Rmu_sc0004101.1_g000022

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004101.1
OG0000176
Physical Location & Seq
Reverse (-)
95745 .. 96284
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004101.1_g000022.1.cds

Sequence Viewer

Length: 540 bp
atgggggcttacgctcgcaaaagaaggcttagagaggcctggccatgctatgcccaaacccctaaacgattaatggattacgacctcccagaggagggaatagagggcttccactcgttgtacgaaagactatcatcatacttagtggaacaagaggcctatgatcgagtagcgaccttagaggccatcaatgaagaattctctgatcaagaacaagaggatgaggtagatattcagctcaccccggcggcgctggacgatacacctcctaaagttagagaccctaccgagaaagttaatcttggaacagcaagtgagcctatgaaagtggttatcagcacttacttaaagcttagcgagaaacagaggctcattgacttattgctggaattcaaagactgttttgcggagaagtatgaagacatgcctggcctgtcaccggatttggtttgccatcaactgccaacactccctaacaagaggcctgtgaaacaagaaccgcgaagggatgaattcagaaacccaagtcctcgtcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

179

Amino Acids

20.82

Weight (kDa)

4.84

Isoelectric Point (pI)

63.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 502
AciI CCGC 3 cut(s) 248, 407, 500
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 3 cut(s) 197, 389, 512
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 4 cut(s) 91, 94, 95, 439
AgsI TTSAA 1 cut(s) 394
AjnI CCWGG 2 cut(s) 38, 427
AluBI AGCT 2 cut(s) 238, 352
AluI AGCT 2 cut(s) 238, 352
Alw26I GTCTC 1 cut(s) 273
AoxI GGCC 6 cut(s) 36, 41, 156, 183, 430, 482
ApoI RAATTY 3 cut(s) 197, 389, 512
AseI ATTAAT 1 cut(s) 71
AspLEI GCGC 1 cut(s) 253
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 232, 429
BalI TGGCCA 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 426
BccI CCATC 2 cut(s) 194, 462
BciT130I CCWGG 2 cut(s) 40, 429
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 254
BisI GCNGC 1 cut(s) 249
BlpI GCTNAGC 1 cut(s) 353
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 3 cut(s) 40, 245, 429
BmrFI CCNGG 3 cut(s) 40, 245, 429
BpiI GAAGAC 1 cut(s) 426
Bpu1102I GCTNAGC 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 439
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 94, 95, 439
BseBI CCWGG 2 cut(s) 40, 429
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 2 cut(s) 226, 514
BseLI CCNNNNNNNGG 4 cut(s) 91, 94, 95, 439
BseRI GAGGAG 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 502
BshFI GGCC 6 cut(s) 38, 43, 158, 185, 432, 484
BsiSI CCGG 2 cut(s) 245, 440
BslI CCNNNNNNNGG 4 cut(s) 91, 94, 95, 439
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 6 cut(s) 38, 43, 158, 185, 432, 484
Bso31I GGTCTC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 163, 205
Bsp1720I GCTNAGC 1 cut(s) 353
BspACI CCGC 3 cut(s) 248, 407, 500
BspANI GGCC 6 cut(s) 38, 43, 158, 185, 432, 484
BspFNI CGCG 1 cut(s) 502
BspTNI GGTCTC 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 2 cut(s) 163, 205
Bst2UI CCWGG 2 cut(s) 40, 429
Bst4CI ACNGT 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 4 cut(s) 29, 142, 178, 353
BstENI CCTNNNNNAGG 1 cut(s) 89
BstF5I GGATG 2 cut(s) 226, 514
BstFNI CGCG 1 cut(s) 502
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 2 cut(s) 166, 208
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 2 cut(s) 163, 205
