Rw3G028190

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
41411017 .. 41411721
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G028190.1

Sequence Viewer

Length: 567 bp
ATGGATCACGAACTCATGGAGGAAGAGGTAGAGGCCTTCTATTCCTTGTACGAGAGGCTATCCTTATACTTGGTGGAAAAAGAGGCCTATGATCGAGTCGCGACCTTAGAAATTGTTAATGAAGACACTTACTTAGAGCCTAGCGAGAAACAGAGGCTCTTCGAATTATTGCTGGAATTCAAGGACTGCTTCGCGGAAAAATACGAGGACATGCCAAGCCTATCACCAGACTTGGTTTGCCACCAACTACCAACGCTGCCTGATAAGAGGCCTTTGAAGCAAAAGCCCCGAAGAATGAACTCGGAGACCCAAGTTTTGGTCAAAGAGGAAGTCGAAAAGATGCACAAGTCGGGCATTATCAGGGTAGCCAAGTACAATCAATGGTTGTCCAATATAGTGCCTGTTTGCAAGAAGAATGGCAAGATGAGGATCTGCGTGGATTACAGAGACCTTAATTTGGCTACACCTAAAGACGTCTACCCCATGCATGTTGCGGACATGTTGGTAGATGCAGTTGCAGGGCACGAACTATTGTCTTTCATGGACGGCACAGCGGGATATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

188

Amino Acids

21.96

Weight (kDa)

