Rroxscaffold_6G00392800

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000176
Physical Location & Seq
Reverse (-)
12532683 .. 12533168
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392800.1

Sequence Viewer

Length: 486 bp
ATGCACTTGCTCGGGATCAAGAGGGAGAAGATCCGGTCCATGTCCCTTACGCTCAAGAATTTCTCGGGAACCGTGACGAAGACCTTAGGATTGCTATTCTTACGAATTAAGGTTTGTCCGGCGAGAGGGGTGTATGCTTTCTTTGTAACGATTGTTATGCGGCCTATAGTGCTATTTTGGGCGGACCGGATCCACCGGAGTTATTGCGTACCATCGACACTTCATCGGGAGCTGGTTATGTGGAATAGAGAGACGGACACAACCGAGGTGATCAAAGCGGACCCTCGTCCATTCCCGGTCTCGGCGAACTACGTAGATGCCGAGTACTATTTGGAACCTATTACTCCATTACGGGTTAGTGGCATCGATGATAAAGGCTGCCCCACGGGGGTGACGGCCTACGAATTGGCACGGTGGGGGCTTACGCTCGCAAAAGAAGGCCTAGAGAGGCCCGGCCACGCTATGCCTAAATCCTTAAATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

161

Amino Acids

18.27

Weight (kDa)

