RchiOBHm_Chr6g0263211

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000176
Physical Location & Seq
Forward (+)
17986065 .. 17987159
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23607

Sequence Viewer

Length: 993 bp
ATGGTAGAAGGTGCTGCCACGAACAATGGTAAGCAAGACGATTATGGAGACGAGGGTGATGAGGAAGTCGATTATGGGGAAGAAGAGGAACAAGGTGACTATGACAATGAGAATGGACTCGATTACGACATTGGGGATGACACAGCTTTTGACATAGAAACCTTATCTCCATTTTATAAGGGCGAGGCCGCTTTTGGAAAAGGAGAAGGTAACACAATGGACATCAACATGGTTTATGTCCTACCTTCAGAACTCAAAGCTCAACCAGGTCAGTCAAATGAACTGATCGGTGACTTTGTTGCCGATCGACAACCTCGATTTGAGATTGATGAAGTCGATGCCCAATTGAAGGATGAAGAAGGCCGCGTGGTACTCACAAAACCAACGGCCAAAATGGCTCAACATTTGAAGCCGTTATACATCACGGCTTACATAGAGGGATATCCAATAACGAAAGTTTTGGTGGACAATGGTGCAGCAGTTAATGTGTTACCTACAGCCGTCATGAAGAAATTACGCAGGACTGAATCCGATTTGCTCCCTTCAGACATTACAGTGAGCAACTTCTCTGGAGGTAAGAGTAGGCCAAGAGGTATCCTCCCACTCGATGTCACAGTGGGGGAAAAGACAAACATGACGGCTTTCTTCGTGGTCGATTCATCTGCTCATTACAATGCATTGCTTGGCCGCGATTGGATTCACCAGAACATGTGTGTACCTTCTTCCCTGCATCAAGTTTTGATCTTCTGGCATGGCGACAAAATTGAGGTCATTCCAGCAGACAATAATCCATTTCAAGCATCCACCAATGTAGTAGAAGCAAGGTTTTATGAAGACGATATTGGTTATTTCACTTTCAGTGGAGGAGATAGCAAGGGCCGACCTACTCAAGTTACGGCCCAGAAAATTGTCAACCTAGGGAGTGAGGATGTTTTGCAAGATGCAGAGCGTCCAACCCTGGTTGACCTCTTCAAGGACAATATCAATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

330

Amino Acids

36.45

Weight (kDa)

