Rroxscaffold_1G00010240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000176
Physical Location & Seq
Reverse (-)
12885656 .. 12889966
4311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00010240.1

Sequence Viewer

Length: 525 bp
ATGAATTACAACCTTCCGGAGGAAGAGGTAGAGGCCTTCCACTCTTTGTACGATAGGATATCCTCATACTTGGTAGAGAAAGAGGCCTACGATCGAGTCGCAACATTGGAGTTTGTTAATGAAGAATTCTCGACCATGAAGAGGAAGAAGAGGAAATCCAACTCGCACCGGCGGCACTTGATGACACTCCTCCAAAGGTTAGGGATCCTACGAGAAAATCAATGCGGCGCGACCACTAAGCCCATGGAAGTGGCTATTAGGGAAGGGACATATCCATCCCAACCCTTCCAATTGTCCATCCTTGGGCCAAAAGTAGACATCAAAGGTGAGCGCGGCCAAGTTGCCCCGTTTATCTCGGGGACAAAACGGAAGTTTGGTCCGCTATGTCCGGAGGTAGGGCGTCAAAGAAGAGTAGGGGTTAGAAGGCGGCTTCCTACCCTTCCTCGGTTTGCTCGTGCATGGGAACCTCGAGAAGATGACTCCTCGAGTGTGGTATCCCATGCTAGGAGCCCATCGCGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

20.06

Weight (kDa)

10.05

Isoelectric Point (pI)

