FvH4_2g23662

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000176
Physical Location & Seq
Reverse (-)
19364706 .. 19366084
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23662.t1

Sequence Viewer

Length: 675 bp
ATGGAATATGTAGATGAAGTGGTGGATTATTCCGATATCAAGGAGGAAGTTATTCACTTAGCTCCCGCCGCCTTGGACGACACACCACCTCAAGTCCGCGACCACATTTCACAAGTTGACGTAGGGACTGCAGAAAAGCCCTTACTTATTTCTATCAGTGCTAAGTTGGCGGAGGACGAAAAGGAAACCCTTCTTGCCCTGTTATGCGAGTACAGGGATTGCTTCGCCGACAAATACGAAGACATGCCCGGCTTGTCCCCGGACTTGGTCTGCCACCGGTTACCAACTTATCCCGACCGACGTCCAGTACGGCAGGACGGCCGATTCATGCGAACTGAGACTCAGATCGTAGTCAAGGAAGAGATCGAAAGCATGCACCGATCGGGCATCATTCGCGTGGCAAAGTATAACGAGTGGCTGTCCAATGTTGTCCCCATCCCCAAGAAAAATGGCAAGATGCGCGTCTGTGTTGATTACCGCGACCTAAACAACGCAACACCGAAGGATATATACCCCATGCCTGTGGCTGACCTACTCATTGATGCTGTCGCGGGGCACGAGGTGTTATCCTTTATGGATGGAACGGCCGGATACCATCAGATTCCCGTCGCTGAGGAAGATCGACACAAGACCGCTTTCCGCTGCCCTGGTTTTGCCGGCGCGTTCGAGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

225

Amino Acids

25.33

Weight (kDa)

