Rroxscaffold_3G00218240

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000176
Physical Location & Seq
Reverse (-)
336518 .. 338635
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00218240.1

Sequence Viewer

Length: 1014 bp
ATGCAAAGGGAAGTGGCGCCGCAAGGCGCAAGGGTCGAAGGGCAGGAAATCAAACGGTCGACCGAAGCCAATGATAGAGAAGCCCCCATAATTAGAGAAGACTTTCATAAGGATTCGGGAGAACCTATGGAACTTGAGACCATCGGTGATCATTTTGAAAATGTCCTTAGCTTCCCAAAGCTACCCCATCCGCCCGACAACGGGGCCATTGAAGAATTGAAGAAAGAGCAAGCCGCTCTCGGCAAGGTGAAGGATGAGGAAATGGTAGAAGGTGTTGCCATGAACGATGGTAAGCAAGACAATTTTGAAGATGAGGGTGGTGATGAGGAAGTCGATTATATGGGAAGAAGAGGAACAAGGGTGAGGCCGCCTTTGGAAAAGGAGAAGGTAATACAATGGACATCAACATGGTTTATGTCCTACCTTCCGAACTCAAAGCTCAACCAGGATGAAGAAAGGCCGCGTGGTACTTATAAAACCAACGGCCAAAATGGCTCAACATTTGAAGCCATTATACATCACGGCTTACATAGAGGGTTACCCAATAACAAAAGTTCTAGTAGACAATGGTGCGAAGTTAATGTGTTACCTACGGCCGTTATGAAGAAATTACGCAACCGAATCCGATTTGCTACCTTCGACATCACAAAGAGCAACTTCTCGGGAGGTAAGAGCGAGCCAAGAGGTATCCTCCCACTCGATGTAACCGTGGGGGAAAAGATAAACATGACGGCTTTCTTCGTAGTCGATTCATCCGCTCATTACAATGCATTGCTTGGCCGCGATTGGATTCACCGTAACTTGTTGTGTGTACCTTCTTCCCCGCATCAAGTTTTGATCTTCTCGGCATGGAGACAAAATCGAGGTCATTCCACAGACAATAACCCCATTTCGGCATCCACCAATGTTGTGGAAGCAAGGTTTTACGAGGATGATATTGGTTATTTCACTTTCGGTGGAAGAGATAGCAAGGGCCGACCTACTCAAGTTACGGCCAGAGAATTGTCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

337

Amino Acids

38.09

Weight (kDa)