64.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 315
AccII CGCG 3 cut(s) 230, 333, 517
AccIII TCCGGA 2 cut(s) 16, 388
AciI CCGC 5 cut(s) 172, 225, 333, 380, 427
AclWI GGATC 2 cut(s) 199, 212
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 400
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 6 cut(s) 19, 141, 303, 395, 444, 504
AlwI GGATC 2 cut(s) 199, 212
Ama87I CYCGRG 3 cut(s) 355, 468, 484
Aor13HI TCCGGA 2 cut(s) 16, 388
AoxI GGCC 4 cut(s) 33, 84, 305, 334
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 2 cut(s) 230, 333
AspS9I GGNCC 2 cut(s) 305, 377
AsuHPI GGTGA 1 cut(s) 338
AvaI CYCGRG 3 cut(s) 355, 468, 484
AvaII GGWCC 1 cut(s) 377
BamHI GGATCC 1 cut(s) 204
BanII GRGCYC 1 cut(s) 512
BauI CACGAG 1 cut(s) 453
BccI CCATC 3 cut(s) 283, 305, 520
BciVI GTATCC 1 cut(s) 505
BfaI CTAG 1 cut(s) 504
BfuI GTATCC 1 cut(s) 505
BisI GCNGC 4 cut(s) 173, 226, 334, 428
BlsI GCNGC 4 cut(s) 174, 227, 335, 429
Bme18I GGWCC 1 cut(s) 377
BmeT110I CYCGRG 3 cut(s) 355, 468, 484
BmgT120I GGNCC 2 cut(s) 305, 377
BmiI GGNNCC 3 cut(s) 206, 465, 509
BsaHI GRCGYC 1 cut(s) 400
BsaJI CCNNGG 3 cut(s) 243, 301, 443
BsaWI WCCGGW 2 cut(s) 16, 388
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 141, 303, 395, 444, 504
Bse118I RCCGGY 1 cut(s) 168
BseAI TCCGGA 2 cut(s) 16, 388
BseDI CCNNGG 3 cut(s) 243, 301, 443
BseGI GGATG 2 cut(s) 275, 297
BseLI CCNNNNNNNGG 6 cut(s) 19, 141, 303, 395, 444, 504
BseRI GAGGAG 2 cut(s) 179, 472
Bsh1236I CGCG 3 cut(s) 230, 333, 517
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 4 cut(s) 35, 86, 307, 336
BsiEI CGRYCG 1 cut(s) 94
BsiHKCI CYCGRG 3 cut(s) 355, 468, 484
BsiSI CCGG 3 cut(s) 17, 169, 389
BslFI GGGAC 2 cut(s) 280, 373
BslI CCNNNNNNNGG 6 cut(s) 19, 141, 303, 395, 444, 504
BsmFI GGGAC 2 cut(s) 280, 373
BsnI GGCC 4 cut(s) 35, 86, 307, 336
BsoBI CYCGRG 3 cut(s) 355, 468, 484
Bsp1286I GDGCHC 1 cut(s) 512
Bsp13I TCCGGA 2 cut(s) 16, 388
Bsp143I GATC 3 cut(s) 91, 204, 518
Bsp19I CCATGG 1 cut(s) 243
Bsp68I TCGCGA 1 cut(s) 517
BspACI CCGC 5 cut(s) 172, 225, 333, 380, 427
BspANI GGCC 4 cut(s) 35, 86, 307, 336
BspEI TCCGGA 2 cut(s) 16, 388
BspFNI CGCG 3 cut(s) 230, 333, 517
BspLI GGNNCC 3 cut(s) 206, 465, 509
BspPI GGATC 2 cut(s) 199, 212
BsrFI RCCGGY 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 3 cut(s) 243, 301, 443
BssMI GATC 3 cut(s) 91, 204, 518
BssNI GRCGYC 1 cut(s) 400
BssSI CACGAG 1 cut(s) 453
BssT1I CCWWGG 2 cut(s) 243, 301
Bst2BI CACGAG 1 cut(s) 453
Bst6I CTCTTC 4 cut(s) 18, 134, 143, 403
BstACI GRCGYC 1 cut(s) 400
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 243
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 275, 297
BstFNI CGCG 3 cut(s) 230, 333, 517
BstHHI GCGC 2 cut(s) 230, 333
BstKTI GATC 3 cut(s) 94, 207, 521
BstMBI GATC 3 cut(s) 91, 204, 518
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstUI CGCG 3 cut(s) 230, 333, 517
BstX2I RGATCY 1 cut(s) 204
BstXI CCANNNNNNTGG 1 cut(s) 250
BstYI RGATCY 1 cut(s) 204
BsuI GTATCC 1 cut(s) 505
BsuRI GGCC 4 cut(s) 35, 86, 307, 336
BtgI CCRYGG 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 275, 297
BtuMI TCGCGA 1 cut(s) 517
CfoI GCGC 2 cut(s) 230, 333
Cfr10I RCCGGY 1 cut(s) 168
Cfr13I GGNCC 2 cut(s) 305, 377
CseI GACGC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 49
CviAII CATG 4 cut(s) 136, 244, 459, 500
CviJI RGCY 8 cut(s) 35, 86, 241, 254, 307, 336, 430, 510
CviKI_1 RGCY 8 cut(s) 35, 86, 241, 254, 307, 336, 430, 510
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 237
DpnI GATC 3 cut(s) 93, 206, 520
DpnII GATC 3 cut(s) 91, 204, 518
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 4 cut(s) 18, 134, 143, 403
EarI CTCTTC 4 cut(s) 18, 134, 143, 403
Eco130I CCWWGG 2 cut(s) 243, 301
Eco147I AGGCCT 2 cut(s) 35, 86