4.34

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AccII CGCG 2 cut(s) 366, 690
AciI CCGC 3 cut(s) 189, 364, 688
AcoI YGGCCR 2 cut(s) 387, 685
AcuI CTGAAG 2 cut(s) 231, 528
AfaI GTAC 2 cut(s) 372, 717
AfiI CCNNNNNNNGG 2 cut(s) 349, 973
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 4 cut(s) 349, 409, 797, 973
AjnI CCWGG 2 cut(s) 265, 957
AjuI GAANNNNNNNTTGG 2 cut(s) 825, 857
AluBI AGCT 2 cut(s) 146, 260
AluI AGCT 2 cut(s) 146, 260
Alw26I GTCTC 1 cut(s) 42
AoxI GGCC 7 cut(s) 186, 361, 387, 584, 685, 877, 897
ApeKI GCWGC 2 cut(s) 14, 476
ArsI GACNNNNNNTTYG 4 cut(s) 131, 163, 753, 785
AspA2I CCTAGG 1 cut(s) 916
AspS9I GGNCC 2 cut(s) 877, 898
AsuHPI GGTGA 4 cut(s) 68, 107, 302, 692
AvrII CCTAGG 1 cut(s) 916
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BbsI GAAGAC 1 cut(s) 840
BbvI GCAGC 1 cut(s) 488
BceAI ACGGC 6 cut(s) 397, 402, 441, 485, 654, 912
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 2 cut(s) 267, 959
BciVI GTATCC 1 cut(s) 605
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 2 cut(s) 917, 991
BfmI CTRYAG 1 cut(s) 495
BfuI GTATCC 1 cut(s) 605
BglI GCCNNNNNGGC 1 cut(s) 395
BisI GCNGC 5 cut(s) 15, 189, 364, 477, 688
BlnI CCTAGG 1 cut(s) 916
BlsI GCNGC 5 cut(s) 16, 190, 365, 478, 689
Bme1390I CCNGG 2 cut(s) 267, 959
BmgT120I GGNCC 2 cut(s) 877, 898
BmrFI CCNGG 2 cut(s) 267, 959
BmsI GCATC 4 cut(s) 328, 739, 809, 931
BpiI GAAGAC 1 cut(s) 840
BplI GAGNNNNNCTC 2 cut(s) 582, 614
BpmI CTGGAG 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 873
BsaJI CCNNGG 2 cut(s) 916, 957
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 973
Bse3DI GCAATG 1 cut(s) 677
BseBI CCWGG 2 cut(s) 267, 959
BseDI CCNNGG 2 cut(s) 916, 957
BseGI GGATG 4 cut(s) 142, 358, 800, 934
BseLI CCNNNNNNNGG 2 cut(s) 349, 973
BseMI GCAATG 1 cut(s) 677
BseRI GAGGAG 1 cut(s) 879
BseXI GCAGC 1 cut(s) 488
BsgI GTGCAG 1 cut(s) 495
Bsh1236I CGCG 2 cut(s) 366, 690
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 7 cut(s) 188, 363, 389, 586, 687, 879, 899
BsiEI CGRYCG 1 cut(s) 307
BslI CCNNNNNNNGG 2 cut(s) 349, 973
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsnI GGCC 7 cut(s) 188, 363, 389, 586, 687, 879, 899
Bsp143I GATC 3 cut(s) 285, 304, 741
BspACI CCGC 3 cut(s) 189, 364, 688
BspANI GGCC 7 cut(s) 188, 363, 389, 586, 687, 879, 899
BspFNI CGCG 2 cut(s) 366, 690
BspHI TCATGA 1 cut(s) 504
BsrDI GCAATG 1 cut(s) 677
BssECI CCNNGG 2 cut(s) 916, 957
BssMI GATC 3 cut(s) 285, 304, 741
BssT1I CCWWGG 1 cut(s) 916
Bst2UI CCWGG 2 cut(s) 267, 959
Bst4CI ACNGT 2 cut(s) 556, 616
Bst6I CTCTTC 2 cut(s) 78, 974
BstENI CCTNNNNNAGG 1 cut(s) 971
BstF5I GGATG 4 cut(s) 142, 358, 800, 934
BstFNI CGCG 2 cut(s) 366, 690
BstKTI GATC 3 cut(s) 288, 307, 744
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 3 cut(s) 285, 304, 741
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 2 cut(s) 267, 959
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 2 cut(s) 265, 957
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 2 cut(s) 366, 690
BstV1I GCAGC 1 cut(s) 488
BstV2I GAAGAC 1 cut(s) 840
BsuI GTATCC 1 cut(s) 605
BsuRI GGCC 7 cut(s) 188, 363, 389, 586, 687, 879, 899
BtsCI GGATG 4 cut(s) 142, 358, 800, 934
BtsIMutI CAGTG 3 cut(s) 561, 621, 865
CciI TCATGA 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 877, 898
CseI GACGC 1 cut(s) 938
CsiI ACCWGGT 1 cut(s) 265
Csp6I GTAC 2 cut(s) 371, 716
CviAII CATG 5 cut(s) 229, 505, 634, 709, 752
CviQI GTAC 2 cut(s) 371, 716
DpnI GATC 3 cut(s) 287, 306, 743
DpnII GATC 3 cut(s) 285, 304, 741
EaeI YGGCCR 2 cut(s) 387, 685
Eam1104I CTCTTC 2 cut(s) 78, 974
EarI CTCTTC 2 cut(s) 78, 974
Eco130I CCWWGG 1 cut(s) 916
Eco32I GATATC 1 cut(s) 443
Eco57I CTGAAG 2 cut(s) 231, 528
EcoNI CCTNNNNNAGG 1 cut(s) 971
EcoRII CCWGG 2 cut(s) 265, 957