4.9

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 146 - 216 2.9e-10 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 304
AccII CGCG 6 cut(s) 99, 396, 462, 480, 551, 662
AciI CCGC 8 cut(s) 66, 69, 97, 170, 478, 551, 633, 640
AcoI YGGCCR 2 cut(s) 319, 585
AcyI GRCGYC 1 cut(s) 301
AdeI CACNNNGTG 1 cut(s) 562
AfaI GTAC 2 cut(s) 212, 309
AfiI CCNNNNNNNGG 1 cut(s) 265
AgeI ACCGGT 1 cut(s) 276
AjnI CCWGG 1 cut(s) 646
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 332
AoxI GGCC 2 cut(s) 319, 585
ApeKI GCWGC 1 cut(s) 642
AsiGI ACCGGT 1 cut(s) 276
Asp700I GAANNNNTTC 2 cut(s) 51, 189
AspLEI GCGC 2 cut(s) 462, 662
AsuC2I CCSGG 2 cut(s) 249, 260
BaeGI GKGCMC 1 cut(s) 558
BarI GAAGNNNNNNTAC 2 cut(s) 494, 526
BauI CACGAG 1 cut(s) 557
BbsI GAAGAC 1 cut(s) 246
BbvCI CCTCAGC 1 cut(s) 612
BbvI GCAGC 1 cut(s) 629
BccI CCATC 3 cut(s) 443, 572, 603
BceAI ACGGC 3 cut(s) 326, 334, 600
BciT130I CCWGG 1 cut(s) 648
BciVI GTATCC 1 cut(s) 584
BcnI CCSGG 2 cut(s) 249, 260
BcoDI GTCTC 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 129
BfuI GTATCC 1 cut(s) 584
BisI GCNGC 2 cut(s) 69, 643
BlsI GCNGC 2 cut(s) 70, 644
Bme1390I CCNGG 3 cut(s) 249, 260, 648
BmrFI CCNGG 3 cut(s) 249, 260, 648
BmsI GCATC 3 cut(s) 396, 447, 532
BoxI GACNNNNGTC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 75
BpuMI CCSGG 2 cut(s) 249, 260
BsaHI GRCGYC 1 cut(s) 301
BsaJI CCNNGG 3 cut(s) 72, 258, 646
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse118I RCCGGY 2 cut(s) 276, 656
Bse1I ACTGG 1 cut(s) 305
BseBI CCWGG 1 cut(s) 648
BseDI CCNNGG 3 cut(s) 72, 258, 646
BseGI GGATG 2 cut(s) 435, 583
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMII CTCAG 3 cut(s) 327, 356, 603
BseNI ACTGG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 558
BseX3I CGGCCG 2 cut(s) 319, 585
BseXI GCAGC 1 cut(s) 629
Bsh1236I CGCG 6 cut(s) 99, 396, 462, 480, 551, 662
Bsh1285I CGRYCG 4 cut(s) 298, 322, 383, 588
BshFI GGCC 2 cut(s) 321, 587
BshTI ACCGGT 1 cut(s) 276
BsiEI CGRYCG 4 cut(s) 298, 322, 383, 588
BsiSI CCGG 5 cut(s) 249, 260, 277, 588, 657
BslFI GGGAC 3 cut(s) 139, 241, 416
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 3 cut(s) 139, 241, 416
BsnI GGCC 2 cut(s) 321, 587
Bsp1286I GDGCHC 1 cut(s) 558
Bsp143I GATC 4 cut(s) 345, 363, 380, 619
BspACI CCGC 8 cut(s) 66, 69, 97, 170, 478, 551, 633, 640
BspANI GGCC 2 cut(s) 321, 587
BspCNI CTCAG 3 cut(s) 328, 355, 604
BspFNI CGCG 6 cut(s) 99, 396, 462, 480, 551, 662
BspMAI CTGCAG 1 cut(s) 133
BsrFI RCCGGY 2 cut(s) 276, 656
BsrI ACTGG 1 cut(s) 305
BssAI RCCGGY 2 cut(s) 276, 656
BssECI CCNNGG 3 cut(s) 72, 258, 646
BssMI GATC 4 cut(s) 345, 363, 380, 619
BssNI GRCGYC 1 cut(s) 301
BssSI CACGAG 1 cut(s) 557
BssT1I CCWWGG 1 cut(s) 72
Bst2BI CACGAG 1 cut(s) 557
Bst2UI CCWGG 1 cut(s) 648
Bst6I CTCTTC 1 cut(s) 354
BstACI GRCGYC 1 cut(s) 301
BstC8I GCNNGC 2 cut(s) 374, 658
BstDEI CTNAG 5 cut(s) 58, 162, 336, 342, 612
BstEII GGTNACC 1 cut(s) 279
BstF5I GGATG 2 cut(s) 435, 583
BstFNI CGCG 6 cut(s) 99, 396, 462, 480, 551, 662
BstHHI GCGC 2 cut(s) 462, 662
BstKTI GATC 4 cut(s) 348, 366, 383, 622
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 4 cut(s) 345, 363, 380, 619
BstMCI CGRYCG 4 cut(s) 298, 322, 383, 588
BstMWI GCNNNNNNNGC 4 cut(s) 68, 167, 393, 459
BstNI CCWGG 1 cut(s) 648
BstNSI RCATGY 2 cut(s) 247, 376
BstPAI GACNNNNGTC 1 cut(s) 300
BstPI GGTNACC 1 cut(s) 279
BstSCI CCNGG 3 cut(s) 247, 258, 646
BstSFI CTRYAG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 558
BstUI CGCG 6 cut(s) 99, 396, 462, 480, 551, 662
BstV1I GCAGC 1 cut(s) 629
BstV2I GAAGAC 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 523
BstZI CGGCCG 2 cut(s) 319, 585
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 2 cut(s) 321, 587
BtsCI GGATG 2 cut(s) 435, 583
BtsIMutI CAGTG 1 cut(s) 163
Cac8I GCNNGC 2 cut(s) 374, 658
CfoI GCGC 2 cut(s) 462, 662
Cfr10I RCCGGY 2 cut(s) 276, 656
CseI GACGC 1 cut(s) 451
Csp6I GTAC 2 cut(s) 211, 308
CspAI ACCGGT 1 cut(s) 276
CviAII CATG 4 cut(s) 244, 328, 373, 517
CviJI RGCY 7 cut(s) 62, 139, 252, 321, 418, 527, 587
CviKI_1 RGCY 7 cut(s) 62, 139, 252, 321, 418, 527, 587
CviQI GTAC 2 cut(s) 211, 308
DdeI CTNAG 5 cut(s) 58, 162, 336, 342, 612
DpnI GATC 4 cut(s) 347, 365, 382, 621