Eco24I GRGCYC 1 cut(s) 512
Eco32I GATATC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 377
Eco88I CYCGRG 3 cut(s) 355, 468, 484
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 125
EcoRV GATATC 1 cut(s) 60
EcoT14I CCWWGG 2 cut(s) 243, 301
EcoT38I GRGCYC 1 cut(s) 512
ErhI CCWWGG 2 cut(s) 243, 301
FaeI CATG 4 cut(s) 139, 247, 462, 503
FaiI YATR 7 cut(s) 67, 137, 245, 271, 385, 460, 501
FaqI GGGAC 2 cut(s) 280, 373
FatI CATG 4 cut(s) 135, 243, 458, 499
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 4 cut(s) 173, 226, 334, 428
FokI GGATG 2 cut(s) 262, 284
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 4 cut(s) 173, 226, 334, 428
FspBI CTAG 1 cut(s) 504
GlaI GCGC 2 cut(s) 229, 332
GluI GCNGC 4 cut(s) 173, 226, 334, 428
HaeIII GGCC 4 cut(s) 35, 86, 307, 336
HapII CCGG 3 cut(s) 17, 169, 389
HgaI GACGC 1 cut(s) 389
HhaI GCGC 2 cut(s) 230, 333
Hin1I GRCGYC 1 cut(s) 400
Hin1II CATG 4 cut(s) 139, 247, 462, 503
Hin6I GCGC 2 cut(s) 228, 331
HinP1I GCGC 2 cut(s) 228, 331
HinfI GANTC 2 cut(s) 96, 479
HpaII CCGG 3 cut(s) 17, 169, 389
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 1 cut(s) 316
Hpy188III TCNNGA 6 cut(s) 17, 130, 389, 470, 516, 522
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 6 cut(s) 23, 46, 257, 295, 417, 449
HpyCH4V TGCA 1 cut(s) 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 400
Hsp92II CATG 4 cut(s) 139, 247, 462, 503
HspAI GCGC 2 cut(s) 228, 331
Kpn2I TCCGGA 2 cut(s) 16, 388
Kzo9I GATC 3 cut(s) 91, 204, 518
LmnI GCTCC 1 cut(s) 507
LpnPI CCDG 3 cut(s) 30, 182, 402
MaeI CTAG 1 cut(s) 504
MalI GATC 3 cut(s) 93, 206, 520
MboI GATC 3 cut(s) 91, 204, 518
MboII GAAGA 7 cut(s) 35, 134, 151, 157, 160, 420, 485
MfeI CAATTG 1 cut(s) 290
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 512
MluCI AATT 3 cut(s) 4, 125, 290
MlyI GAGTC 2 cut(s) 105, 473
MmeI TCCRAC 1 cut(s) 183
MroI TCCGGA 2 cut(s) 16, 388
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 3 cut(s) 17, 169, 389
MunI CAATTG 1 cut(s) 290
MvnI CGCG 3 cut(s) 230, 333, 517
MwoI GCNNNNNNNGC 1 cut(s) 172
NcoI CCATGG 1 cut(s) 243
NdeII GATC 3 cut(s) 91, 204, 518
NlaIII CATG 4 cut(s) 139, 247, 462, 503
NlaIV GGNNCC 3 cut(s) 206, 465, 509
NruI TCGCGA 1 cut(s) 517
PaeR7I CTCGAG 2 cut(s) 468, 484
PceI AGGCCT 2 cut(s) 35, 86
PcsI WCGNNNNNNNCGW 1 cut(s) 451
PkrI GCNGC 4 cut(s) 174, 227, 335, 429
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 2 cut(s) 104, 473
PpsI GAGTC 2 cut(s) 104, 473
PspN4I GGNNCC 3 cut(s) 206, 465, 509
PspPI GGNCC 2 cut(s) 305, 377
PspXI VCTCGAGB 1 cut(s) 484
PsuI RGATCY 1 cut(s) 204
PvuI CGATCG 1 cut(s) 94
RruI TCGCGA 1 cut(s) 517
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 4 cut(s) 173, 226, 334, 428
Sau3AI GATC 3 cut(s) 91, 204, 518
Sau96I GGNCC 2 cut(s) 305, 377
SchI GAGTC 2 cut(s) 105, 473
SduI GDGCHC 1 cut(s) 512
SetI ASST 6 cut(s) 15, 30, 200, 328, 396, 469
Sfr274I CTCGAG 2 cut(s) 468, 484
SgrAI CRCCGGYG 1 cut(s) 168
SinI GGWCC 1 cut(s) 377
SlaI CTCGAG 2 cut(s) 468, 484
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 2 cut(s) 468, 484
SmoI CTYRAG 2 cut(s) 468, 484
Sse9I AATT 3 cut(s) 4, 125, 290
SseBI AGGCCT 2 cut(s) 35, 86
SsiI CCGC 5 cut(s) 172, 225, 333, 380, 427
SspMI CTAG 1 cut(s) 504
StuI AGGCCT 2 cut(s) 35, 86
StyI CCWWGG 2 cut(s) 243, 301
TaqI TCGA 4 cut(s) 94, 131, 469, 485
TasI AATT 3 cut(s) 4, 125, 290
TauI GCSGC 4 cut(s) 175, 228, 336, 430
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TspDTI ATGAA 3 cut(s) 17, 135, 152
TspGWI ACGGA 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 377
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 1 cut(s) 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XhoI CTCGAG 2 cut(s) 468, 484
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.