Rroxscaffold_4G00323390

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
54083264 .. 54084015
752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00323390.1

Sequence Viewer

Length: 513 bp
ATGGTCCAACACATGAGACCCCTATATATCACAGCGGAAGTCGGTGGTACTAAAGTTAGCAAGATCATGGTTGATACCGGAGTTGCCGTTAACGTCATCACTACCGGGGCCATGCAATCGCTTGGAATCAAGAAAGAGAAAATCCGGTCTACGTCCCTCACGCTCAAGAACTTCGCGGGGACCGTGACAAAGACCTTGGGATTGCTTTTCTTACTCATTAAGGTTGGTCCCAGAGGAGTTTATGCTTTCTTTGTGACGATCGTTATGCGGCTTATAGCGCTATTCTCGGGCAGACCGGATTCACGGAGTTACCGTGTTCCGTCAACTCTCCACCAGGAACCGGTTATATGGAACAGGGAGACAGATAAAGCCGAAGTGATTAAGGCGGACCCTCGCCCATTCCCGGTGTCCACGAATTATGTAGATGCCGTGGAAAAAGAGGCCTATGAGCAAGTCGCGACCTTAGAGGCCATCAATGAAGAACTCTCGATCAATAACAAGGGAATGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

18.84

Weight (kDa)

9.62

Isoelectric Point (pI)

