, 390, 444
BspLI GGNNCC 2 cut(s) 366, 549
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 4 cut(s) 26, 359, 372, 580
BspT107I GGYRCC 1 cut(s) 547
BspTNI GGTCTC 2 cut(s) 174, 389
BsrFI RCCGGY 2 cut(s) 157, 490
BssAI RCCGGY 2 cut(s) 157, 490
BssECI CCNNGG 3 cut(s) 225, 388, 468
BssMI GATC 5 cut(s) 3, 18, 25, 364, 572
BssSI CACGAG 1 cut(s) 598
Bst2BI CACGAG 1 cut(s) 598
Bst2UI CCWGG 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 586
BstBAI YACGTR 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 297, 507
BstDSI CCRYGG 3 cut(s) 225, 388, 468
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 2 cut(s) 115, 164
BstFNI CGCG 3 cut(s) 295, 390, 444
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 5 cut(s) 6, 21, 28, 367, 575
BstMAI GTCTC 2 cut(s) 174, 389
BstMBI GATC 5 cut(s) 3, 18, 25, 364, 572
BstMCI CGRYCG 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 236, 344
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 2 cut(s) 120, 545
BstPAI GACNNNNGTC 1 cut(s) 353
BstSCI CCNGG 2 cut(s) 305, 535
BstSFI CTRYAG 1 cut(s) 555
BstSNI TACGTA 1 cut(s) 133
BstUI CGCG 3 cut(s) 295, 390, 444
BstX2I RGATCY 1 cut(s) 364
BstXI CCANNNNNNTGG 1 cut(s) 569
BstYI RGATCY 1 cut(s) 364
BstZI CGGCCG 1 cut(s) 50
BsuRI GGCC 3 cut(s) 52, 462, 482
BtgI CCRYGG 3 cut(s) 225, 388, 468
BtgZI GCGATG 1 cut(s) 212
BtsCI GGATG 2 cut(s) 115, 164
Cac8I GCNNGC 2 cut(s) 297, 507
CfoI GCGC 1 cut(s) 295
Cfr10I RCCGGY 2 cut(s) 157, 490
Cfr42I CCGCGG 1 cut(s) 391
CseI GACGC 1 cut(s) 411
Csp6I GTAC 3 cut(s) 130, 134, 440
CspAI ACCGGT 1 cut(s) 157
CspCI CAANNNNNGTGG 2 cut(s) 65, 100
CviAII CATG 3 cut(s) 117, 283, 542
CviJI RGCY 7 cut(s) 52, 103, 233, 374, 462, 482, 505
CviKI_1 RGCY 7 cut(s) 52, 103, 233, 374, 462, 482, 505
CviQI GTAC 3 cut(s) 130, 134, 440
DpnI GATC 5 cut(s) 5, 20, 27, 366, 574
DpnII GATC 5 cut(s) 3, 18, 25, 364, 572
EaeI YGGCCR 2 cut(s) 50, 460
EagI CGGCCG 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 586
EarI CTCTTC 1 cut(s) 586
Ecl136II GAGCTC 1 cut(s) 103
EclXI CGGCCG 1 cut(s) 50
Eco105I TACGTA 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 2 cut(s) 174, 389
Eco52I CGGCCG 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 103
Eco88I CYCGRG 2 cut(s) 104, 369
EcoICRI GAGCTC 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 3 cut(s) 120, 286, 545
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FatI CATG 3 cut(s) 116, 282, 541
Fnu4HI GCNGC 2 cut(s) 231, 463
FokI GGATG 2 cut(s) 122, 151
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 2 cut(s) 231, 463
GlaI GCGC 1 cut(s) 294
GluI GCNGC 2 cut(s) 231, 463
HaeIII GGCC 3 cut(s) 52, 462, 482
HapII CCGG 4 cut(s) 158, 213, 491, 537
HgaI GACGC 1 cut(s) 411
HhaI GCGC 1 cut(s) 295
Hin1II CATG 3 cut(s) 120, 286, 545
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HinfI GANTC 1 cut(s) 524
HpaII CCGG 4 cut(s) 158, 213, 491, 537
HphI GGTGA 2 cut(s) 154, 487