5.12

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 477
AccB7I CCANNNNNTGG 1 cut(s) 316
AccI GTMKAC 1 cut(s) 477
AccII CGCG 2 cut(s) 101, 194
AciI CCGC 3 cut(s) 194, 494, 554
AclWI GGATC 2 cut(s) 12, 437
AcsI RAATTY 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 474
AfaI GTAC 2 cut(s) 50, 374
AfiI CCNNNNNNNGG 2 cut(s) 316, 457
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 2 cut(s) 181, 277
Alw26I GTCTC 2 cut(s) 299, 441
AlwI GGATC 2 cut(s) 12, 437
AoxI GGCC 3 cut(s) 33, 84, 269
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 176
ArsI GACNNNNNNTTYG 4 cut(s) 298, 315, 330, 347
AsuHPI GGTGA 1 cut(s) 216
AsuII TTCGAA 1 cut(s) 162
BaeGI GKGCMC 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 243
BceAI ACGGC 1 cut(s) 562
BcoDI GTCTC 2 cut(s) 299, 441
BfaI CTAG 2 cut(s) 141, 565
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
BmsI GCATC 2 cut(s) 330, 499
BpiI GAAGAC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 428
BsaHI GRCGYC 1 cut(s) 474
BsaI GGTCTC 2 cut(s) 299, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 457
Bse8I GATNNNNATC 1 cut(s) 428
BseJI GATNNNNATC 1 cut(s) 428
BseLI CCNNNNNNNGG 2 cut(s) 316, 457
BseSI GKGCMC 1 cut(s) 525
BseXI GCAGC 1 cut(s) 243
Bsh1236I CGCG 2 cut(s) 101, 194
BshFI GGCC 3 cut(s) 35, 86, 271
BslI CCNNNNNNNGG 2 cut(s) 316, 457
BsmAI GTCTC 2 cut(s) 299, 441
BsnI GGCC 3 cut(s) 35, 86, 271
Bso31I GGTCTC 2 cut(s) 299, 441
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 3 cut(s) 4, 91, 429
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 3 cut(s) 194, 494, 554
BspANI GGCC 3 cut(s) 35, 86, 271
BspFNI CGCG 2 cut(s) 101, 194
BspPI GGATC 2 cut(s) 12, 437
BspQI GCTCTTC 1 cut(s) 164
BspT104I TTCGAA 1 cut(s) 162
BspTNI GGTCTC 2 cut(s) 299, 441
BssMI GATC 3 cut(s) 4, 91, 429
BssNI GRCGYC 1 cut(s) 474
Bst6I CTCTTC 2 cut(s) 18, 164
BstACI GRCGYC 1 cut(s) 474
BstBI TTCGAA 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 106, 133
BstFNI CGCG 2 cut(s) 101, 194
BstKTI GATC 3 cut(s) 7, 94, 432
BstMAI GTCTC 2 cut(s) 299, 441
BstMBI GATC 3 cut(s) 4, 91, 429
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNSI RCATGY 3 cut(s) 214, 491, 502
BstSLI GKGCMC 1 cut(s) 525
BstUI CGCG 2 cut(s) 101, 194
BstV1I GCAGC 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BsuRI GGCC 3 cut(s) 35, 86, 271
BtuMI TCGCGA 1 cut(s) 101
Csp6I GTAC 2 cut(s) 49, 373
CviAII CATG 6 cut(s) 16, 211, 484, 488, 499, 541
CviQI GTAC 2 cut(s) 49, 373
DdeI CTNAG 2 cut(s) 106, 133
DpnI GATC 3 cut(s) 6, 93, 431
DpnII GATC 3 cut(s) 4, 91, 429
Eam1104I CTCTTC 2 cut(s) 18, 164
EarI CTCTTC 2 cut(s) 18, 164
Eco147I AGGCCT 3 cut(s) 35, 86, 271
Eco31I GGTCTC 2 cut(s) 299, 441
Eco32I GATATC 1 cut(s) 560
EcoRI GAATTC 1 cut(s) 176
EcoRV GATATC 1 cut(s) 560
EcoT22I ATGCAT 1 cut(s) 489
FaeI CATG 6 cut(s) 19, 214, 487, 491, 502, 544
FaiI YATR 9 cut(s) 17, 67, 90, 212, 395, 485, 489, 500, 542
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 6 cut(s) 15, 210, 483, 487, 498, 540
FauI CCCGC 1 cut(s) 547
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 2 cut(s) 141, 565
GluI GCNGC 1 cut(s) 257
HaeIII GGCC 3 cut(s) 35, 86, 271
Hin1I GRCGYC 1 cut(s) 474
Hin1II CATG 6 cut(s) 19, 214, 487, 491, 502, 544
HinfI GANTC 1 cut(s) 96
HphI GGTGA 1 cut(s) 216
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 2 cut(s) 8, 100
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 5 cut(s) 343, 408, 487, 512, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 2 cut(s) 106, 133
HpySE526I ACGT 1 cut(s) 474
Hsp92I GRCGYC 1 cut(s) 474
Hsp92II CATG 6 cut(s) 19, 214, 487, 491, 502, 544
Kzo9I GATC 3 cut(s) 4, 91, 429
LguI GCTCTTC 1 cut(s) 164
LpnPI CCDG 6 cut(s) 158, 240, 273, 346, 414, 504
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 2 cut(s) 330, 499
MaeI CTAG 2 cut(s) 141, 565
MaeII ACGT 1 cut(s) 474
MalI GATC 3 cut(s) 6, 93, 431
MboI GATC 3 cut(s) 4, 91, 429
MboII GAAGA 5 cut(s) 35, 134, 151, 303, 424
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 525
MluCI AATT 4 cut(s) 111, 164, 176, 454
MlyI GAGTC 1 cut(s) 105
Mph1103I ATGCAT 1 cut(s) 489
MseI TTAA 2 cut(s) 117, 453
MspA1I CMGCKG 1 cut(s) 554
MvnI CGCG 2 cut(s) 101, 194
MwoI GCNNNNNNNGC 1 cut(s) 277
NdeII GATC 3 cut(s) 4, 91, 429
NlaIII CATG 6 cut(s) 19, 214, 487, 491, 502, 544
NruI TCGCGA 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 489
NspI RCATGY 3 cut(s) 214, 491, 502
NspV TTCGAA 1 cut(s) 162
PceI AGGCCT 3 cut(s) 35, 86, 271
PciI ACATGT 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 316
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PscI ACATGT 1 cut(s) 498
PsuI RGATCY 1 cut(s) 429
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 2 cut(s) 50, 374
RsaNI GTAC 2 cut(s) 49, 373
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 117, 453
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 3 cut(s) 4, 91, 429
SchI GAGTC 1 cut(s) 105
SduI GDGCHC 1 cut(s) 525
SetI ASST 5 cut(s) 30, 107, 453, 469, 477
SfaNI GCATC 2 cut(s) 330, 499
SfuI TTCGAA 1 cut(s) 162
Sse9I AATT 4 cut(s) 111, 164, 176, 454
SseBI AGGCCT 3 cut(s) 35, 86, 271
SsiI CCGC 3 cut(s) 194, 494, 554
SspMI CTAG 2 cut(s) 141, 565
StuI AGGCCT 3 cut(s) 35, 86, 271
TaiI ACGT 1 cut(s) 477
TaqI TCGA 3 cut(s) 94, 162, 333
TasI AATT 4 cut(s) 111, 164, 176, 454
TatI WGTACW 1 cut(s) 372
Tru1I TTAA 2 cut(s) 117, 453
Tru9I TTAA 2 cut(s) 117, 453
TseI GCWGC 1 cut(s) 256
TspDTI ATGAA 3 cut(s) 135, 311, 529
Van91I CCANNNNNTGG 1 cut(s) 316
XapI RAATTY 1 cut(s) 176
XceI RCATGY 3 cut(s) 214, 491, 502
XmiI GTMKAC 1 cut(s) 477
XspI CTAG 2 cut(s) 141, 565
ZraI GACGTC 1 cut(s) 475
Zsp2I ATGCAT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.