Rroxscaffold_3G00223190

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
6311144 .. 6312679
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223190.1

Sequence Viewer

Length: 567 bp
ATGCGGGAACAACGAGATACACCTATGGAAGTGGCTATCGGCGCTTACTTGGAGCCTAGCGAGAGACAAAGGCTCATTGACTTATTACTAGAATTCAAAGATTGCTTCGCGGAAAGCTATACATTTCGGGCCGAAGCTTCCATTGGTAGCCTACTCGCCCAAGATGATGAGGAAGGAGTGGAGCATGCCATTTTCTACCTCGGTCGGACCCTTACAGATTGTGAAACAAGGTATACTCCTATGGAAAACCTGTGCCTTACGCTGTATTTTTCGGCATGCAAGTTGCGACACTACATGTTATCCTTCACGACCTGCATCATCGCTCAAACCGACTTGGTCAAACACATGCCGTCGCGGCTTATTTCGCGTGGCCGCATTGGCAAGTGGGTTCGGCTCTGTCGAATTCTCGCTCCAATATGTTCCCCTAAAAGCGATAAAGGGACAGGCCATCGCAGACTTCCCGGCACATCATCCTATGTTGGATATCCCTATAGTGAAGGAGTTAGAGATCGCGACCGCAACTACAACTCGACCGGATCCGGCATGCATCCCGAGTATGCGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

188

Amino Acids

21.46

Weight (kDa)