DpnII GATC 4 cut(s) 345, 363, 380, 619
DraIII CACNNNGTG 1 cut(s) 562
EaeI YGGCCR 2 cut(s) 319, 585
EagI CGGCCG 2 cut(s) 319, 585
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
EciI GGCGGA 1 cut(s) 185
EclXI CGGCCG 2 cut(s) 319, 585
Eco130I CCWWGG 1 cut(s) 72
Eco32I GATATC 1 cut(s) 37
Eco52I CGGCCG 2 cut(s) 319, 585
Eco91I GGTNACC 1 cut(s) 279
EcoO65I GGTNACC 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 646
EcoRV GATATC 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 4 cut(s) 247, 331, 376, 520
FaqI GGGAC 3 cut(s) 139, 241, 416
FatI CATG 4 cut(s) 243, 327, 372, 516
FauI CCCGC 2 cut(s) 73, 544
Fnu4HI GCNGC 2 cut(s) 69, 643
FokI GGATG 2 cut(s) 422, 590
Fsp4HI GCNGC 2 cut(s) 69, 643
GlaI GCGC 2 cut(s) 461, 661
GluI GCNGC 2 cut(s) 69, 643
HaeIII GGCC 2 cut(s) 321, 587
HapII CCGG 5 cut(s) 249, 260, 277, 588, 657
HgaI GACGC 1 cut(s) 451
HhaI GCGC 2 cut(s) 462, 662
Hin1I GRCGYC 1 cut(s) 301
Hin1II CATG 4 cut(s) 247, 331, 376, 520
Hin6I GCGC 2 cut(s) 460, 660
HinP1I GCGC 2 cut(s) 460, 660
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 3 cut(s) 324, 340, 601
HpaII CCGG 5 cut(s) 249, 260, 277, 588, 657
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 3 cut(s) 34, 345, 600
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 2 cut(s) 303, 611
HpyAV CCTTC 2 cut(s) 200, 496
HpyCH4IV ACGT 2 cut(s) 120, 301
HpyCH4V TGCA 2 cut(s) 131, 376
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 167, 393, 459
HpyF3I CTNAG 5 cut(s) 58, 162, 336, 342, 612
HpySE526I ACGT 2 cut(s) 120, 301
Hsp92I GRCGYC 1 cut(s) 301
Hsp92II CATG 4 cut(s) 247, 331, 376, 520
HspAI GCGC 2 cut(s) 460, 660
KroI GCCGGC 1 cut(s) 656
KroNI GCCGGC 1 cut(s) 658
Kzo9I GATC 4 cut(s) 345, 363, 380, 619
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 1 cut(s) 629
LweI GCATC 3 cut(s) 396, 447, 532
MaeII ACGT 2 cut(s) 120, 301
MaeIII GTNAC 1 cut(s) 279
MalI GATC 4 cut(s) 347, 365, 382, 621
MboI GATC 4 cut(s) 345, 363, 380, 619
MboII GAAGA 3 cut(s) 251, 371, 629
MhlI GDGCHC 1 cut(s) 558
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 6 cut(s) 37, 99, 166, 553, 607, 661
MroNI GCCGGC 1 cut(s) 656
MroXI GAANNNNTTC 2 cut(s) 51, 189
MslI CAYNNNNRTG 2 cut(s) 395, 521
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 5 cut(s) 249, 260, 277, 588, 657
MspR9I CCNGG 3 cut(s) 249, 260, 648
MvaI CCWGG 1 cut(s) 648
MvnI CGCG 6 cut(s) 99, 396, 462, 480, 551, 662
MwoI GCNNNNNNNGC 4 cut(s) 68, 167, 393, 459
NaeI GCCGGC 1 cut(s) 658
NciI CCSGG 2 cut(s) 249, 260
NdeII GATC 4 cut(s) 345, 363, 380, 619
NgoMIV GCCGGC 1 cut(s) 656
NlaIII CATG 4 cut(s) 247, 331, 376, 520
NspI RCATGY 2 cut(s) 247, 376
PaeI GCATGC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 555
PdiI GCCGGC 1 cut(s) 658
PdmI GAANNNNTTC 2 cut(s) 51, 189
PfeI GAWTC 2 cut(s) 324, 601
PflFI GACNNNGTC 1 cut(s) 266
PinAI ACCGGT 1 cut(s) 276
PkrI GCNGC 2 cut(s) 70, 644
Ple19I CGATCG 1 cut(s) 383
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PshAI GACNNNNGTC 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 646
PspEI GGTNACC 1 cut(s) 279
PspGI CCWGG 1 cut(s) 646
PstI CTGCAG 1 cut(s) 133
PsyI GACNNNGTC 1 cut(s) 266
PvuI CGATCG 1 cut(s) 383
RsaI GTAC 2 cut(s) 212, 309
RsaNI GTAC 2 cut(s) 211, 308
RseI CAYNNNNRTG 2 cut(s) 395, 521
SatI GCNGC 2 cut(s) 69, 643
Sau3AI GATC 4 cut(s) 345, 363, 380, 619
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 3 cut(s) 249, 260, 648
SduI GDGCHC 1 cut(s) 558
SetI ASST 8 cut(s) 64, 91, 123, 304, 486, 534, 564, 672
SfaNI GCATC 3 cut(s) 396, 447, 532
SfcI CTRYAG 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 395, 521
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
SphI GCATGC 1 cut(s) 376
SsiI CCGC 8 cut(s) 66, 69, 97, 170, 478, 551, 633, 640
StyD4I CCNGG 3 cut(s) 247, 258, 646
StyI CCWWGG 1 cut(s) 72
TaiI ACGT 2 cut(s) 123, 304
TaqI TCGA 3 cut(s) 366, 622, 666
TaqII GACCGA 1 cut(s) 312
TatI WGTACW 1 cut(s) 210
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 2 cut(s) 324, 601
TscAI CASTG 1 cut(s) 163
TseI GCWGC 1 cut(s) 642
TspDTI ATGAA 2 cut(s) 30, 316
TspRI CASTG 1 cut(s) 163
Tth111I GACNNNGTC 1 cut(s) 266
XceI RCATGY 2 cut(s) 247, 376
XmnI GAANNNNTTC 2 cut(s) 51, 189
ZraI GACGTC 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.