Rroxscaffold_2G00077690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000176
Physical Location & Seq
Forward (+)
1217186 .. 1219668
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00077690.1

Sequence Viewer

Length: 384 bp
ATGGATTACGACCTCCCGGAGGAAGGGATAGAGGCCTTCCACTCGCCGTACGAAAGATTATCATCGTACTTAGTGGAAAAAGAGGCCTATGATCGAGTCGCGACCTTAGAGGTCGTCAATGAAAAACTCTCGATAAGGAACAAGAGGATGAGCGAGGCCCCGATAGTGGGCCCGGGCTTGTCCGGCCTGCGCGGTCGCGGCCGCTCTTTCATTAAGCCGTTGGGGGAGATTCGTAGCAATTCGTCTATCTCAATGAACTCGTTCTCGGTGATGGCGTACTCGCGCGAAGAACCCTCAAATACTCAAGAGCACGACGGATGCCCCGAGAAACGAGGATATCGGGACTCAAAAGAAGGTGAAGTCCGTCCCTGGCCTCATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.43

Weight (kDa)

5.67

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 204
AccII CGCG 5 cut(s) 101, 192, 198, 283, 285
AciI CCGC 3 cut(s) 192, 198, 202
AcoI YGGCCR 1 cut(s) 199
AfaI GTAC 3 cut(s) 50, 68, 278
AfiI CCNNNNNNNGG 4 cut(s) 19, 23, 166, 167
AjnI CCWGG 1 cut(s) 368
Alw21I GWGCWC 1 cut(s) 312
Ama87I CYCGRG 2 cut(s) 172, 323
AoxI GGCC 7 cut(s) 33, 84, 156, 169, 184, 199, 371
ApaI GGGCCC 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 2 cut(s) 192, 285
AspS9I GGNCC 3 cut(s) 157, 169, 170
AsuC2I CCSGG 3 cut(s) 17, 173, 174
AsuHPI GGTGA 2 cut(s) 280, 368
AvaI CYCGRG 2 cut(s) 172, 323
BaeGI GKGCMC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 312
BccI CCATC 1 cut(s) 265
BceAI ACGGC 2 cut(s) 31, 202
BciT130I CCWGG 1 cut(s) 370
BcnI CCSGG 3 cut(s) 17, 173, 174
BisI GCNGC 2 cut(s) 199, 202
BlsI GCNGC 2 cut(s) 200, 203
Bme1390I CCNGG 4 cut(s) 17, 173, 174, 370
BmeT110I CYCGRG 2 cut(s) 172, 323
BmgT120I GGNCC 3 cut(s) 157, 169, 170
BmiI GGNNCC 2 cut(s) 159, 171
BmrFI CCNGG 4 cut(s) 17, 173, 174, 370
BmsI GCATC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 288
BpuMI CCSGG 3 cut(s) 17, 173, 174
BsaBI GATNNNNATC 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 172, 368
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 23, 166, 167
Bse8I GATNNNNATC 1 cut(s) 61
BseBI CCWGG 1 cut(s) 370
BseDI CCNNGG 2 cut(s) 172, 368
BseGI GGATG 2 cut(s) 153, 323
BseJI GATNNNNATC 1 cut(s) 61
BseLI CCNNNNNNNGG 4 cut(s) 19, 23, 166, 167
BseSI GKGCMC 1 cut(s) 173
BseX3I CGGCCG 1 cut(s) 199
Bsh1236I CGCG 5 cut(s) 101, 192, 198, 283, 285
Bsh1285I CGRYCG 2 cut(s) 196, 202
BshFI GGCC 7 cut(s) 35, 86, 158, 171, 186, 201, 373
BsiEI CGRYCG 2 cut(s) 196, 202
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 2 cut(s) 172, 323
BsiSI CCGG 3 cut(s) 17, 173, 183
BsiWI CGTACG 1 cut(s) 48
BslFI GGGAC 2 cut(s) 351, 356
BslI CCNNNNNNNGG 4 cut(s) 19, 23, 166, 167
BsmFI GGGAC 2 cut(s) 351, 356
BsnI GGCC 7 cut(s) 35, 86, 158, 171, 186, 201, 373
BsoBI CYCGRG 2 cut(s) 172, 323
Bsp120I GGGCCC 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 173, 312
Bsp143I GATC 1 cut(s) 91
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 3 cut(s) 192, 198, 202
BspANI GGCC 7 cut(s) 35, 86, 158, 171, 186, 201, 373
BspFNI CGCG 5 cut(s) 101, 192, 198, 283, 285
BspLI GGNNCC 2 cut(s) 159, 171
BsrBI CCGCTC 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 172, 368
BssMI GATC 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 370
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 70, 106
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 153, 323
BstFNI CGCG 5 cut(s) 101, 192, 198, 283, 285
BstHHI GCGC 2 cut(s) 192, 285
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMCI CGRYCG 2 cut(s) 196, 202
BstMWI GCNNNNNNNGC 2 cut(s) 183, 198
BstNI CCWGG 1 cut(s) 370
BstSCI CCNGG 4 cut(s) 15, 171, 172, 368
BstSLI GKGCMC 1 cut(s) 173
BstUI CGCG 5 cut(s) 101, 192, 198, 283, 285
BstZI CGGCCG 1 cut(s) 199
BsuRI GGCC 7 cut(s) 35, 86, 158, 171, 186, 201, 373
