RchiOBHm_Chr2g0121061

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000176
Physical Location & Seq
Forward (+)
33932714 .. 33933313
600 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49362

Sequence Viewer

Length: 600 bp
ATGGCTCAGCATTTGAAGCCGTTATACATCACGGCTTACATAGAGGGATATCCAATAACGAAAGTTTTGGTGGACAATGGTGCAGCAGTTAATGTGTTACCTACAGCCGTTATGAAGAAATTACGCAGAACTAAATCCGATTTGCTACCTTCTGACATCACAGTGAGCAATTTCTCTGGCGGGAAGAGCAGGCCAAGAGGTATCCTCCCACTCGATGTCACAGTGGGGGAAAAGACAAACATGACAGCTTTCTTCGTGGTCGATTCATCTGCTCATTACAATGCATTGCTTGGCCGCGATTGGATTCACCAGAATTTATGTGTACCTTCTTCCCTGCATCAAGTTTTGATCTTCTGGCATGGAGACAAAATTGAGGTCATTCCAGCAGACAATAATCCATTTCAAGCATCCAACAATGTAGTAGAAGCAAGGTTTTATGAGGACGATATTGGTTATTTCACTTTCAGTGGACGAGATAGCAAGGGCCGACCTACCCAAGTTACGGCCCAGAAAATTGTCAACCTAGGGAGTGAGGATGTTTTGCAAGATGCAGAACGTCCAACCCTGGTTGACCTCTTCAAGGACAATATCAATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

199

Amino Acids

22.1

Weight (kDa)

