Rmu_co8164780.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8164780.1
OG0000176
Physical Location & Seq
Reverse (-)
2 .. 626
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8164780.1_g000001.1.cds

Sequence Viewer

Length: 565 bp
ctgtgggctcgtgcaatcaagtggcaagccaagacagagaaagcatccacaaagctgacaacaggggccattgaagaattaaagaaagagcaagccagtctcaatcagcagttgaaaaatgaggaaatggaagtcgattatggggaaaaggaataccaaggtgactatgataatgaaaccagaatcgactacgacataggggatgacacagcctttgatatagaaactttatccccattttacaaaggcaaggccacctttgggaaaggtgaaggtaatacaatggacatcaatatggtttatgtccttccttcagaactcaaaactcaaccaggtcagtcgaatgaattgatcggcgactttgttgccaatcgacatcctcgatttgagattgatgaagttgatgcacagttgaaggatgaagaaggtcgtgtgttactcataaaaccaaaggccaaaatggctcaacatctgaagccgttatacatcatggcttacatagagggatatccaataatgaaagttcttgtagacgacggtgcagcagttaatgtgttacctacag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

188

Amino Acids

21.28

Weight (kDa)

4.74

Isoelectric Point (pI)

31.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 531
AcuI CTGAAG 2 cut(s) 297, 494
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 3 cut(s) 74, 115, 415
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 104
AoxI GGCC 3 cut(s) 66, 252, 453
ApeKI GCWGC 1 cut(s) 542
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 2 cut(s) 173, 281
BanII GRGCYC 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 467, 499
BauI CACGAG 1 cut(s) 9
BbvI GCAGC 1 cut(s) 554
BceAI ACGGC 1 cut(s) 463
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 561
BglI GCCNNNNNGGC 1 cut(s) 461
BisI GCNGC 1 cut(s) 543
BlsI GCNGC 1 cut(s) 544
Bme1390I CCNGG 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 2 cut(s) 53, 394
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 4 cut(s) 44, 208, 376, 424
BseLI CCNNNNNNNGG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 554
BsgI GTGCAG 1 cut(s) 561
BshFI GGCC 3 cut(s) 68, 254, 455
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 3 cut(s) 68, 254, 455
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 351
BspANI GGCC 3 cut(s) 68, 254, 455
BspLI GGNNCC 1 cut(s) 67
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 351
BssSI CACGAG 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 411, 539
BstC8I GCNNGC 2 cut(s) 27, 93
BstF5I GGATG 4 cut(s) 44, 208, 376, 424
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 1 cut(s) 554
BsuRI GGCC 3 cut(s) 68, 254, 455
BtsCI GGATG 4 cut(s) 44, 208, 376, 424
Cac8I GCNNGC 2 cut(s) 27, 93
Cfr13I GGNCC 1 cut(s) 66
CsiI ACCWGGT 1 cut(s) 331
CviAII CATG 1 cut(s) 490
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 509
Eco57I CTGAAG 2 cut(s) 297, 494
EcoRII CCWGG 1 cut(s) 331
EcoRV GATATC 1 cut(s) 509
EcoT14I CCWWGG 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 1 cut(s) 493
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 1 cut(s) 489
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 1 cut(s) 543
FokI GGATG 4 cut(s) 31, 215, 363, 431
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 543
GluI GCNGC 1 cut(s) 543
HaeIII GGCC 3 cut(s) 68, 254, 455
Hin1II CATG 1 cut(s) 493
HinfI GANTC 1 cut(s) 183
HphI GGTGA 2 cut(s) 173, 281
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 2 cut(s) 316, 474
Hpy8I GTNNAC 1 cut(s) 532
Hpy99I CGWCG 1 cut(s) 539
HpyAV CCTTC 5 cut(s) 266, 317, 321, 409, 419
HpyCH4III ACNGT 2 cut(s) 411, 539
HpyCH4V TGCA 3 cut(s) 14, 407, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
Hsp92II CATG 1 cut(s) 493
Kzo9I GATC 1 cut(s) 351
LpnPI CCDG 5 cut(s) 48, 109, 193, 318, 345
Lsp1109I GCAGC 1 cut(s) 554
LweI GCATC 2 cut(s) 53, 394
MabI ACCWGGT 1 cut(s) 331
MaeIII GTNAC 3 cut(s) 161, 435, 555
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 2 cut(s) 86, 434
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 2 cut(s) 77, 347
MnlI CCTC 3 cut(s) 115, 390, 496
MseI TTAA 2 cut(s) 80, 549
MslI CAYNNNNRTG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 461
NdeII GATC 1 cut(s) 351
NlaIII CATG 1 cut(s) 493
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 1 cut(s) 379
PfeI GAWTC 1 cut(s) 183
PkrI GCNGC 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 2 cut(s) 80, 549
SatI GCNGC 1 cut(s) 543
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 10
SetI ASST 8 cut(s) 57, 163, 260, 271, 277, 337, 430, 562
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 2 cut(s) 53, 394
SfcI CTRYAG 1 cut(s) 561
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 2 cut(s) 77, 347
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 411, 539
TaqI TCGA 5 cut(s) 135, 186, 341, 373, 382
TasI AATT 2 cut(s) 77, 347
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 2 cut(s) 80, 549
Tru9I TTAA 2 cut(s) 80, 549
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 542
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 5 cut(s) 189, 360, 411, 435, 533
XmiI GTMKAC 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.