5.87

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
AccB1I GGYRCC 1 cut(s) 16
AccBSI CCGCTC 2 cut(s) 236, 758
AccI GTMKAC 2 cut(s) 59, 562
AccII CGCG 2 cut(s) 463, 783
AciI CCGC 8 cut(s) 20, 191, 234, 368, 461, 756, 781, 824
AcoI YGGCCR 4 cut(s) 484, 594, 778, 993
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 2 cut(s) 469, 813
AfiI CCNNNNNNNGG 3 cut(s) 200, 201, 892
AgsI TTSAA 5 cut(s) 158, 212, 220, 308, 506
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 3 cut(s) 171, 181, 439
AluI AGCT 3 cut(s) 171, 181, 439
Alw26I GTCTC 2 cut(s) 131, 847
Ama87I CYCGRG 1 cut(s) 661
AoxI GGCC 8 cut(s) 204, 365, 458, 484, 594, 778, 973, 993
ArsI GACNNNNNNTTYG 2 cut(s) 850, 882
Asp700I GAANNNNTTC 1 cut(s) 102
AspLEI GCGC 2 cut(s) 19, 29
AspS9I GGNCC 2 cut(s) 204, 973
AsuHPI GGTGA 5 cut(s) 158, 259, 332, 373, 785
AvaI CYCGRG 1 cut(s) 661
BanI GGYRCC 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 498, 530
BbsI GAAGAC 1 cut(s) 105
BccI CCATC 3 cut(s) 149, 195, 281
BceAI ACGGC 6 cut(s) 499, 538, 581, 609, 747, 1008
BciT130I CCWGG 1 cut(s) 446
BciVI GTATCC 1 cut(s) 698
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 131, 847
BfaI CTAG 2 cut(s) 558, 1012
BfoI RGCGCY 1 cut(s) 20
BfuI GTATCC 1 cut(s) 698
BglI GCCNNNNNGGC 1 cut(s) 492
BisI GCNGC 5 cut(s) 20, 234, 368, 461, 781
BlsI GCNGC 5 cut(s) 21, 235, 369, 462, 782
Bme1390I CCNGG 1 cut(s) 446
BmeT110I CYCGRG 1 cut(s) 661
BmgT120I GGNCC 2 cut(s) 204, 973
BmiI GGNNCC 2 cut(s) 18, 205
BmrFI CCNGG 1 cut(s) 446
BmsI GCATC 2 cut(s) 835, 905
BpiI GAAGAC 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 675, 707
Bpu10I CCTNAGC 1 cut(s) 167
BpuEI CTTGAG 2 cut(s) 155, 969
BsaHI GRCGYC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 708
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 201, 892
Bse3DI GCAATG 1 cut(s) 770
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 708
BseGI GGATG 6 cut(s) 187, 259, 454, 752, 896, 937
BseLI CCNNNNNNNGG 3 cut(s) 200, 201, 892
BseMI GCAATG 1 cut(s) 770
BseX3I CGGCCG 1 cut(s) 594
Bsh1236I CGCG 2 cut(s) 463, 783
Bsh1285I CGRYCG 3 cut(s) 59, 63, 597
BshFI GGCC 8 cut(s) 206, 367, 460, 486, 596, 780, 975, 995
BshNI GGYRCC 1 cut(s) 16
BsiEI CGRYCG 3 cut(s) 59, 63, 597
BsiHKCI CYCGRG 1 cut(s) 661
BslI CCNNNNNNNGG 3 cut(s) 200, 201, 892
BsmAI GTCTC 2 cut(s) 131, 847
BsnI GGCC 8 cut(s) 206, 367, 460, 486, 596, 780, 975, 995
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 661
Bsp143I GATC 2 cut(s) 148, 837
BspACI CCGC 8 cut(s) 20, 191, 234, 368, 461, 756, 781, 824
BspANI GGCC 8 cut(s) 206, 367, 460, 486, 596, 780, 975, 995
BspFNI CGCG 2 cut(s) 463, 783
BspLI GGNNCC 2 cut(s) 18, 205
BspT107I GGYRCC 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 131
BsrBI CCGCTC 2 cut(s) 236, 758
BsrDI GCAATG 1 cut(s) 770
BssECI CCNNGG 1 cut(s) 708
BssMI GATC 2 cut(s) 148, 837
BssNI GRCGYC 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 3 cut(s) 57, 709, 797
Bst6I CTCTTC 2 cut(s) 343, 955
BstACI GRCGYC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 231, 677
BstDEI CTNAG 1 cut(s) 167
BstDSI CCRYGG 1 cut(s) 708
BstEII GGTNACC 1 cut(s) 537
BstF5I GGATG 6 cut(s) 187, 259, 454, 752, 896, 937
BstFNI CGCG 2 cut(s) 463, 783
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 2 cut(s) 19, 29
BstKTI GATC 2 cut(s) 151, 840
BstMAI GTCTC 2 cut(s) 131, 847
BstMBI GATC 2 cut(s) 148, 837
BstMCI CGRYCG 3 cut(s) 59, 63, 597
BstMWI GCNNNNNNNGC 1 cut(s) 492
BstNI CCWGG 1 cut(s) 446
BstPI GGTNACC 1 cut(s) 537
BstSCI CCNGG 1 cut(s) 444
BstUI CGCG 2 cut(s) 463, 783
BstV2I GAAGAC 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 910
BstZI CGGCCG 1 cut(s) 594
BsuI GTATCC 1 cut(s) 698
BsuRI GGCC 8 cut(s) 206, 367, 460, 486, 596, 780, 975, 995
BtgI CCRYGG 1 cut(s) 708
BtsCI GGATG 6 cut(s) 187, 259, 454, 752, 896, 937
Cac8I GCNNGC 2 cut(s) 231, 677
CfoI GCGC 2 cut(s) 19, 29
Cfr13I GGNCC 2 cut(s) 204, 973
Csp6I GTAC 2 cut(s) 468, 812
CspCI CAANNNNNGTGG 2 cut(s) 889, 924
CviAII CATG 4 cut(s) 280, 408, 727, 849
CviQI GTAC 2 cut(s) 468, 812
DdeI CTNAG 1 cut(s) 167
DinI GGCGCC 1 cut(s) 18
DpnI GATC 2 cut(s) 150, 839