9.37

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 160, 182, 278
AclWI GGATC 4 cut(s) 23, 25, 184, 197
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 2 cut(s) 210, 326
AfiI CCNNNNNNNGG 3 cut(s) 125, 301, 388
AleI CACNNNNGTG 1 cut(s) 389
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw26I GTCTC 2 cut(s) 245, 304
AlwI GGATC 4 cut(s) 23, 25, 184, 197
Ama87I CYCGRG 2 cut(s) 11, 64
AoxI GGCC 5 cut(s) 161, 396, 439, 449, 454
ApeKI GCWGC 1 cut(s) 378
ApoI RAATTY 1 cut(s) 58
AspS9I GGNCC 4 cut(s) 36, 184, 280, 450
AsuC2I CCSGG 2 cut(s) 296, 453
AsuHPI GGTGA 2 cut(s) 280, 403
AvaI CYCGRG 2 cut(s) 11, 64
AvaII GGWCC 3 cut(s) 36, 184, 280
AxyI CCTNAGG 1 cut(s) 85
BamHI GGATCC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 365
BccI CCATC 1 cut(s) 220
BceAI ACGGC 1 cut(s) 411
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BclI TGATCA 1 cut(s) 270
BcnI CCSGG 2 cut(s) 296, 453
BcoDI GTCTC 2 cut(s) 245, 304
BfaI CTAG 1 cut(s) 443
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 2 cut(s) 161, 379
BlsI GCNGC 2 cut(s) 162, 380
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 2 cut(s) 296, 453
Bme18I GGWCC 3 cut(s) 36, 184, 280
BmeT110I CYCGRG 2 cut(s) 11, 64
BmgT120I GGNCC 4 cut(s) 36, 184, 280, 450
BmiI GGNNCC 4 cut(s) 70, 191, 282, 336
BmrFI CCNGG 2 cut(s) 296, 453
BmsI GCATC 2 cut(s) 307, 372
BoxI GACNNNNGTC 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 2 cut(s) 296, 453
Bsa29I ATCGAT 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 264, 384
BsaWI WCCGGW 3 cut(s) 33, 186, 195
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 301, 388
Bse21I CCTNAGG 1 cut(s) 85
BseCI ATCGAT 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 264, 384
BseLI CCNNNNNNNGG 3 cut(s) 125, 301, 388
BseXI GCAGC 1 cut(s) 365
BshFI GGCC 5 cut(s) 163, 398, 441, 451, 456
BshVI ATCGAT 1 cut(s) 366
BsiHKCI CYCGRG 2 cut(s) 11, 64
BsiSI CCGG 6 cut(s) 34, 119, 187, 196, 296, 453
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 3 cut(s) 125, 301, 388
BsmAI GTCTC 2 cut(s) 245, 304
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 5 cut(s) 163, 398, 441, 451, 456
Bso31I GGTCTC 1 cut(s) 304
BsoBI CYCGRG 2 cut(s) 11, 64
Bsp143I GATC 4 cut(s) 15, 30, 189, 270
BspACI CCGC 3 cut(s) 160, 182, 278
BspANI GGCC 5 cut(s) 163, 398, 441, 451, 456
BspDI ATCGAT 1 cut(s) 366
BspLI GGNNCC 4 cut(s) 70, 191, 282, 336
BspPI GGATC 4 cut(s) 23, 25, 184, 197
BspTNI GGTCTC 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 264, 384
BssMI GATC 4 cut(s) 15, 30, 189, 270
Bst4CI ACNGT 2 cut(s) 73, 414
BstBAI YACGTR 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 1 cut(s) 85
BstDSI CCRYGG 1 cut(s) 384
BstKTI GATC 4 cut(s) 18, 33, 192, 273
BstMAI GTCTC 2 cut(s) 245, 304
BstMBI GATC 4 cut(s) 15, 30, 189, 270
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstPAI GACNNNNGTC 1 cut(s) 285
BstSCI CCNGG 2 cut(s) 294, 451
BstSFI CTRYAG 1 cut(s) 165
BstSNI TACGTA 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 365
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 2 cut(s) 30, 189
BstYI RGATCY 2 cut(s) 30, 189
Bsu15I ATCGAT 1 cut(s) 366
Bsu36I CCTNAGG 1 cut(s) 85
BsuRI GGCC 5 cut(s) 163, 398, 441, 451, 456
BsuTUI ATCGAT 1 cut(s) 366
BtgI CCRYGG 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 429
Cfr13I GGNCC 4 cut(s) 36, 184, 280, 450
ClaI ATCGAT 1 cut(s) 366
CpoI CGGWCCG 1 cut(s) 184
Csp6I GTAC 2 cut(s) 209, 325
CspI CGGWCCG 1 cut(s) 184
CviAII CATG 1 cut(s) 40
CviJI RGCY 8 cut(s) 163, 232, 378, 398, 421, 441, 451, 456
CviKI_1 RGCY 8 cut(s) 163, 232, 378, 398, 421, 441, 451, 456
