Rroxscaffold_7G00163490

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000176
Physical Location & Seq
Reverse (-)
5724864 .. 5725715
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163490.1

Sequence Viewer

Length: 567 bp
ATGCGTTCTTCGTTACGGATTGTTACGCGGCCTACGGTGCCATCCGGGGAGAGATTGGATTCATCGAAGCTATTGTGTTCCGTCAACACTCCACCAAGAGCCGATTATGTGGAACGGGGTGACGATAAGGCCGAGATAATTAAAGCGGACCCTCGCCCTTTCTCTCGTTTCGCCGAATTACGTAGATGCCGTAGTTCTCGACCAAGAAGAGGAGGAAGAAGAGATTCGTATTGCTCCACGCATTGGATGACACACCTCCGAAGGTTAGGGACCCTACCGAGAAAGTCAATGGGAACAACCGACGAGCCTATAGAAGTGGCTATCGGCGCTTACTTAGAGCCTAGCGAGAAACAAAGGCTCATCGACTTATTATTAGAATTCAAGGATCGCTTCGCGGAAAAATACGAAGACATGCCGTGCCTATCACCGGACTTGGTATGCCACCAACTACCAACGCCGCCCGATAAGAGGCTCCGTGAAGCAAGAGCGCGAAGAATGAACTCGGAAACCCAAGTTCGGTCAAAGAGGAAGTCGAAAAGATGCACAAGTCGGGCATTATCGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

188

Amino Acids

21.83

Weight (kDa)

10.17

Isoelectric Point (pI)