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 529, 587
Hpy188III TCNNGA 3 cut(s) 179, 244, 261
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 82, 84
HpyCH4IV ACGT 2 cut(s) 34, 132
HpyCH4V TGCA 3 cut(s) 120, 515, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 344
HpySE526I ACGT 2 cut(s) 34, 132
Hsp92II CATG 3 cut(s) 120, 286, 545
HspAI GCGC 1 cut(s) 293
KspI CCGCGG 1 cut(s) 391
Kzo9I GATC 5 cut(s) 3, 18, 25, 364, 572
LpnPI CCDG 6 cut(s) 171, 226, 292, 319, 504, 550
LweI GCATC 1 cut(s) 173
MaeII ACGT 2 cut(s) 34, 132
MaeIII GTNAC 2 cut(s) 112, 475
MalI GATC 5 cut(s) 5, 20, 27, 366, 574
MboI GATC 5 cut(s) 3, 18, 25, 364, 572
MboII GAAGA 2 cut(s) 67, 603
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 447, 564
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 7 cut(s) 5, 100, 265, 280, 581, 587, 591
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 390
MspI CCGG 4 cut(s) 158, 213, 491, 537
MspR9I CCNGG 2 cut(s) 307, 537
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 3 cut(s) 295, 390, 444
MwoI GCNNNNNNNGC 2 cut(s) 236, 344
NciI CCSGG 1 cut(s) 537
NdeII GATC 5 cut(s) 3, 18, 25, 364, 572
NlaIII CATG 3 cut(s) 120, 286, 545
NlaIV GGNNCC 2 cut(s) 366, 549
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 2 cut(s) 120, 545
OliI CACNNNNGTG 1 cut(s) 473
PaeR7I CTCGAG 1 cut(s) 104
PcsI WCGNNNNNNNCGW 4 cut(s) 34, 85, 242, 605
PctI GAATGC 1 cut(s) 239
PfeI GAWTC 1 cut(s) 524
PflMI CCANNNNNTGG 1 cut(s) 312
PinAI ACCGGT 1 cut(s) 157
PkrI GCNGC 2 cut(s) 232, 464
Ppu21I YACGTR 1 cut(s) 133
PshAI GACNNNNGTC 1 cut(s) 353
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 366, 549
PspXI VCTCGAGB 1 cut(s) 104
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 3 cut(s) 131, 135, 441
RsaNI GTAC 3 cut(s) 130, 134, 440
RseI CAYNNNNRTG 1 cut(s) 473
SacI GAGCTC 1 cut(s) 105
SacII CCGCGG 1 cut(s) 391
SatI GCNGC 2 cut(s) 231, 463
Sau3AI GATC 5 cut(s) 3, 18, 25, 364, 572
ScrFI CCNGG 2 cut(s) 307, 537
SduI GDGCHC 1 cut(s) 105
SetI ASST 7 cut(s) 37, 74, 105, 135, 411, 425, 583
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 555
Sfr274I CTCGAG 1 cut(s) 104
Sfr303I CCGCGG 1 cut(s) 391
SgrBI CCGCGG 1 cut(s) 391
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 2 cut(s) 104, 269
SmoI CTYRAG 2 cut(s) 104, 269
SnaBI TACGTA 1 cut(s) 133
Sse9I AATT 2 cut(s) 447, 564
SsiI CCGC 9 cut(s) 230, 338, 362, 388, 390, 444, 463, 509, 545
SspI AATATT 1 cut(s) 414
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 305, 535
TaiI ACGT 2 cut(s) 37, 135
TaqI TCGA 3 cut(s) 99, 105, 178
TaqII GACCGA 1 cut(s) 371
TasI AATT 2 cut(s) 447, 564
TauI GCSGC 2 cut(s) 233, 465
TfiI GAWTC 1 cut(s) 524
TseFI GTSAC 1 cut(s) 475
Tsp45I GTSAC 1 cut(s) 475
TspGWI ACGGA 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 312
XagI CCTNNNNNAGG 1 cut(s) 585
XceI RCATGY 2 cut(s) 120, 545
XhoI CTCGAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.