Rmu_sc0003936.1_g000019

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003936.1
OG0000176
Physical Location & Seq
Forward (+)
79717 .. 80275
559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003936.1_g000019.1.cds

Sequence Viewer

Length: 483 bp
atggtggaaaaagaggcttatgatcgtatcgcgaccttagaggtcgttaatgaagaactttctgacccgggggacgaagaggaagtcactattcaacttacccaggcagtgctggatgatacacctcctaaagccccggcagcgctggatgatacacctcctaaagttagagaccctactgagagggttaacctgggcacagtggacgagcctatggaggtatctatcagcgcttatctagagtctagcgagaaacagaggctcactgaattactattagaatttaaagactgctttgcagagaaatatgaagacatgcccggcctgtcaccagatttggtatgtcatcaactaccaactcttcctgacatgaggcccgtcaagcaggaacctcgacgaatgaattcggaaacccagattctcgtgaaggaggaggtagaaaaaaatacacaagtcgggtattataagggtcgccaagtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

160

Amino Acids

18.16

Weight (kDa)

4.39

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AccII CGCG 1 cut(s) 32
AcsI RAATTY 2 cut(s) 281, 403
AfeI AGCGCT 2 cut(s) 144, 232
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 2 cut(s) 102, 192
Alw26I GTCTC 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 67
Aor51HI AGCGCT 2 cut(s) 144, 232
AoxI GGCC 2 cut(s) 322, 374
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 2 cut(s) 281, 403
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
Asp700I GAANNNNTTC 1 cut(s) 403
AspLEI GCGC 2 cut(s) 145, 233
AspS9I GGNCC 1 cut(s) 375
AsuC2I CCSGG 4 cut(s) 68, 69, 137, 321
AsuHPI GGTGA 1 cut(s) 321
AvaI CYCGRG 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 200
BauI CACGAG 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 152
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 2 cut(s) 104, 194
BcnI CCSGG 4 cut(s) 68, 69, 137, 321
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 2 cut(s) 239, 246
BfoI RGCGCY 2 cut(s) 146, 234
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 6 cut(s) 68, 69, 104, 137, 194, 321
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 375
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 6 cut(s) 68, 69, 104, 137, 194, 321
BpiI GAAGAC 1 cut(s) 318
BpuMI CCSGG 4 cut(s) 68, 69, 137, 321
BsaI GGTCTC 1 cut(s) 165
BsaJI CCNNGG 5 cut(s) 67, 68, 102, 135, 193
BseBI CCWGG 2 cut(s) 104, 194
BseDI CCNNGG 5 cut(s) 67, 68, 102, 135, 193
BseGI GGATG 2 cut(s) 121, 154
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 1 cut(s) 200
BseXI GCAGC 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 2 cut(s) 324, 376
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 3 cut(s) 68, 137, 321
BslFI GGGAC 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 2 cut(s) 324, 376
Bso31I GGTCTC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 22
Bsp68I TCGCGA 1 cut(s) 32
BspANI GGCC 2 cut(s) 324, 376
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 390
BspTNI GGTCTC 1 cut(s) 165
BssECI CCNNGG 5 cut(s) 67, 68, 102, 135, 193
BssMI GATC 1 cut(s) 22
BssSI CACGAG 1 cut(s) 422
Bst2BI CACGAG 1 cut(s) 422
Bst2UI CCWGG 2 cut(s) 104, 194
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 2 cut(s) 72, 366
BstDEI CTNAG 2 cut(s) 37, 180
BstF5I GGATG 2 cut(s) 121, 154
BstFNI CGCG 1 cut(s) 32
BstH2I RGCGCY 2 cut(s) 146, 234
BstHHI GCGC 2 cut(s) 145, 233
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 140, 382
BstNI CCWGG 2 cut(s) 104, 194
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 6 cut(s) 66, 67, 102, 135, 192, 319
BstSLI GKGCMC 1 cut(s) 200
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 318
BsuRI GGCC 2 cut(s) 324, 376
BtsCI GGATG 2 cut(s) 121, 154
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 3 cut(s) 114, 207, 264
BtuMI TCGCGA 1 cut(s) 32
CfoI GCGC 2 cut(s) 145, 233