6.19

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
gag-asp_proteas PF13975 11 - 103 9.6e-06 gag-polyprotein putative aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 297
AciI CCGC 2 cut(s) 180, 295
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 1 cut(s) 313
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 2 cut(s) 502, 580
AgsI TTSAA 3 cut(s) 16, 404, 580
AjnI CCWGG 1 cut(s) 564
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw26I GTCTC 1 cut(s) 357
AoxI GGCC 4 cut(s) 191, 292, 484, 504
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 313
ArsI GACNNNNNNTTYG 2 cut(s) 360, 392
AspA2I CCTAGG 1 cut(s) 523
AspS9I GGNCC 2 cut(s) 484, 505
AsuHPI GGTGA 1 cut(s) 299
AvrII CCTAGG 1 cut(s) 523
BarI GAAGNNNNNNTAC 2 cut(s) 8, 40
BbvI GCAGC 1 cut(s) 95
BceAI ACGGC 4 cut(s) 4, 48, 92, 519
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 1 cut(s) 566
BciVI GTATCC 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 357
BfaI CTAG 2 cut(s) 524, 598
BfmI CTRYAG 1 cut(s) 102
BfuI GTATCC 1 cut(s) 212
BisI GCNGC 2 cut(s) 84, 295
BlnI CCTAGG 1 cut(s) 523
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 2 cut(s) 85, 296
Bme1390I CCNGG 1 cut(s) 566
BmgT120I GGNCC 2 cut(s) 484, 505
BmrFI CCNGG 1 cut(s) 566
BmsI GCATC 3 cut(s) 346, 416, 538
BplI GAGNNNNNCTC 2 cut(s) 189, 221
Bpu1102I GCTNAGC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 523, 564
Bsc4I CCNNNNNNNGG 2 cut(s) 502, 580
Bse3DI GCAATG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 2 cut(s) 523, 564
BseGI GGATG 2 cut(s) 407, 541
BseLI CCNNNNNNNGG 2 cut(s) 502, 580
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 4 cut(s) 193, 294, 486, 506
BslI CCNNNNNNNGG 2 cut(s) 502, 580
BsmAI GTCTC 1 cut(s) 357
BsnI GGCC 4 cut(s) 193, 294, 486, 506
Bsp143I GATC 1 cut(s) 348
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 2 cut(s) 180, 295
BspANI GGCC 4 cut(s) 193, 294, 486, 506
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 297
BspQI GCTCTTC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 523, 564
BssMI GATC 1 cut(s) 348
BssT1I CCWWGG 1 cut(s) 523
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 2 cut(s) 163, 223
Bst6I CTCTTC 2 cut(s) 179, 581
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 578
BstF5I GGATG 2 cut(s) 407, 541
BstFNI CGCG 1 cut(s) 297
BstKTI GATC 1 cut(s) 351
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 1 cut(s) 348
BstMWI GCNNNNNNNGC 2 cut(s) 16, 186
BstNI CCWGG 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 564
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 95
BsuI GTATCC 1 cut(s) 212
BsuRI GGCC 4 cut(s) 193, 294, 486, 506
BtsCI GGATG 2 cut(s) 407, 541
BtsIMutI CAGTG 3 cut(s) 168, 228, 472
Cac8I GCNNGC 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 484, 505
Csp6I GTAC 1 cut(s) 323
CviAII CATG 2 cut(s) 241, 359
CviJI RGCY 9 cut(s) 5, 19, 35, 107, 193, 248, 294, 486, 506
CviKI_1 RGCY 9 cut(s) 5, 19, 35, 107, 193, 248, 294, 486, 506
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
EaeI YGGCCR 1 cut(s) 292
Eam1104I CTCTTC 2 cut(s) 179, 581
EarI CTCTTC 2 cut(s) 179, 581
Eco130I CCWWGG 1 cut(s) 523
Eco32I GATATC 1 cut(s) 50
EcoNI CCTNNNNNAGG 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 564
EcoRV GATATC 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 523
EcoT22I ATGCAT 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 2 cut(s) 244, 362
FaiI YATR 7 cut(s) 25, 41, 113, 242, 319, 360, 438
FatI CATG 2 cut(s) 240, 358
FauI CCCGC 1 cut(s) 173
Fnu4HI GCNGC 2 cut(s) 84, 295
FokI GGATG 2 cut(s) 394, 548
Fsp4HI GCNGC 2 cut(s) 84, 295
FspBI CTAG 2 cut(s) 524, 598
GluI GCNGC 2 cut(s) 84, 295
HaeIII GGCC 4 cut(s) 193, 294, 486, 506
Hin1II CATG 2 cut(s) 244, 362
HincII GTYRAC 2 cut(s) 520, 571
HindII GTYRAC 2 cut(s) 520, 571
HinfI GANTC 2 cut(s) 263, 304
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 5 cut(s) 73, 323, 470, 520, 571
Hpy188I TCNGA 2 cut(s) 139, 154
Hpy8I GTNNAC 5 cut(s) 73, 323, 470, 520, 571
HpyAV CCTTC 2 cut(s) 159, 336
HpyCH4III ACNGT 2 cut(s) 163, 223
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 5 cut(s) 83, 284, 337, 544, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 186
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 2 cut(s) 244, 362
Kzo9I GATC 1 cut(s) 348
LguI GCTCTTC 1 cut(s) 179
LpnPI CCDG 9 cut(s) 162, 175, 323, 340, 347, 396, 521, 551, 578
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 3 cut(s) 346, 416, 538
MaeI CTAG 2 cut(s) 524, 598
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 3 cut(s) 96, 217, 499
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MboII GAAGA 6 cut(s) 127, 196, 244, 321, 343, 568
MluCI AATT 5 cut(s) 119, 169, 313, 369, 513
MmeI TCCRAC 2 cut(s) 435, 584
MnlI CCTC 7 cut(s) 37, 191, 215, 367, 433, 526, 584
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 2 cut(s) 161, 279
MspR9I CCNGG 1 cut(s) 566
MvaI CCWGG 1 cut(s) 566
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 2 cut(s) 16, 186
NdeII GATC 1 cut(s) 348
NlaIII CATG 2 cut(s) 244, 362
NmuCI GTSAC 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 263, 304
PkrI GCNGC 2 cut(s) 85, 296
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspPI GGNCC 2 cut(s) 484, 505
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 2 cut(s) 161, 279
SapI GCTCTTC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 84, 295
Sau3AI GATC 1 cut(s) 348
Sau96I GGNCC 2 cut(s) 484, 505
ScrFI CCNGG 1 cut(s) 566
SfaNI GCATC 3 cut(s) 346, 416, 538
SfcI CTRYAG 1 cut(s) 102
SmiMI CAYNNNNRTG 2 cut(s) 161, 279
Sse9I AATT 5 cut(s) 119, 169, 313, 369, 513
SsiI CCGC 2 cut(s) 180, 295
SspMI CTAG 2 cut(s) 524, 598
StyD4I CCNGG 1 cut(s) 564
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 2 cut(s) 163, 223
TaiI ACGT 1 cut(s) 559
TaqI TCGA 2 cut(s) 213, 261
TasI AATT 5 cut(s) 119, 169, 313, 369, 513
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 2 cut(s) 263, 304
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 3 cut(s) 168, 228, 472
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 128, 255
TspRI CASTG 3 cut(s) 168, 228, 472
XagI CCTNNNNNAGG 1 cut(s) 578
XapI RAATTY 1 cut(s) 313
XmaJI CCTAGG 1 cut(s) 523
XspI CTAG 2 cut(s) 524, 598
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.