BtsCI GGATG 2 cut(s) 153, 323
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 188
CciNI GCGGCCGC 1 cut(s) 199
CfoI GCGC 2 cut(s) 192, 285
Cfr13I GGNCC 3 cut(s) 157, 169, 170
Cfr9I CCCGGG 1 cut(s) 172
Csp6I GTAC 3 cut(s) 49, 67, 277
CviJI RGCY 9 cut(s) 35, 86, 158, 171, 177, 186, 201, 217, 373
CviKI_1 RGCY 9 cut(s) 35, 86, 158, 171, 177, 186, 201, 217, 373
CviQI GTAC 3 cut(s) 49, 67, 277
DdeI CTNAG 2 cut(s) 70, 106
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 199
EagI CGGCCG 1 cut(s) 199
EclXI CGGCCG 1 cut(s) 199
Eco147I AGGCCT 2 cut(s) 35, 86
Eco24I GRGCYC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 338
Eco52I CGGCCG 1 cut(s) 199
Eco88I CYCGRG 2 cut(s) 172, 323
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 368
EcoRV GATATC 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 173
FaiI YATR 2 cut(s) 90, 382
FaqI GGGAC 2 cut(s) 351, 356
Fnu4HI GCNGC 2 cut(s) 199, 202
FokI GGATG 2 cut(s) 160, 330
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 199, 202
GlaI GCGC 2 cut(s) 191, 284
GluI GCNGC 2 cut(s) 199, 202
HaeIII GGCC 7 cut(s) 35, 86, 158, 171, 186, 201, 373
HapII CCGG 3 cut(s) 17, 173, 183
HhaI GCGC 2 cut(s) 192, 285
Hin6I GCGC 2 cut(s) 190, 283
HinP1I GCGC 2 cut(s) 190, 283
HinfI GANTC 3 cut(s) 96, 229, 344
HpaII CCGG 3 cut(s) 17, 173, 183
HphI GGTGA 2 cut(s) 280, 368
Hpy188III TCNNGA 4 cut(s) 100, 130, 305, 341
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 17, 46, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 198
HpyF3I CTNAG 2 cut(s) 70, 106
HspAI GCGC 2 cut(s) 190, 283
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 5 cut(s) 30, 186, 196, 200, 355
LweI GCATC 1 cut(s) 308
MalI GATC 1 cut(s) 93
MbiI CCGCTC 1 cut(s) 204
MboI GATC 1 cut(s) 91
MboII GAAGA 1 cut(s) 299
MhlI GDGCHC 2 cut(s) 173, 312
MluCI AATT 1 cut(s) 238
MlyI GAGTC 2 cut(s) 105, 338
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 1 cut(s) 213
MspI CCGG 3 cut(s) 17, 173, 183
MspR9I CCNGG 4 cut(s) 17, 173, 174, 370
MvaI CCWGG 1 cut(s) 370
MvnI CGCG 5 cut(s) 101, 192, 198, 283, 285
MwoI GCNNNNNNNGC 2 cut(s) 183, 198
NciI CCSGG 3 cut(s) 17, 173, 174
NdeII GATC 1 cut(s) 91
NlaIV GGNNCC 2 cut(s) 159, 171
NotI GCGGCCGC 1 cut(s) 199
NruI TCGCGA 1 cut(s) 101
PceI AGGCCT 2 cut(s) 35, 86
PcsI WCGNNNNNNNCGW 2 cut(s) 272, 321
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 229
Pfl23II CGTACG 1 cut(s) 48
PfoI TCCNGGA 1 cut(s) 15
PkrI GCNGC 2 cut(s) 200, 203
PleI GAGTC 2 cut(s) 104, 338
PpsI GAGTC 2 cut(s) 104, 338
Psp6I CCWGG 1 cut(s) 368
PspGI CCWGG 1 cut(s) 368
PspLI CGTACG 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 159, 171
PspOMI GGGCCC 1 cut(s) 169
PspPI GGNCC 3 cut(s) 157, 169, 170
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 3 cut(s) 50, 68, 278
RsaNI GTAC 3 cut(s) 49, 67, 277
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 199, 202
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 3 cut(s) 157, 169, 170
SchI GAGTC 2 cut(s) 105, 338
ScrFI CCNGG 4 cut(s) 17, 173, 174, 370
SduI GDGCHC 2 cut(s) 173, 312
SetI ASST 4 cut(s) 15, 107, 114, 358
SfaNI GCATC 1 cut(s) 308
SmaI CCCGGG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
SrfI GCCCGGGC 1 cut(s) 174
Sse9I AATT 1 cut(s) 238
SseBI AGGCCT 2 cut(s) 35, 86
SsiI CCGC 3 cut(s) 192, 198, 202
StuI AGGCCT 2 cut(s) 35, 86
StyD4I CCNGG 4 cut(s) 15, 171, 172, 368
TaqI TCGA 2 cut(s) 94, 131
TasI AATT 1 cut(s) 238
TauI GCSGC 2 cut(s) 201, 204
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TspDTI ATGAA 3 cut(s) 135, 199, 269
TspGWI ACGGA 2 cut(s) 330, 353
TspMI CCCGGG 1 cut(s) 172
XagI CCTNNNNNAGG 1 cut(s) 17
XmaI CCCGGG 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.