Cfr13I GGNCC 1 cut(s) 375
Cfr9I CCCGGG 1 cut(s) 67
CviAII CATG 2 cut(s) 316, 370
CviJI RGCY 6 cut(s) 17, 134, 211, 262, 324, 376
CviKI_1 RGCY 6 cut(s) 17, 134, 211, 262, 324, 376
DdeI CTNAG 2 cut(s) 37, 180
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
DraI TTTAAA 1 cut(s) 286
Eam1104I CTCTTC 2 cut(s) 72, 366
EarI CTCTTC 2 cut(s) 72, 366
Eco31I GGTCTC 1 cut(s) 165
Eco47III AGCGCT 2 cut(s) 144, 232
Eco88I CYCGRG 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 102, 192
FaeI CATG 2 cut(s) 319, 373
FaiI YATR 8 cut(s) 21, 215, 309, 317, 343, 371, 465, 481
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 315, 369
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 2 cut(s) 128, 161
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 2 cut(s) 239, 246
GlaI GCGC 2 cut(s) 144, 232
GluI GCNGC 1 cut(s) 141
HaeII RGCGCY 2 cut(s) 146, 234
HaeIII GGCC 2 cut(s) 324, 376
HapII CCGG 3 cut(s) 68, 137, 321
HhaI GCGC 2 cut(s) 145, 233
Hin1II CATG 2 cut(s) 319, 373
Hin6I GCGC 2 cut(s) 143, 231
HinP1I GCGC 2 cut(s) 143, 231
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 2 cut(s) 242, 418
HpaI GTTAAC 1 cut(s) 190
HpaII CCGG 3 cut(s) 68, 137, 321
HphI GGTGA 1 cut(s) 321
Hpy166II GTNNAC 2 cut(s) 190, 205
Hpy188I TCNGA 2 cut(s) 64, 409
Hpy188III TCNNGA 4 cut(s) 31, 239, 365, 424
Hpy8I GTNNAC 2 cut(s) 190, 205
Hpy99I CGWCG 1 cut(s) 399
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 382
HpyF3I CTNAG 2 cut(s) 37, 180
Hsp92II CATG 2 cut(s) 319, 373
HspAI GCGC 2 cut(s) 143, 231
KspAI GTTAAC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 152
MaeI CTAG 2 cut(s) 239, 246
MaeIII GTNAC 2 cut(s) 85, 327
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 4 cut(s) 65, 89, 323, 353
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 3 cut(s) 269, 281, 403
MlyI GAGTC 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 403
MseI TTAA 3 cut(s) 48, 189, 285
MspI CCGG 3 cut(s) 68, 137, 321
MspR9I CCNGG 6 cut(s) 68, 69, 104, 137, 194, 321
MvaI CCWGG 2 cut(s) 104, 194
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 140, 382
NciI CCSGG 4 cut(s) 68, 69, 137, 321
NdeII GATC 1 cut(s) 22
NlaIII CATG 2 cut(s) 319, 373
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 2 cut(s) 85, 327
NruI TCGCGA 1 cut(s) 32
NspI RCATGY 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 403
PfeI GAWTC 1 cut(s) 418
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PsiI TTATAA 1 cut(s) 465
Psp6I CCWGG 2 cut(s) 102, 192
PspGI CCWGG 2 cut(s) 102, 192
PspN4I GGNNCC 1 cut(s) 390
PspPI GGNCC 1 cut(s) 375
RruI TCGCGA 1 cut(s) 32
SaqAI TTAA 3 cut(s) 48, 189, 285
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 375
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 6 cut(s) 68, 69, 104, 137, 194, 321
SduI GDGCHC 1 cut(s) 200
SetI ASST 8 cut(s) 38, 45, 127, 160, 195, 222, 394, 438
SmaI CCCGGG 1 cut(s) 69
Sse9I AATT 3 cut(s) 269, 281, 403
SspMI CTAG 2 cut(s) 239, 246
StyD4I CCNGG 6 cut(s) 66, 67, 102, 135, 192, 319
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 394
TasI AATT 3 cut(s) 269, 281, 403
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 3 cut(s) 48, 189, 285
Tru9I TTAA 3 cut(s) 48, 189, 285
TscAI CASTG 3 cut(s) 114, 207, 271
TseFI GTSAC 2 cut(s) 85, 327
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 2 cut(s) 85, 327
TspDTI ATGAA 3 cut(s) 66, 324, 416
TspMI CCCGGG 1 cut(s) 67
TspRI CASTG 3 cut(s) 114, 207, 271
XapI RAATTY 2 cut(s) 281, 403
XbaI TCTAGA 1 cut(s) 238
XceI RCATGY 1 cut(s) 319
XmaI CCCGGG 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 403
XspI CTAG 2 cut(s) 239, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.