Rroxscaffold_1G00020730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000176
Physical Location & Seq
Reverse (-)
25217086 .. 25222425
5340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00020730.1

Sequence Viewer

Length: 627 bp
ATGGCGGAACAAAAGAAGGCCGTCGTGGTACATGAACAAAAGCCGGCCGAGATAATGATTCCCGCGGAACAGATTGTTGGGCTGCCTTGGTGGCTAAATAGTTCAACGCGAGAGATCCCGGTTGACGAACCTAAGCTCACCCTTATCGATGACATGGATGAGACGGAGGTGTTGGACACTACTTACGGGATGGTCCCGCATAGGGTGTTTATGCCTTCTTTGTGCATCGCTACGCGGCCTACATCTCCATCTTGGGCCGAGATTGGATTCACGGGAACTATTGTGTTCCGTCCACTCTTCACCAGGAACCGATTATATGGAACGAGGGTTGCGGATAAAGCAAAGGCGATTAAAGCGGATCCCCGACCGTTTCCTATCTCCGCAAACTATGTAGATTTTGGTCAATTAAGTCCGGGAGGTAGGGCACCAAAGAAGAGTAGGGGTCAAAAGGCGGTTTCCTACCCTTCTGCGGCATGCTCCGCACAAGGGAACCTTGAAAAGATGACTCCTCGAAGGTGGTATCTCATGTTAGGAGCCCATCGTGTTCTTCAACCTATCATAAGCATAGCATGTTCCATCCAGGCTTTCGAGGCCAAAGCCATGACGTTGCCCGAGATTAAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.11

Weight (kDa)