DpnII GATC 2 cut(s) 148, 837
EaeI YGGCCR 4 cut(s) 484, 594, 778, 993
EagI CGGCCG 1 cut(s) 594
Eam1104I CTCTTC 2 cut(s) 343, 955
EarI CTCTTC 2 cut(s) 343, 955
EciI GGCGGA 1 cut(s) 180
EclXI CGGCCG 1 cut(s) 594
Eco31I GGTCTC 1 cut(s) 131
Eco52I CGGCCG 1 cut(s) 594
Eco88I CYCGRG 1 cut(s) 661
Eco91I GGTNACC 1 cut(s) 537
EcoO65I GGTNACC 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 444
EcoT22I ATGCAT 1 cut(s) 772
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
FaeI CATG 4 cut(s) 283, 411, 730, 852
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FatI CATG 4 cut(s) 279, 407, 726, 848
FauI CCCGC 1 cut(s) 831
FbaI TGATCA 1 cut(s) 148
FblI GTMKAC 2 cut(s) 59, 562
Fnu4HI GCNGC 5 cut(s) 20, 234, 368, 461, 781
FokI GGATG 6 cut(s) 174, 266, 461, 739, 883, 944
Fsp4HI GCNGC 5 cut(s) 20, 234, 368, 461, 781
FspBI CTAG 2 cut(s) 558, 1012
GlaI GCGC 2 cut(s) 18, 28
GluI GCNGC 5 cut(s) 20, 234, 368, 461, 781
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 8 cut(s) 206, 367, 460, 486, 596, 780, 975, 995
HhaI GCGC 2 cut(s) 19, 29
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 4 cut(s) 283, 411, 730, 852
Hin6I GCGC 2 cut(s) 17, 27
HinP1I GCGC 2 cut(s) 17, 27
HincII GTYRAC 2 cut(s) 60, 1008
HindII GTYRAC 2 cut(s) 60, 1008
HinfI GANTC 4 cut(s) 113, 621, 749, 790
HphI GGTGA 5 cut(s) 158, 259, 332, 373, 785
Hpy166II GTNNAC 4 cut(s) 60, 563, 812, 1008
Hpy188I TCNGA 2 cut(s) 429, 626
Hpy188III TCNNGA 2 cut(s) 117, 663
Hpy8I GTNNAC 4 cut(s) 60, 563, 812, 1008
HpyAV CCTTC 7 cut(s) 32, 244, 263, 379, 434, 646, 825
HpyCH4III ACNGT 3 cut(s) 57, 709, 797
HpyCH4V TGCA 2 cut(s) 4, 770
HpyF10VI GCNNNNNNNGC 1 cut(s) 492
HpyF3I CTNAG 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 4 cut(s) 283, 411, 730, 852
HspAI GCGC 2 cut(s) 17, 27
KasI GGCGCC 1 cut(s) 16
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 2 cut(s) 148, 837
LpnPI CCDG 4 cut(s) 29, 431, 458, 1009
LweI GCATC 2 cut(s) 835, 905
MaeI CTAG 2 cut(s) 558, 1012
MaeIII GTNAC 5 cut(s) 537, 585, 703, 797, 988
MalI GATC 2 cut(s) 150, 839
MbiI CCGCTC 2 cut(s) 236, 758
MboI GATC 2 cut(s) 148, 837
MluCI AATT 5 cut(s) 90, 215, 301, 608, 1001
Mly113I GGCGCC 1 cut(s) 17
Mph1103I ATGCAT 1 cut(s) 772
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 1 cut(s) 579
MslI CAYNNNNRTG 2 cut(s) 406, 765
MspR9I CCNGG 1 cut(s) 446
MvaI CCWGG 1 cut(s) 446
MvnI CGCG 2 cut(s) 463, 783
MwoI GCNNNNNNNGC 1 cut(s) 492
NarI GGCGCC 1 cut(s) 17
NdeII GATC 2 cut(s) 148, 837
NlaIII CATG 4 cut(s) 283, 411, 730, 852
NlaIV GGNNCC 2 cut(s) 18, 205
NmeAIII GCCGAG 2 cut(s) 219, 824
NsiI ATGCAT 1 cut(s) 772
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 4 cut(s) 113, 621, 749, 790
PkrI GCNGC 5 cut(s) 21, 235, 369, 462, 782
PluTI GGCGCC 1 cut(s) 20
PsiI TTATAA 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 444
PspEI GGTNACC 1 cut(s) 537
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 18, 205
PspPI GGNCC 2 cut(s) 204, 973
RsaI GTAC 2 cut(s) 469, 813
RsaNI GTAC 2 cut(s) 468, 812
RseI CAYNNNNRTG 2 cut(s) 406, 765
SalI GTCGAC 1 cut(s) 58
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 5 cut(s) 20, 234, 368, 461, 781
Sau3AI GATC 2 cut(s) 148, 837
Sau96I GGNCC 2 cut(s) 204, 973
ScrFI CCNGG 1 cut(s) 446
SfaNI GCATC 2 cut(s) 835, 905
SfoI GGCGCC 1 cut(s) 18
SmiMI CAYNNNNRTG 2 cut(s) 406, 765
SmlI CTYRAG 2 cut(s) 134, 984
SmoI CTYRAG 2 cut(s) 134, 984
Sse9I AATT 5 cut(s) 90, 215, 301, 608, 1001
SsiI CCGC 8 cut(s) 20, 191, 234, 368, 461, 756, 781, 824
SspDI GGCGCC 1 cut(s) 16
SspMI CTAG 2 cut(s) 558, 1012
StyD4I CCNGG 1 cut(s) 444
TaaI ACNGT 3 cut(s) 57, 709, 797
TaqI TCGA 7 cut(s) 36, 59, 333, 639, 699, 747, 862
TaqII GACCGA 1 cut(s) 77
TasI AATT 5 cut(s) 90, 215, 301, 608, 1001
TauI GCSGC 5 cut(s) 22, 236, 370, 463, 783
TfiI GAWTC 4 cut(s) 113, 621, 749, 790
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TspDTI ATGAA 5 cut(s) 95, 296, 465, 617, 741
XcmI CCANNNNNNNNNTGG 1 cut(s) 907
XmiI GTMKAC 2 cut(s) 59, 562
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 2 cut(s) 558, 1012
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.