EcoRV GATATC 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 916
EcoT22I ATGCAT 1 cut(s) 679
ErhI CCWWGG 1 cut(s) 916
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 5 cut(s) 232, 508, 637, 712, 755
FatI CATG 5 cut(s) 228, 504, 633, 708, 751
Fnu4HI GCNGC 5 cut(s) 15, 189, 364, 477, 688
FokI GGATG 4 cut(s) 149, 365, 787, 941
Fsp4HI GCNGC 5 cut(s) 15, 189, 364, 477, 688
FspBI CTAG 2 cut(s) 917, 991
GluI GCNGC 5 cut(s) 15, 189, 364, 477, 688
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 7 cut(s) 188, 363, 389, 586, 687, 879, 899
HgaI GACGC 1 cut(s) 938
Hin1II CATG 5 cut(s) 232, 508, 637, 712, 755
HincII GTYRAC 2 cut(s) 913, 964
HindII GTYRAC 2 cut(s) 913, 964
HinfI GANTC 4 cut(s) 117, 527, 656, 697
HphI GGTGA 4 cut(s) 68, 107, 302, 692
Hpy166II GTNNAC 4 cut(s) 466, 716, 913, 964
Hpy188I TCNGA 3 cut(s) 250, 532, 547
Hpy188III TCNNGA 2 cut(s) 505, 570
Hpy8I GTNNAC 4 cut(s) 466, 716, 913, 964
HpyAV CCTTC 6 cut(s) 200, 255, 343, 353, 552, 729
HpyCH4III ACNGT 2 cut(s) 556, 616
HpyCH4V TGCA 5 cut(s) 476, 677, 730, 937, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
Hsp92II CATG 5 cut(s) 232, 508, 637, 712, 755
Kzo9I GATC 3 cut(s) 285, 304, 741
LmnI GCTCC 1 cut(s) 543
Lsp1109I GCAGC 1 cut(s) 488
LweI GCATC 4 cut(s) 328, 739, 809, 931
MabI ACCWGGT 1 cut(s) 265
MaeI CTAG 2 cut(s) 917, 991
MaeIII GTNAC 6 cut(s) 95, 209, 290, 489, 610, 892
MalI GATC 3 cut(s) 287, 306, 743
MboI GATC 3 cut(s) 285, 304, 741
MboII GAAGA 9 cut(s) 92, 95, 368, 520, 637, 714, 736, 845, 961
MfeI CAATTG 1 cut(s) 344
MluCI AATT 4 cut(s) 344, 512, 762, 906
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 977
Mph1103I ATGCAT 1 cut(s) 679
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 3 cut(s) 227, 554, 672
MspR9I CCNGG 2 cut(s) 267, 959
MunI CAATTG 1 cut(s) 344
MvaI CCWGG 2 cut(s) 267, 959
MvnI CGCG 2 cut(s) 366, 690
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeII GATC 3 cut(s) 285, 304, 741
NlaIII CATG 5 cut(s) 232, 508, 637, 712, 755
NmuCI GTSAC 3 cut(s) 95, 290, 610
NsiI ATGCAT 1 cut(s) 679
NspI RCATGY 1 cut(s) 712
PagI TCATGA 1 cut(s) 504
PciI ACATGT 1 cut(s) 708
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PfeI GAWTC 3 cut(s) 527, 656, 697
PkrI GCNGC 5 cut(s) 16, 190, 365, 478, 689
Ple19I CGATCG 1 cut(s) 307
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PscI ACATGT 1 cut(s) 708
PsiI TTATAA 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 265, 957
PspGI CCWGG 2 cut(s) 265, 957
PspPI GGNCC 2 cut(s) 877, 898
PvuI CGATCG 1 cut(s) 307
RsaI GTAC 2 cut(s) 372, 717
RsaNI GTAC 2 cut(s) 371, 716
RseI CAYNNNNRTG 3 cut(s) 227, 554, 672
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 5 cut(s) 15, 189, 364, 477, 688
Sau3AI GATC 3 cut(s) 285, 304, 741
Sau96I GGNCC 2 cut(s) 877, 898
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 2 cut(s) 267, 959
SexAI ACCWGGT 1 cut(s) 265
SfaNI GCATC 4 cut(s) 328, 739, 809, 931
SfcI CTRYAG 1 cut(s) 495
SmiMI CAYNNNNRTG 3 cut(s) 227, 554, 672
SmlI CTYRAG 1 cut(s) 888
SmoI CTYRAG 1 cut(s) 888
Sse9I AATT 4 cut(s) 344, 512, 762, 906
SsiI CCGC 3 cut(s) 189, 364, 688
SspMI CTAG 2 cut(s) 917, 991
StyD4I CCNGG 2 cut(s) 265, 957
StyI CCWWGG 1 cut(s) 916
TaaI ACNGT 2 cut(s) 556, 616
TaqI TCGA 7 cut(s) 69, 120, 307, 316, 336, 606, 654
TasI AATT 4 cut(s) 344, 512, 762, 906
TauI GCSGC 3 cut(s) 191, 366, 690
TfiI GAWTC 3 cut(s) 527, 656, 697
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 3 cut(s) 561, 621, 865
TseFI GTSAC 3 cut(s) 95, 290, 610
TseI GCWGC 2 cut(s) 14, 476
Tsp45I GTSAC 3 cut(s) 95, 290, 610
TspDTI ATGAA 6 cut(s) 294, 345, 369, 521, 648, 846
TspRI CASTG 3 cut(s) 561, 621, 865
XagI CCTNNNNNAGG 1 cut(s) 971
XceI RCATGY 1 cut(s) 712
XmaJI CCTAGG 1 cut(s) 916
XspI CTAG 2 cut(s) 917, 991
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.