6.95

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH PF17917 46 - 130 6.6e-11 RNase H-like domain found in reverse transcriptase
RT_RNaseH_2 PF17919 46 - 101 4.2e-08 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 320
AccI GTMKAC 1 cut(s) 233
AccII CGCG 4 cut(s) 110, 355, 367, 513
AciI CCGC 6 cut(s) 4, 110, 355, 373, 517, 560
AclWI GGATC 2 cut(s) 531, 544
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 2 cut(s) 92, 402
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 1 cut(s) 97
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 2 cut(s) 117, 137
AluI AGCT 2 cut(s) 117, 137
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 2 cut(s) 531, 544
Ama87I CYCGRG 1 cut(s) 551
AoxI GGCC 3 cut(s) 129, 370, 445
ApoI RAATTY 2 cut(s) 92, 402
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 129, 207
AsuC2I CCSGG 1 cut(s) 462
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 1 cut(s) 207
BamHI GGATCC 1 cut(s) 536
BccI CCATC 1 cut(s) 456
BceAI ACGGC 1 cut(s) 334
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 2 cut(s) 57, 89
BfmI CTRYAG 1 cut(s) 490
BfoI RGCGCY 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 320
BglI GCCNNNNNGGC 2 cut(s) 355, 378
BisI GCNGC 2 cut(s) 356, 373
BlsI GCNGC 2 cut(s) 357, 374
Bme1390I CCNGG 1 cut(s) 462
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 551
BmgT120I GGNCC 2 cut(s) 129, 207
BmiI GGNNCC 3 cut(s) 54, 209, 538
BmrFI CCNGG 1 cut(s) 462
BmsI GCATC 2 cut(s) 324, 556
BpuMI CCSGG 1 cut(s) 462
BsaJI CCNNGG 1 cut(s) 199
BsaWI WCCGGW 1 cut(s) 533
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 2 cut(s) 470, 547
Bsh1236I CGCG 4 cut(s) 110, 355, 367, 513
Bsh1285I CGRYCG 3 cut(s) 205, 517, 534
BshFI GGCC 3 cut(s) 131, 372, 447
BsiEI CGRYCG 3 cut(s) 205, 517, 534
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 3 cut(s) 462, 534, 540
BslFI GGGAC 1 cut(s) 454
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 3 cut(s) 131, 372, 447
BsoBI CYCGRG 1 cut(s) 551
Bsp143I GATC 2 cut(s) 508, 536
Bsp68I TCGCGA 1 cut(s) 513
BspACI CCGC 6 cut(s) 4, 110, 355, 373, 517, 560
BspANI GGCC 3 cut(s) 131, 372, 447
BspFNI CGCG 4 cut(s) 110, 355, 367, 513
BspLI GGNNCC 3 cut(s) 54, 209, 538
BspMI ACCTGC 1 cut(s) 320
BspPI GGATC 2 cut(s) 531, 544
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 2 cut(s) 508, 536
BssNAI GTATAC 1 cut(s) 234
Bst1107I GTATAC 1 cut(s) 234
BstC8I GCNNGC 3 cut(s) 186, 277, 545
BstF5I GGATG 2 cut(s) 470, 547
BstFNI CGCG 4 cut(s) 110, 355, 367, 513
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 2 cut(s) 511, 539
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 2 cut(s) 508, 536
BstMCI CGRYCG 3 cut(s) 205, 517, 534
BstMWI GCNNNNNNNGC 4 cut(s) 41, 355, 364, 378
BstNSI RCATGY 5 cut(s) 188, 279, 298, 349, 547
BstSCI CCNGG 1 cut(s) 460
BstSFI CTRYAG 1 cut(s) 490
BstUI CGCG 4 cut(s) 110, 355, 367, 513
BstX2I RGATCY 1 cut(s) 536
BstYI RGATCY 1 cut(s) 536
BstZ17I GTATAC 1 cut(s) 234
BsuRI GGCC 3 cut(s) 131, 372, 447
BtgZI GCGATG 2 cut(s) 304, 434
BtsCI GGATG 2 cut(s) 470, 547
BtuMI TCGCGA 1 cut(s) 513
BveI ACCTGC 1 cut(s) 320
Cac8I GCNNGC 3 cut(s) 186, 277, 545
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 129, 207
CviAII CATG 5 cut(s) 185, 276, 295, 346, 544
DpnI GATC 2 cut(s) 510, 538
DpnII GATC 2 cut(s) 508, 536
EaeI YGGCCR 1 cut(s) 370
Eco32I GATATC 1 cut(s) 485
Eco47I GGWCC 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 551
EcoRI GAATTC 2 cut(s) 92, 402
EcoRV GATATC 1 cut(s) 485
EcoT22I ATGCAT 1 cut(s) 549
FaeI CATG 5 cut(s) 188, 279, 298, 349, 547
FaqI GGGAC 1 cut(s) 454
FatI CATG 5 cut(s) 184, 275, 294, 345, 543
FblI GTMKAC 1 cut(s) 233
Fnu4HI GCNGC 2 cut(s) 356, 373
FokI GGATG 2 cut(s) 457, 534
Fsp4HI GCNGC 2 cut(s) 356, 373
FspBI CTAG 2 cut(s) 57, 89
GlaI GCGC 1 cut(s) 43
GluI GCNGC 2 cut(s) 356, 373
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 3 cut(s) 131, 372, 447
HapII CCGG 3 cut(s) 462, 534, 540
HhaI GCGC 1 cut(s) 44
Hin1II CATG 5 cut(s) 188, 279, 298, 349, 547
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 135
HpaII CCGG 3 cut(s) 462, 534, 540
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 3 cut(s) 307, 512, 551
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 3 cut(s) 167, 313, 491
HpyCH4V TGCA 3 cut(s) 279, 315, 547
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 355, 364, 378
Hsp92II CATG 5 cut(s) 188, 279, 298, 349, 547
HspAI GCGC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 508, 536
LmnI GCTCC 3 cut(s) 52, 181, 415
LpnPI CCDG 6 cut(s) 263, 325, 429, 475, 547, 553
LweI GCATC 2 cut(s) 324, 556
MaeI CTAG 2 cut(s) 57, 89
MalI GATC 2 cut(s) 510, 538
MboI GATC 2 cut(s) 508, 536
MflI RGATCY 1 cut(s) 536
MluCI AATT 2 cut(s) 92, 402
MmeI TCCRAC 2 cut(s) 185, 460
MnlI CCTC 2 cut(s) 163, 209
Mph1103I ATGCAT 1 cut(s) 549
MspI CCGG 3 cut(s) 462, 534, 540
MspR9I CCNGG 1 cut(s) 462
MvnI CGCG 4 cut(s) 110, 355, 367, 513
MwoI GCNNNNNNNGC 4 cut(s) 41, 355, 364, 378
NciI CCSGG 1 cut(s) 462
NdeII GATC 2 cut(s) 508, 536
NlaIII CATG 5 cut(s) 188, 279, 298, 349, 547
NlaIV GGNNCC 3 cut(s) 54, 209, 538
NruI TCGCGA 1 cut(s) 513
NsiI ATGCAT 1 cut(s) 549
NspI RCATGY 5 cut(s) 188, 279, 298, 349, 547
PaeI GCATGC 3 cut(s) 188, 279, 547
PciI ACATGT 1 cut(s) 294
PcsI WCGNNNNNNNCGW 2 cut(s) 327, 397
PflFI GACNNNGTC 1 cut(s) 335
PkrI GCNGC 2 cut(s) 357, 374
PscI ACATGT 1 cut(s) 294
PspN4I GGNNCC 3 cut(s) 54, 209, 538
PspPI GGNCC 2 cut(s) 129, 207
PsuI RGATCY 1 cut(s) 536
PsyI GACNNNGTC 1 cut(s) 335
RruI TCGCGA 1 cut(s) 513
SatI GCNGC 2 cut(s) 356, 373
Sau3AI GATC 2 cut(s) 508, 536
Sau96I GGNCC 2 cut(s) 129, 207
ScrFI CCNGG 1 cut(s) 462
SetI ASST 7 cut(s) 25, 119, 139, 201, 233, 252, 314
SfaNI GCATC 2 cut(s) 324, 556
SfcI CTRYAG 1 cut(s) 490
SinI GGWCC 1 cut(s) 207
SphI GCATGC 3 cut(s) 188, 279, 547
Sse9I AATT 2 cut(s) 92, 402
SsiI CCGC 6 cut(s) 4, 110, 355, 373, 517, 560
SspMI CTAG 2 cut(s) 57, 89
StyD4I CCNGG 1 cut(s) 460
TaqI TCGA 2 cut(s) 400, 530
TaqII GACCGA 1 cut(s) 191
TasI AATT 2 cut(s) 92, 402
TauI GCSGC 2 cut(s) 358, 375
Tth111I GACNNNGTC 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 2 cut(s) 92, 402
XceI RCATGY 5 cut(s) 188, 279, 298, 349, 547
XmiI GTMKAC 1 cut(s) 233
XspI CTAG 2 cut(s) 57, 89
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.