Rmu_sc0000276.1_g000040

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000276.1
OG0000176
Physical Location & Seq
Forward (+)
134351 .. 134641
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000276.1_g000040.1.cds

Sequence Viewer

Length: 291 bp
atggattacgaccttccagaggaagagatagaggccttccactctttgtacgagagactatcctcgtacctggtggaaaaagaggcctatgatcaagtcacgaacttggaaattgttaacaaggagctctctgaccatgaagaggaagaagaggaaattcagctcaccccagcggcattggatgacacacctcctaaggttagggatcctactgagaaggtcaacctgggaacagtcgacgagcctatggaagtggctattagcttttatttagagcctactgagaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

96

Amino Acids

11.13

Weight (kDa)

4.05

Isoelectric Point (pI)

61.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 237
AciI CCGC 1 cut(s) 173
AclWI GGATC 2 cut(s) 200, 213
AcsI RAATTY 1 cut(s) 156
AfaI GTAC 2 cut(s) 50, 68
AfiI CCNNNNNNNGG 2 cut(s) 19, 142
AjnI CCWGG 2 cut(s) 69, 225
AluBI AGCT 3 cut(s) 127, 163, 264
AluI AGCT 3 cut(s) 127, 163, 264
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 2 cut(s) 200, 213
AoxI GGCC 2 cut(s) 33, 84
ApoI RAATTY 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 157
AxyI CCTNAGG 1 cut(s) 195
BamHI GGATCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 129
BciT130I CCWGG 2 cut(s) 71, 227
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 49
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 2 cut(s) 71, 227
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 2 cut(s) 71, 227
BsaJI CCNNGG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 142
Bse21I CCTNAGG 1 cut(s) 195
BseBI CCWGG 2 cut(s) 71, 227
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 19, 142
BseMII CTCAG 2 cut(s) 204, 273
BseYI CCCAGC 1 cut(s) 169
BshFI GGCC 2 cut(s) 35, 86
BsiHKAI GWGCWC 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 19, 142
BsmAI GTCTC 1 cut(s) 49
BsnI GGCC 2 cut(s) 35, 86
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 91, 205
BspACI CCGC 1 cut(s) 173
BspANI GGCC 2 cut(s) 35, 86
BspCNI CTCAG 2 cut(s) 205, 274
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 2 cut(s) 200, 213
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 2 cut(s) 91, 205
Bst2UI CCWGG 2 cut(s) 71, 227
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 3 cut(s) 18, 135, 144
BstDEI CTNAG 3 cut(s) 195, 213, 282
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 2 cut(s) 94, 208
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 2 cut(s) 91, 205
BstNI CCWGG 2 cut(s) 71, 227
BstSCI CCNGG 2 cut(s) 69, 225
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 195
BsuRI GGCC 2 cut(s) 35, 86
BtsCI GGATG 1 cut(s) 187
CsiI ACCWGGT 1 cut(s) 69
Csp6I GTAC 2 cut(s) 49, 67
CviAII CATG 1 cut(s) 137
CviJI RGCY 8 cut(s) 35, 86, 127, 163, 244, 257, 264, 277
CviKI_1 RGCY 8 cut(s) 35, 86, 127, 163, 244, 257, 264, 277
CviQI GTAC 2 cut(s) 49, 67
DdeI CTNAG 3 cut(s) 195, 213, 282
DpnI GATC 2 cut(s) 93, 207
DpnII GATC 2 cut(s) 91, 205
Eam1104I CTCTTC 3 cut(s) 18, 135, 144
EarI CTCTTC 3 cut(s) 18, 135, 144
Ecl136II GAGCTC 1 cut(s) 127
Eco147I AGGCCT 2 cut(s) 35, 86
Eco24I GRGCYC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 127
Eco81I CCTNAGG 1 cut(s) 195
EcoICRI GAGCTC 1 cut(s) 127
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 69, 225
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 1 cut(s) 140
FaiI YATR 3 cut(s) 90, 138, 248
FatI CATG 1 cut(s) 136
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
GsaI CCCAGC 1 cut(s) 173
HaeIII GGCC 2 cut(s) 35, 86
Hin1II CATG 1 cut(s) 140
HincII GTYRAC 3 cut(s) 118, 223, 238
HindII GTYRAC 3 cut(s) 118, 223, 238
HpaI GTTAAC 1 cut(s) 118
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 3 cut(s) 118, 223, 238
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 17, 100
Hpy8I GTNNAC 3 cut(s) 118, 223, 238
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 23, 46, 211
HpyCH4III ACNGT 1 cut(s) 235
HpyF3I CTNAG 3 cut(s) 195, 213, 282
Hsp92II CATG 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 91
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 91, 205
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 6 cut(s) 30, 56, 83, 183, 212, 239
MabI ACCWGGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 97
MalI GATC 2 cut(s) 93, 207
MboI GATC 2 cut(s) 91, 205
MboII GAAGA 4 cut(s) 35, 152, 158, 161
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 2 cut(s) 111, 156
MnlI CCTC 7 cut(s) 13, 25, 73, 76, 136, 145, 201
MseI TTAA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 71, 227
MvaI CCWGG 2 cut(s) 71, 227
NdeII GATC 2 cut(s) 91, 205
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 97
PceI AGGCCT 2 cut(s) 35, 86
PkrI GCNGC 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 2 cut(s) 69, 225
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 2 cut(s) 69, 225
PspN4I GGNNCC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 2 cut(s) 50, 68
RsaNI GTAC 2 cut(s) 49, 67
SacI GAGCTC 1 cut(s) 129
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 91, 205
ScrFI CCNGG 2 cut(s) 71, 227
SduI GDGCHC 1 cut(s) 129
SetI ASST 9 cut(s) 15, 72, 129, 165, 193, 201, 222, 228, 266
SexAI ACCWGGT 1 cut(s) 69
Sse9I AATT 2 cut(s) 111, 156
SseBI AGGCCT 2 cut(s) 35, 86
SsiI CCGC 1 cut(s) 173
SstI GAGCTC 1 cut(s) 129
StuI AGGCCT 2 cut(s) 35, 86
StyD4I CCNGG 2 cut(s) 69, 225
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 237
TasI AATT 2 cut(s) 111, 156
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 153
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 1 cut(s) 156
XmiI GTMKAC 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.