Rmu_sc0003809.1_g000028

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003809.1
OG0000176
Physical Location & Seq
Reverse (-)
111739 .. 112164
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003809.1_g000028.1.cds

Sequence Viewer

Length: 426 bp
atggaggaagaggtagaggccgtccattccttgtacgagaggctatcctcatacttggtggaaaaagaggcctatgatcgagtcgcgaccttagaaattgttaatgaagagttcacggatcaagaagacgaggaagaagagattcaacttgctccagcggcattggatgacacacctccgaaggttagggaccctactgaaaaggtcaatctgggaacaactgatgagcctataaaagtggctatcagcacttacttagagcctagcgagaaacagaggctcgacaaattattgttggaattcaagaactgctttgcgaaaaaatatgaggacatgtcaggcctatcatcagacttggtatgccaccaactaccaacgtttcttgataagaggcatgtgaagcaagaaccgcgaagaatgaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

141

Amino Acids

16.36

Weight (kDa)

4.57

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 86, 412
AciI CCGC 2 cut(s) 158, 410
AclI AACGTT 1 cut(s) 377
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 299
AfaI GTAC 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 2 cut(s) 146, 304
AlwI GGATC 1 cut(s) 126
AoxI GGCC 3 cut(s) 18, 69, 340
ApoI RAATTY 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 190
AvaII GGWCC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 132
BceAI ACGGC 1 cut(s) 5
BfaI CTAG 2 cut(s) 264, 424
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 191, 192
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 138
BseGI GGATG 1 cut(s) 172
Bsh1236I CGCG 2 cut(s) 86, 412
BshFI GGCC 3 cut(s) 20, 71, 342
BslFI GGGAC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 3 cut(s) 20, 71, 342
Bsp143I GATC 2 cut(s) 76, 118
Bsp68I TCGCGA 1 cut(s) 86
BspACI CCGC 2 cut(s) 158, 410
BspANI GGCC 3 cut(s) 20, 71, 342
BspFNI CGCG 2 cut(s) 86, 412
BspLI GGNNCC 2 cut(s) 191, 192
BspPI GGATC 1 cut(s) 126
BssMI GATC 2 cut(s) 76, 118
Bst6I CTCTTC 3 cut(s) 3, 102, 132
BstDEI CTNAG 2 cut(s) 91, 256
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 2 cut(s) 86, 412
BstKTI GATC 2 cut(s) 79, 121
BstMBI GATC 2 cut(s) 76, 118
BstMWI GCNNNNNNNGC 3 cut(s) 158, 400, 409
BstNSI RCATGY 2 cut(s) 337, 398
BstUI CGCG 2 cut(s) 86, 412
BstV2I GAAGAC 1 cut(s) 132
BsuRI GGCC 3 cut(s) 20, 71, 342
BtsCI GGATG 1 cut(s) 172
BtuMI TCGCGA 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 34
CviAII CATG 2 cut(s) 334, 395
CviJI RGCY 8 cut(s) 20, 43, 71, 229, 242, 262, 280, 342
CviKI_1 RGCY 8 cut(s) 20, 43, 71, 229, 242, 262, 280, 342
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 2 cut(s) 91, 256
DpnI GATC 2 cut(s) 78, 120
DpnII GATC 2 cut(s) 76, 118
Eam1104I CTCTTC 3 cut(s) 3, 102, 132
EarI CTCTTC 3 cut(s) 3, 102, 132
Eco147I AGGCCT 2 cut(s) 71, 342
Eco47I GGWCC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 299
FaeI CATG 2 cut(s) 337, 398
FaiI YATR 7 cut(s) 52, 75, 233, 327, 335, 361, 396
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 1 cut(s) 203
FatI CATG 2 cut(s) 333, 394
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 2 cut(s) 264, 424
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 3 cut(s) 20, 71, 342
Hin1II CATG 2 cut(s) 337, 398
HinfI GANTC 2 cut(s) 81, 142
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 180, 352
Hpy188III TCNNGA 4 cut(s) 85, 122, 304, 383
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 400, 409
HpyF3I CTNAG 2 cut(s) 91, 256
HpySE526I ACGT 1 cut(s) 377
Hsp92II CATG 2 cut(s) 337, 398
KflI GGGWCCC 1 cut(s) 190
Kzo9I GATC 2 cut(s) 76, 118
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 3 cut(s) 168, 197, 324
MaeI CTAG 2 cut(s) 264, 424
MaeII ACGT 1 cut(s) 377
MalI GATC 2 cut(s) 78, 120
MboI GATC 2 cut(s) 76, 118
MboII GAAGA 6 cut(s) 20, 119, 137, 146, 149, 426
MluCI AATT 3 cut(s) 96, 287, 299
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 276
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 158
MvnI CGCG 2 cut(s) 86, 412
MwoI GCNNNNNNNGC 3 cut(s) 158, 400, 409
NdeII GATC 2 cut(s) 76, 118
NlaIII CATG 2 cut(s) 337, 398
NlaIV GGNNCC 2 cut(s) 191, 192
NruI TCGCGA 1 cut(s) 86
NspI RCATGY 2 cut(s) 337, 398
PceI AGGCCT 2 cut(s) 71, 342
PciI ACATGT 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 190
PscI ACATGT 1 cut(s) 333
Psp1406I AACGTT 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 190
PspN4I GGNNCC 2 cut(s) 191, 192
PspPI GGNCC 1 cut(s) 190
PspPPI RGGWCCY 1 cut(s) 190
RruI TCGCGA 1 cut(s) 86
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 2 cut(s) 76, 118
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 90
SetI ASST 6 cut(s) 15, 92, 178, 186, 207, 380
SinI GGWCC 1 cut(s) 190
Sse9I AATT 3 cut(s) 96, 287, 299
SseBI AGGCCT 2 cut(s) 71, 342
SsiI CCGC 2 cut(s) 158, 410
SspMI CTAG 2 cut(s) 264, 424
StuI AGGCCT 2 cut(s) 71, 342
TaiI ACGT 1 cut(s) 380
TaqI TCGA 2 cut(s) 79, 282
TasI AATT 3 cut(s) 96, 287, 299
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 299
XceI RCATGY 2 cut(s) 337, 398
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 2 cut(s) 264, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.