9.3

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 424
AccII CGCG 3 cut(s) 65, 109, 235
AclWI GGATC 3 cut(s) 109, 353, 366
AcoI YGGCCR 1 cut(s) 45
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 3 cut(s) 202, 469, 486
AgsI TTSAA 3 cut(s) 105, 497, 551
AjnI CCWGG 2 cut(s) 302, 579
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 3 cut(s) 109, 353, 366
Ama87I CYCGRG 1 cut(s) 611
AoxI GGCC 5 cut(s) 18, 45, 236, 255, 591
ApeKI GCWGC 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 193, 255
AsuC2I CCSGG 2 cut(s) 119, 414
AsuHPI GGTGA 2 cut(s) 130, 292
AvaI CYCGRG 1 cut(s) 611
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 427
BamHI GGATCC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 538
BbvI GCAGC 1 cut(s) 69
BccI CCATC 4 cut(s) 184, 256, 546, 584
BceAI ACGGC 1 cut(s) 5
BciT130I CCWGG 2 cut(s) 304, 581
BcnI CCSGG 2 cut(s) 119, 414
BcoDI GTCTC 1 cut(s) 155
BglI GCCNNNNNGGC 1 cut(s) 91
BisI GCNGC 3 cut(s) 83, 236, 471
BlsI GCNGC 3 cut(s) 84, 237, 472
Bme1390I CCNGG 4 cut(s) 119, 304, 414, 581
Bme18I GGWCC 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 611
BmgT120I GGNCC 2 cut(s) 193, 255
BmiI GGNNCC 6 cut(s) 195, 308, 360, 426, 491, 535
BmrFI CCNGG 4 cut(s) 119, 304, 414, 581
BmsI GCATC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 132
BpuMI CCSGG 2 cut(s) 119, 414
Bsa29I ATCGAT 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 63, 86
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 469, 486
Bse118I RCCGGY 1 cut(s) 43
BseBI CCWGG 2 cut(s) 304, 581
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 63, 86
BseGI GGATG 3 cut(s) 163, 195, 576
BseLI CCNNNNNNNGG 3 cut(s) 202, 469, 486
BseRI GAGGAG 1 cut(s) 498
BseSI GKGCMC 1 cut(s) 427
BseX3I CGGCCG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 69
Bsh1236I CGCG 3 cut(s) 65, 109, 235
Bsh1285I CGRYCG 2 cut(s) 48, 368
BshFI GGCC 5 cut(s) 20, 47, 238, 257, 593
BshNI GGYRCC 1 cut(s) 424
BshVI ATCGAT 1 cut(s) 147
BsiEI CGRYCG 2 cut(s) 48, 368
BsiHKCI CYCGRG 1 cut(s) 611
BsiSI CCGG 3 cut(s) 44, 119, 413
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 3 cut(s) 202, 469, 486
BsmAI GTCTC 1 cut(s) 155
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 5 cut(s) 20, 47, 238, 257, 593
BsoBI CYCGRG 1 cut(s) 611
Bsp1286I GDGCHC 2 cut(s) 427, 538
Bsp143I GATC 2 cut(s) 114, 358
BspANI GGCC 5 cut(s) 20, 47, 238, 257, 593
BspDI ATCGAT 1 cut(s) 147
BspFNI CGCG 3 cut(s) 65, 109, 235
BspLI GGNNCC 6 cut(s) 195, 308, 360, 426, 491, 535
BspPI GGATC 3 cut(s) 109, 353, 366
BspT107I GGYRCC 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 63, 86
BssMI GATC 2 cut(s) 114, 358
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 2 cut(s) 304, 581
Bst4CI ACNGT 1 cut(s) 369
Bst6I CTCTTC 2 cut(s) 302, 428
BstC8I GCNNGC 2 cut(s) 45, 475
BstDEI CTNAG 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 3 cut(s) 163, 195, 576
BstFNI CGCG 3 cut(s) 65, 109, 235
BstKTI GATC 2 cut(s) 117, 361
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 114, 358
BstMCI CGRYCG 2 cut(s) 48, 368
BstMWI GCNNNNNNNGC 5 cut(s) 91, 338, 353, 479, 590
BstNI CCWGG 2 cut(s) 304, 581
BstNSI RCATGY 2 cut(s) 477, 573
BstSCI CCNGG 4 cut(s) 117, 302, 412, 579
BstSLI GKGCMC 1 cut(s) 427
BstUI CGCG 3 cut(s) 65, 109, 235
BstV1I GCAGC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 114, 358
BstYI RGATCY 2 cut(s) 114, 358
BstZI CGGCCG 1 cut(s) 45
Bsu15I ATCGAT 1 cut(s) 147
BsuRI GGCC 5 cut(s) 20, 47, 238, 257, 593
BsuTUI ATCGAT 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 211
BtsCI GGATG 3 cut(s) 163, 195, 576
Cac8I GCNNGC 2 cut(s) 45, 475
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 193, 255
Cfr42I CCGCGG 1 cut(s) 66
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 1 cut(s) 29
CviAII CATG 6 cut(s) 32, 154, 474, 526, 570, 601
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 116, 360
DpnII GATC 2 cut(s) 114, 358
EaeI YGGCCR 1 cut(s) 45
EagI CGGCCG 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 302, 428