18.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 149
AccII CGCG 2 cut(s) 176, 458
AciI CCGC 4 cut(s) 35, 176, 268, 386
AfaI GTAC 1 cut(s) 49
AfeI AGCGCT 1 cut(s) 279
AfiI CCNNNNNNNGG 2 cut(s) 340, 403
AgeI ACCGGT 1 cut(s) 340
AjnI CCWGG 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 10, 353
Ama87I CYCGRG 1 cut(s) 286
Aor51HI AGCGCT 1 cut(s) 279
AoxI GGCC 3 cut(s) 108, 441, 468
AsiGI ACCGGT 1 cut(s) 340
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 5 cut(s) 4, 108, 180, 227, 388
AsuC2I CCSGG 2 cut(s) 106, 404
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 4 cut(s) 4, 180, 227, 388
BaeI ACNNNNGTAYC 4 cut(s) 39, 66, 72, 99
BccI CCATC 1 cut(s) 479
BceAI ACGGC 2 cut(s) 71, 413
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 1 cut(s) 335
BcnI CCSGG 2 cut(s) 106, 404
BcoDI GTCTC 2 cut(s) 10, 353
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
Bme1390I CCNGG 3 cut(s) 106, 335, 404
Bme18I GGWCC 4 cut(s) 4, 180, 227, 388
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 5 cut(s) 4, 108, 180, 227, 388
BmiI GGNNCC 5 cut(s) 109, 181, 229, 339, 390
BmrFI CCNGG 3 cut(s) 106, 335, 404
BmsI GCATC 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 2 cut(s) 106, 404
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 3 cut(s) 105, 195, 429
BsaWI WCCGGW 4 cut(s) 77, 144, 295, 340
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 298, 328
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 403
Bse118I RCCGGY 1 cut(s) 340
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 3 cut(s) 105, 195, 429
BseLI CCNNNNNNNGG 2 cut(s) 340, 403
BseRI GAGGAG 1 cut(s) 249
Bsh1236I CGCG 2 cut(s) 176, 458
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 3 cut(s) 110, 443, 470
BshTI ACCGGT 1 cut(s) 340
BsiEI CGRYCG 1 cut(s) 261
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 6 cut(s) 78, 105, 145, 296, 341, 404
BslFI GGGAC 3 cut(s) 139, 193, 213
BslI CCNNNNNNNGG 2 cut(s) 340, 403
BsmAI GTCTC 2 cut(s) 10, 353
BsmFI GGGAC 3 cut(s) 139, 193, 213
BsnI GGCC 3 cut(s) 110, 443, 470
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 286
Bsp143I GATC 3 cut(s) 63, 258, 489
Bsp68I TCGCGA 1 cut(s) 458
BspACI CCGC 4 cut(s) 35, 176, 268, 386
BspANI GGCC 3 cut(s) 110, 443, 470
BspFNI CGCG 2 cut(s) 176, 458
BspLI GGNNCC 5 cut(s) 109, 181, 229, 339, 390
BspTNI GGTCTC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 340
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 3 cut(s) 105, 195, 429
BssMI GATC 3 cut(s) 63, 258, 489
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 2 cut(s) 184, 314
BstDEI CTNAG 1 cut(s) 463
BstDSI CCRYGG 1 cut(s) 429
BstFNI CGCG 2 cut(s) 176, 458
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 3 cut(s) 66, 261, 492
BstMAI GTCTC 2 cut(s) 10, 353
BstMBI GATC 3 cut(s) 63, 258, 489
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNI CCWGG 1 cut(s) 335
BstSCI CCNGG 3 cut(s) 104, 333, 402
BstUI CGCG 2 cut(s) 176, 458
BsuRI GGCC 3 cut(s) 110, 443, 470
BtgI CCRYGG 1 cut(s) 429
BtuMI TCGCGA 1 cut(s) 458
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 340
Cfr13I GGNCC 5 cut(s) 4, 108, 180, 227, 388
Csp6I GTAC 1 cut(s) 48
CspAI ACCGGT 1 cut(s) 340
CviAII CATG 3 cut(s) 13, 67, 112
CviJI RGCY 5 cut(s) 110, 271, 371, 443, 470
CviKI_1 RGCY 5 cut(s) 110, 271, 371, 443, 470
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 1 cut(s) 463
DpnI GATC 3 cut(s) 65, 260, 491
DpnII GATC 3 cut(s) 63, 258, 489
EciI GGCGGA 1 cut(s) 401
Eco130I CCWWGG 1 cut(s) 195
Eco147I AGGCCT 1 cut(s) 443
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 4 cut(s) 4, 180, 227, 388
Eco47III AGCGCT 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 3 cut(s) 16, 70, 115
FaqI GGGAC 3 cut(s) 139, 193, 213
FatI CATG 3 cut(s) 12, 66, 111
FauI CCCGC 1 cut(s) 169
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 269
GlaI GCGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 3 cut(s) 110, 443, 470
HapII CCGG 6 cut(s) 78, 105, 145, 296, 341, 404
HhaI GCGC 1 cut(s) 280
Hin1II CATG 3 cut(s) 16, 70, 115
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 2 cut(s) 91, 324
HindII GTYRAC 2 cut(s) 91, 324
HinfI GANTC 2 cut(s) 126, 299
HpaI GTTAAC 1 cut(s) 91
HpaII CCGG 6 cut(s) 78, 105, 145, 296, 341, 404
Hpy166II GTNNAC 4 cut(s) 91, 150, 324, 411
Hpy188III TCNNGA 4 cut(s) 130, 166, 457, 487
Hpy8I GTNNAC 4 cut(s) 91, 150, 324, 411
HpyCH4III ACNGT 2 cut(s) 184, 314
HpyCH4IV ACGT 2 cut(s) 93, 152
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 1 cut(s) 463
HpySE526I ACGT 2 cut(s) 93, 152
Hsp92II CATG 3 cut(s) 16, 70, 115
HspAI GCGC 1 cut(s) 278
KspAI GTTAAC 1 cut(s) 91
Kzo9I GATC 3 cut(s) 63, 258, 489
LweI GCATC 1 cut(s) 415
MaeII ACGT 2 cut(s) 93, 152
MaeIII GTNAC 3 cut(s) 184, 253, 308
MalI GATC 3 cut(s) 65, 260, 491
MboI GATC 3 cut(s) 63, 258, 489
MboII GAAGA 1 cut(s) 491
MluCI AATT 1 cut(s) 415
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 6 cut(s) 167, 227, 402, 433, 460, 501
MseI TTAA 3 cut(s) 90, 219, 381
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 6 cut(s) 78, 105, 145, 296, 341, 404
MspR9I CCNGG 3 cut(s) 106, 335, 404
MvaI CCWGG 1 cut(s) 335
MvnI CGCG 2 cut(s) 176, 458
MwoI GCNNNNNNNGC 1 cut(s) 277
NciI CCSGG 2 cut(s) 106, 404
NdeII GATC 3 cut(s) 63, 258, 489
NlaIII CATG 3 cut(s) 16, 70, 115
NlaIV GGNNCC 5 cut(s) 109, 181, 229, 339, 390
NmuCI GTSAC 2 cut(s) 184, 253
NruI TCGCGA 1 cut(s) 458
PceI AGGCCT 1 cut(s) 443
PcsI WCGNNNNNNNCGW 2 cut(s) 180, 310
PfeI GAWTC 2 cut(s) 126, 299
PinAI ACCGGT 1 cut(s) 340
PkrI GCNGC 1 cut(s) 270
Ple19I CGATCG 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 5 cut(s) 109, 181, 229, 339, 390
PspPI GGNCC 5 cut(s) 4, 108, 180, 227, 388
PvuI CGATCG 1 cut(s) 261
RruI TCGCGA 1 cut(s) 458
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SaqAI TTAA 3 cut(s) 90, 219, 381
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 3 cut(s) 63, 258, 489
Sau96I GGNCC 5 cut(s) 4, 108, 180, 227, 388
ScrFI CCNGG 3 cut(s) 106, 335, 404
SetI ASST 6 cut(s) 96, 155, 197, 225, 464, 512
SfaNI GCATC 1 cut(s) 415
SinI GGWCC 4 cut(s) 4, 180, 227, 388
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 1 cut(s) 415
SseBI AGGCCT 1 cut(s) 443
SsiI CCGC 4 cut(s) 35, 176, 268, 386
StuI AGGCCT 1 cut(s) 443
StyD4I CCNGG 3 cut(s) 104, 333, 402
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 184, 314
TaiI ACGT 2 cut(s) 96, 155
TaqI TCGA 1 cut(s) 488
TasI AATT 1 cut(s) 415
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 2 cut(s) 126, 299
Tru1I TTAA 3 cut(s) 90, 219, 381
Tru9I TTAA 3 cut(s) 90, 219, 381
TseFI GTSAC 2 cut(s) 184, 253
Tsp45I GTSAC 2 cut(s) 184, 253
TspDTI ATGAA 1 cut(s) 492
TspGWI ACGGA 2 cut(s) 309, 319
VpaK11BI GGWCC 4 cut(s) 4, 180, 227, 388
XmiI GTMKAC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.