69.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AccB7I CCANNNNNTGG 1 cut(s) 243
AccII CGCG 3 cut(s) 28, 395, 490
AciI CCGC 4 cut(s) 28, 146, 395, 458
AclWI GGATC 1 cut(s) 393
AcsI RAATTY 1 cut(s) 377
AfiI CCNNNNNNNGG 5 cut(s) 209, 243, 427, 468, 516
AgsI TTSAA 1 cut(s) 382
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
AlwI GGATC 1 cut(s) 393
AoxI GGCC 2 cut(s) 29, 129
ApoI RAATTY 1 cut(s) 377
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
Asp700I GAANNNNTTC 1 cut(s) 223
AspLEI GCGC 2 cut(s) 329, 490
AspS9I GGNCC 2 cut(s) 148, 270
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 131, 417
AvaII GGWCC 2 cut(s) 148, 270
BanI GGYRCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 414
BccI CCATC 1 cut(s) 49
BceAI ACGGC 2 cut(s) 174, 400
BcnI CCSGG 1 cut(s) 46
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 330
BisI GCNGC 2 cut(s) 29, 458
BlsI GCNGC 2 cut(s) 30, 459
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 2 cut(s) 148, 270
BmgT120I GGNCC 2 cut(s) 148, 270
BmiI GGNNCC 5 cut(s) 39, 150, 271, 272, 473
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 2 cut(s) 176, 530
BpiI GAAGAC 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 46
BsaAI YACGTR 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 5 cut(s) 209, 243, 427, 468, 516
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 41, 252
BseLI CCNNNNNNNGG 5 cut(s) 209, 243, 427, 468, 516
BseRI GAGGAG 1 cut(s) 225
Bsh1236I CGCG 3 cut(s) 28, 395, 490
BshFI GGCC 2 cut(s) 31, 131
BshNI GGYRCC 1 cut(s) 37
BsiSI CCGG 2 cut(s) 45, 428
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 5 cut(s) 209, 243, 427, 468, 516
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 2 cut(s) 31, 131
Bsp143I GATC 1 cut(s) 385
BspACI CCGC 4 cut(s) 28, 146, 395, 458
BspANI GGCC 2 cut(s) 31, 131
BspFNI CGCG 3 cut(s) 28, 395, 490
BspLI GGNNCC 5 cut(s) 39, 150, 271, 272, 473
BspPI GGATC 1 cut(s) 393
BspT107I GGYRCC 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 385
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 2 cut(s) 202, 214
BstBAI YACGTR 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 334
BstF5I GGATG 2 cut(s) 41, 252
BstFNI CGCG 3 cut(s) 28, 395, 490
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 2 cut(s) 329, 490
BstKTI GATC 1 cut(s) 388
BstMBI GATC 1 cut(s) 385
BstMWI GCNNNNNNNGC 2 cut(s) 37, 326
BstNSI RCATGY 1 cut(s) 415
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 309
BstSNI TACGTA 1 cut(s) 182
BstUI CGCG 3 cut(s) 28, 395, 490
BstV2I GAAGAC 1 cut(s) 414
BsuRI GGCC 2 cut(s) 31, 131
BtsCI GGATG 2 cut(s) 41, 252
CfoI GCGC 2 cut(s) 329, 490
Cfr13I GGNCC 2 cut(s) 148, 270
CviAII CATG 1 cut(s) 412
CviJI RGCY 9 cut(s) 31, 70, 101, 131, 307, 320, 340, 358, 472
CviKI_1 RGCY 9 cut(s) 31, 70, 101, 131, 307, 320, 340, 358, 472
DdeI CTNAG 1 cut(s) 334
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
Eam1104I CTCTTC 2 cut(s) 202, 214
EarI CTCTTC 2 cut(s) 202, 214
Eco105I TACGTA 1 cut(s) 182
Eco47I GGWCC 2 cut(s) 148, 270
EcoO109I RGGNCCY 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 377
FaeI CATG 1 cut(s) 415
FaiI YATR 4 cut(s) 108, 311, 413, 439
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 1 cut(s) 283
FatI CATG 1 cut(s) 411
Fnu4HI GCNGC 2 cut(s) 29, 458
FokI GGATG 2 cut(s) 28, 259
Fsp4HI GCNGC 2 cut(s) 29, 458
FspBI CTAG 1 cut(s) 342
GlaI GCGC 2 cut(s) 328, 489
GluI GCNGC 2 cut(s) 29, 458
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 2 cut(s) 31, 131
HapII CCGG 2 cut(s) 45, 428
HhaI GCGC 2 cut(s) 329, 490
Hin1II CATG 1 cut(s) 415
Hin6I GCGC 2 cut(s) 327, 488
HinP1I GCGC 2 cut(s) 327, 488
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 2 cut(s) 59, 224
HpaII CCGG 2 cut(s) 45, 428
HphI GGTGA 2 cut(s) 131, 417
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 260, 505
Hpy188III TCNNGA 1 cut(s) 198
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 543
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 326
HpyF3I CTNAG 1 cut(s) 334
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 1 cut(s) 415
HspAI GCGC 2 cut(s) 327, 488
KflI GGGWCCC 1 cut(s) 270
Kzo9I GATC 1 cut(s) 385
LmnI GCTCC 2 cut(s) 239, 477
LpnPI CCDG 2 cut(s) 58, 441
LweI GCATC 2 cut(s) 176, 530
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 3 cut(s) 12, 22, 119
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MboII GAAGA 5 cut(s) 219, 228, 231, 419, 504
MluCI AATT 3 cut(s) 138, 176, 377
MnlI CCTC 6 cut(s) 162, 203, 206, 266, 462, 519
MroXI GAANNNNTTC 1 cut(s) 223
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 559
MspI CCGG 2 cut(s) 45, 428
MspR9I CCNGG 1 cut(s) 46
MvnI CGCG 3 cut(s) 28, 395, 490
MwoI GCNNNNNNNGC 2 cut(s) 37, 326
NciI CCSGG 1 cut(s) 46
NdeII GATC 1 cut(s) 385
NlaIII CATG 1 cut(s) 415
NlaIV GGNNCC 5 cut(s) 39, 150, 271, 272, 473
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 119
NspI RCATGY 1 cut(s) 415
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 187
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 59, 224
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 2 cut(s) 30, 459
Ppu21I YACGTR 1 cut(s) 182
PpuMI RGGWCCY 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 270
PspN4I GGNNCC 5 cut(s) 39, 150, 271, 272, 473
PspPI GGNCC 2 cut(s) 148, 270
PspPPI RGGWCCY 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 559
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 29, 458
Sau3AI GATC 1 cut(s) 385
Sau96I GGNCC 2 cut(s) 148, 270
ScrFI CCNGG 1 cut(s) 46
SetI ASST 4 cut(s) 72, 184, 258, 266
SfaNI GCATC 2 cut(s) 176, 530
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 2 cut(s) 148, 270
SmiMI CAYNNNNRTG 1 cut(s) 559
SnaBI TACGTA 1 cut(s) 182
Sse9I AATT 3 cut(s) 138, 176, 377
SsiI CCGC 4 cut(s) 28, 146, 395, 458
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 184
TaqI TCGA 4 cut(s) 65, 199, 363, 533
TaqII GACCGA 1 cut(s) 507
TasI AATT 3 cut(s) 138, 176, 377
TauI GCSGC 2 cut(s) 31, 460
TfiI GAWTC 2 cut(s) 59, 224
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 51, 512
TspGWI ACGGA 3 cut(s) 31, 70, 464
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 2 cut(s) 148, 270
XapI RAATTY 1 cut(s) 377
XceI RCATGY 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.