CviQI GTAC 2 cut(s) 209, 325
DdeI CTNAG 1 cut(s) 85
DpnI GATC 4 cut(s) 17, 32, 191, 272
DpnII GATC 4 cut(s) 15, 30, 189, 270
EaeI YGGCCR 1 cut(s) 454
EciI GGCGGA 1 cut(s) 197
Eco105I TACGTA 1 cut(s) 313
Eco147I AGGCCT 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 304
Eco47I GGWCC 3 cut(s) 36, 184, 280
Eco81I CCTNAGG 1 cut(s) 85
Eco88I CYCGRG 2 cut(s) 11, 64
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 1 cut(s) 43
FaiI YATR 6 cut(s) 41, 135, 158, 167, 239, 464
FaqI GGGAC 1 cut(s) 28
FatI CATG 1 cut(s) 39
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 2 cut(s) 161, 379
Fsp4HI GCNGC 2 cut(s) 161, 379
FspBI CTAG 1 cut(s) 443
GluI GCNGC 2 cut(s) 161, 379
HaeIII GGCC 5 cut(s) 163, 398, 441, 451, 456
HapII CCGG 6 cut(s) 34, 119, 187, 196, 296, 453
Hin1II CATG 1 cut(s) 43
HpaII CCGG 6 cut(s) 34, 119, 187, 196, 296, 453
HphI GGTGA 2 cut(s) 280, 403
Hpy188III TCNNGA 5 cut(s) 13, 19, 55, 66, 227
HpyAV CCTTC 1 cut(s) 431
HpyCH4III ACNGT 2 cut(s) 73, 414
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 1 cut(s) 85
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 4 cut(s) 15, 30, 189, 270
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 7 cut(s) 47, 132, 200, 209, 218, 309, 466
Lsp1109I GCAGC 1 cut(s) 365
LweI GCATC 2 cut(s) 307, 372
MaeI CTAG 1 cut(s) 443
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 3 cut(s) 73, 145, 391
MalI GATC 4 cut(s) 17, 32, 191, 272
MboI GATC 4 cut(s) 15, 30, 189, 270
MboII GAAGA 2 cut(s) 40, 91
MflI RGATCY 2 cut(s) 30, 189
MluCI AATT 3 cut(s) 58, 105, 404
MnlI CCTC 5 cut(s) 15, 119, 259, 294, 441
MseI TTAA 3 cut(s) 108, 476, 484
MslI CAYNNNNRTG 1 cut(s) 389
MspI CCGG 6 cut(s) 34, 119, 187, 196, 296, 453
MspR9I CCNGG 2 cut(s) 296, 453
MwoI GCNNNNNNNGC 1 cut(s) 169
NciI CCSGG 2 cut(s) 296, 453
NdeII GATC 4 cut(s) 15, 30, 189, 270
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 4 cut(s) 70, 191, 282, 336
NmeAIII GCCGAG 2 cut(s) 281, 346
NmuCI GTSAC 2 cut(s) 73, 391
OliI CACNNNNGTG 1 cut(s) 389
PceI AGGCCT 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PkrI GCNGC 2 cut(s) 162, 380
Ppu21I YACGTR 1 cut(s) 313
PshAI GACNNNNGTC 1 cut(s) 285
PspN4I GGNNCC 4 cut(s) 70, 191, 282, 336
PspPI GGNCC 4 cut(s) 36, 184, 280, 450
PsuI RGATCY 2 cut(s) 30, 189
RsaI GTAC 2 cut(s) 210, 326
RsaNI GTAC 2 cut(s) 209, 325
RseI CAYNNNNRTG 1 cut(s) 389
Rsr2I CGGWCCG 1 cut(s) 184
RsrII CGGWCCG 1 cut(s) 184
SaqAI TTAA 3 cut(s) 108, 476, 484
SatI GCNGC 2 cut(s) 161, 379
Sau3AI GATC 4 cut(s) 15, 30, 189, 270
Sau96I GGNCC 4 cut(s) 36, 184, 280, 450
ScaI AGTACT 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 296, 453
SetI ASST 6 cut(s) 86, 114, 234, 270, 315, 340
SfaNI GCATC 2 cut(s) 307, 372
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 3 cut(s) 36, 184, 280
SmiMI CAYNNNNRTG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SnaBI TACGTA 1 cut(s) 313
Sse9I AATT 3 cut(s) 58, 105, 404
SseBI AGGCCT 1 cut(s) 441
SsiI CCGC 3 cut(s) 160, 182, 278
SspMI CTAG 1 cut(s) 443
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 2 cut(s) 294, 451
TaaI ACNGT 2 cut(s) 73, 414
TaiI ACGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 215, 366
TasI AATT 3 cut(s) 58, 105, 404
TatI WGTACW 1 cut(s) 324
TauI GCSGC 1 cut(s) 163
Tru1I TTAA 3 cut(s) 108, 476, 484
Tru9I TTAA 3 cut(s) 108, 476, 484
TseFI GTSAC 2 cut(s) 73, 391
TseI GCWGC 1 cut(s) 378
Tsp45I GTSAC 2 cut(s) 73, 391
TspDTI ATGAA 1 cut(s) 212
TspGWI ACGGA 1 cut(s) 269
VpaK11BI GGWCC 3 cut(s) 36, 184, 280
XapI RAATTY 1 cut(s) 58
XspI CTAG 1 cut(s) 443
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.