BstNI CCWGG 2 cut(s) 40, 429
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 3 cut(s) 38, 243, 427
BstUI CGCG 1 cut(s) 502
BstV2I GAAGAC 1 cut(s) 426
BsuRI GGCC 6 cut(s) 38, 43, 158, 185, 432, 484
BtsCI GGATG 2 cut(s) 226, 514
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 121
CviAII CATG 2 cut(s) 45, 424
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 4 cut(s) 29, 142, 178, 353
DpnI GATC 2 cut(s) 165, 207
DpnII GATC 2 cut(s) 163, 205
EaeI YGGCCR 1 cut(s) 41
Eco147I AGGCCT 3 cut(s) 38, 158, 484
Eco31I GGTCTC 1 cut(s) 273
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoRI GAATTC 3 cut(s) 197, 389, 512
EcoRII CCWGG 2 cut(s) 38, 427
FaeI CATG 2 cut(s) 48, 427
FaiI YATR 7 cut(s) 46, 51, 139, 162, 323, 417, 425
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 2 cut(s) 44, 423
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 2 cut(s) 233, 521
Fsp4HI GCNGC 1 cut(s) 249
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 249
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 6 cut(s) 38, 43, 158, 185, 432, 484
HapII CCGG 2 cut(s) 245, 440
HhaI GCGC 1 cut(s) 253
Hin1II CATG 2 cut(s) 48, 427
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HindIII AAGCTT 1 cut(s) 350
HpaII CCGG 2 cut(s) 245, 440
HphI GGTGA 2 cut(s) 232, 429
Hpy188I TCNGA 2 cut(s) 205, 518
Hpy188III TCNNGA 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 18, 498
HpyCH4III ACNGT 1 cut(s) 401
HpyF3I CTNAG 4 cut(s) 29, 142, 178, 353
Hsp92II CATG 2 cut(s) 48, 427
HspAI GCGC 1 cut(s) 251
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 163, 205
MaeIII GTNAC 1 cut(s) 435
MalI GATC 2 cut(s) 165, 207
MboI GATC 2 cut(s) 163, 205
MboII GAAGA 2 cut(s) 206, 431
MlsI TGGCCA 1 cut(s) 43
MluCI AATT 3 cut(s) 197, 389, 512
MluNI TGGCCA 1 cut(s) 43
Mox20I TGGCCA 1 cut(s) 43
MscI TGGCCA 1 cut(s) 43
MseI TTAA 3 cut(s) 71, 297, 347
Msp20I TGGCCA 1 cut(s) 43
MspI CCGG 2 cut(s) 245, 440
MspR9I CCNGG 3 cut(s) 40, 245, 429
MvaI CCWGG 2 cut(s) 40, 429
MvnI CGCG 1 cut(s) 502
NciI CCSGG 1 cut(s) 245
NdeII GATC 2 cut(s) 163, 205
NlaIII CATG 2 cut(s) 48, 427
NmuCI GTSAC 1 cut(s) 435
NspI RCATGY 1 cut(s) 427
PceI AGGCCT 3 cut(s) 38, 158, 484
PkrI GCNGC 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 38, 427
PspGI CCWGG 2 cut(s) 38, 427
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SaqAI TTAA 3 cut(s) 71, 297, 347
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 2 cut(s) 163, 205
ScrFI CCNGG 3 cut(s) 40, 245, 429
SetI ASST 6 cut(s) 87, 179, 228, 240, 268, 354
Sse9I AATT 3 cut(s) 197, 389, 512
SseBI AGGCCT 3 cut(s) 38, 158, 484
SsiI CCGC 3 cut(s) 248, 407, 500
StuI AGGCCT 3 cut(s) 38, 158, 484
StyD4I CCNGG 3 cut(s) 38, 243, 427
TaaI ACNGT 1 cut(s) 401
TaqI TCGA 1 cut(s) 166
TasI AATT 3 cut(s) 197, 389, 512
TauI GCSGC 1 cut(s) 251
Tru1I TTAA 3 cut(s) 71, 297, 347
Tru9I TTAA 3 cut(s) 71, 297, 347
TseFI GTSAC 1 cut(s) 435
Tsp45I GTSAC 1 cut(s) 435
TspDTI ATGAA 4 cut(s) 207, 338, 432, 525
VspI ATTAAT 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 89
XapI RAATTY 3 cut(s) 197, 389, 512
XceI RCATGY 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.