EarI CTCTTC 2 cut(s) 302, 428
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 538
Eco47I GGWCC 1 cut(s) 193
Eco52I CGGCCG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 611
EcoRII CCWGG 2 cut(s) 302, 579
EcoT14I CCWWGG 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 1 cut(s) 86
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 6 cut(s) 35, 157, 477, 529, 573, 604
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FaqI GGGAC 1 cut(s) 179
FatI CATG 6 cut(s) 31, 153, 473, 525, 569, 600
FauI CCCGC 2 cut(s) 70, 204
Fnu4HI GCNGC 3 cut(s) 83, 236, 471
FokI GGATG 3 cut(s) 170, 202, 563
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 3 cut(s) 83, 236, 471
GluI GCNGC 3 cut(s) 83, 236, 471
HaeIII GGCC 5 cut(s) 20, 47, 238, 257, 593
HapII CCGG 3 cut(s) 44, 119, 413
Hin1II CATG 6 cut(s) 35, 157, 477, 529, 573, 604
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 3 cut(s) 58, 267, 505
HpaII CCGG 3 cut(s) 44, 119, 413
HphI GGTGA 2 cut(s) 130, 292
Hpy166II GTNNAC 2 cut(s) 124, 293
Hpy8I GTNNAC 2 cut(s) 124, 293
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 4 cut(s) 10, 225, 474, 507
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4IV ACGT 1 cut(s) 605
HpyCH4V TGCA 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 338, 353, 479, 590
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 605
Hsp92II CATG 6 cut(s) 35, 157, 477, 529, 573, 604
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
KspI CCGCGG 1 cut(s) 66
Kzo9I GATC 2 cut(s) 114, 358
LmnI GCTCC 2 cut(s) 482, 533
LpnPI CCDG 7 cut(s) 57, 132, 289, 316, 426, 566, 593
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 234
MaeII ACGT 1 cut(s) 605
MalI GATC 2 cut(s) 116, 360
MboI GATC 2 cut(s) 114, 358
MboII GAAGA 3 cut(s) 289, 445, 539
MflI RGATCY 2 cut(s) 114, 358
MhlI GDGCHC 2 cut(s) 427, 538
MluCI AATT 1 cut(s) 404
MlyI GAGTC 1 cut(s) 499
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 5 cut(s) 160, 318, 410, 519, 583
MroNI GCCGGC 1 cut(s) 43
MseI TTAA 3 cut(s) 351, 407, 618
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 3 cut(s) 44, 119, 413
MspR9I CCNGG 4 cut(s) 119, 304, 414, 581
MvaI CCWGG 2 cut(s) 304, 581
MvnI CGCG 3 cut(s) 65, 109, 235
MwoI GCNNNNNNNGC 5 cut(s) 91, 338, 353, 479, 590
NaeI GCCGGC 1 cut(s) 45
NciI CCSGG 2 cut(s) 119, 414
NdeII GATC 2 cut(s) 114, 358
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 6 cut(s) 35, 157, 477, 529, 573, 604
NlaIV GGNNCC 6 cut(s) 195, 308, 360, 426, 491, 535
NmeAIII GCCGAG 2 cut(s) 73, 283
NspI RCATGY 2 cut(s) 477, 573
PaeI GCATGC 1 cut(s) 477
PdiI GCCGGC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 58, 267
PfoI TCCNGGA 1 cut(s) 412
PkrI GCNGC 3 cut(s) 84, 237, 472
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
Psp6I CCWGG 2 cut(s) 302, 579
PspGI CCWGG 2 cut(s) 302, 579
PspN4I GGNNCC 6 cut(s) 195, 308, 360, 426, 491, 535
PspPI GGNCC 2 cut(s) 193, 255
PsuI RGATCY 2 cut(s) 114, 358
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SacII CCGCGG 1 cut(s) 66
SaqAI TTAA 3 cut(s) 351, 407, 618
SatI GCNGC 3 cut(s) 83, 236, 471
Sau3AI GATC 2 cut(s) 114, 358
Sau96I GGNCC 2 cut(s) 193, 255
SchI GAGTC 1 cut(s) 499
ScrFI CCNGG 4 cut(s) 119, 304, 414, 581
SduI GDGCHC 2 cut(s) 427, 538
SetI ASST 8 cut(s) 133, 138, 171, 421, 495, 518, 556, 608
SfaNI GCATC 1 cut(s) 234
Sfr303I CCGCGG 1 cut(s) 66
SgrBI CCGCGG 1 cut(s) 66
SinI GGWCC 1 cut(s) 193
SphI GCATGC 1 cut(s) 477
Sse9I AATT 1 cut(s) 404
StyD4I CCNGG 4 cut(s) 117, 302, 412, 579
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 369
TaiI ACGT 1 cut(s) 608
TaqI TCGA 3 cut(s) 147, 511, 588
TasI AATT 1 cut(s) 404
TauI GCSGC 2 cut(s) 238, 473
TfiI GAWTC 2 cut(s) 58, 267
Tru1I TTAA 3 cut(s) 351, 407, 618
Tru9I TTAA 3 cut(s) 351, 407, 618
TseI GCWGC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 2 cut(s) 179, 278
VpaK11BI GGWCC 1 cut(s) 193
XceI RCATGY 2 cut(s) 477, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.