Rmu_co8153002.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8153002.1
OG0000176
Physical Location & Seq
Forward (+)
165 .. 653
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8153002.1_g000001.1.cds

Sequence Viewer

Length: 489 bp
atggattacgacttctcaggggaggggatcgaagccttccactcgatatacgagcgactatcatcatacttggtggaaaaagaggcttatgatcgaatcgtgaccttggaggtcgtcaatgaagaactttctgatcaggagcgagaggatgaaataagtattcagcttgccccagcagcgctagatgatacacctcctaaagtcagagaccctactgaaaaggttaatctgggaacagtggaagagcctatggaaatggctatcagtgcttacctagagcctagcgagaagcagaggcttaccgatttgttactggagtttaaagattgctttgcggagaagtatgaggacatgcccgacctgtcacctgatttggtttgtcatcaactaccaactctccctgacaaaaggcccgtgaagcaagaacctcgacggatgaattcagaaacccaggttctcgtcaaggaggaagtcgagaaaatgcataag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

163

Amino Acids

18.88

Weight (kDa)

4.43

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 335
AclWI GGATC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 439
AfeI AGCGCT 1 cut(s) 180
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 1 cut(s) 35
Aor51HI AGCGCT 1 cut(s) 180
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 439
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 411
AsuHPI GGTGA 1 cut(s) 357
BbvI GCAGC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 1 cut(s) 452
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 3 cut(s) 182, 275, 282
BfoI RGCGCY 1 cut(s) 182
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 411
BmrFI CCNGG 1 cut(s) 452
BpmI CTGGAG 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 105, 450
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bse1I ACTGG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 105, 450
BseGI GGATG 2 cut(s) 154, 441
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 318
BseXI GCAGC 1 cut(s) 188
BseYI CCCAGC 1 cut(s) 172
BshFI GGCC 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 1 cut(s) 412
Bso31I GGTCTC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 27, 91, 133
BspACI CCGC 1 cut(s) 335
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 1 cut(s) 29
BspPI GGATC 1 cut(s) 35
BspQI GCTCTTC 1 cut(s) 237
BspTNI GGTCTC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 105, 450
BssMI GATC 3 cut(s) 27, 91, 133
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 2 cut(s) 154, 441
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 3 cut(s) 30, 94, 136
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 3 cut(s) 27, 91, 133
BstMWI GCNNNNNNNGC 3 cut(s) 176, 266, 418
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 412
BtsCI GGATG 2 cut(s) 154, 441
BtsIMutI CAGTG 2 cut(s) 243, 271
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 411
CviAII CATG 1 cut(s) 352
CviJI RGCY 8 cut(s) 35, 86, 166, 247, 260, 280, 298, 412
CviKI_1 RGCY 8 cut(s) 35, 86, 166, 247, 260, 280, 298, 412
DdeI CTNAG 1 cut(s) 16
DpnI GATC 3 cut(s) 29, 93, 135
DpnII GATC 3 cut(s) 27, 91, 133
DraI TTTAAA 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 201
Eco47III AGCGCT 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 450
EcoT14I CCWWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 355
FaiI YATR 7 cut(s) 49, 67, 90, 251, 345, 353, 486
FatI CATG 1 cut(s) 351
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 2 cut(s) 161, 448
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 3 cut(s) 182, 275, 282
GlaI GCGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 177
GsaI CCCAGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 1 cut(s) 412
HhaI GCGC 1 cut(s) 181
Hin1II CATG 1 cut(s) 355
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 1 cut(s) 96
HphI GGTGA 1 cut(s) 357
Hpy188I TCNGA 3 cut(s) 133, 206, 445
Hpy188III TCNNGA 3 cut(s) 100, 137, 475
Hpy99I CGWCG 1 cut(s) 435
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 484
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 266, 418
HpyF3I CTNAG 1 cut(s) 16
Hsp92II CATG 1 cut(s) 355
HspAI GCGC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 27, 91, 133
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 3 cut(s) 182, 275, 282
MaeIII GTNAC 3 cut(s) 100, 309, 363
MalI GATC 3 cut(s) 29, 93, 135
MboI GATC 3 cut(s) 27, 91, 133
MboII GAAGA 2 cut(s) 134, 254
MluCI AATT 1 cut(s) 439
MnlI CCTC 9 cut(s) 16, 76, 103, 139, 204, 288, 340, 438, 460
Mph1103I ATGCAT 1 cut(s) 486
MseI TTAA 2 cut(s) 225, 321
MspR9I CCNGG 1 cut(s) 452
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 3 cut(s) 176, 266, 418
NdeII GATC 3 cut(s) 27, 91, 133
NlaIII CATG 1 cut(s) 355
NmuCI GTSAC 2 cut(s) 100, 363
NsiI ATGCAT 1 cut(s) 486
NspI RCATGY 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 450
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 450
PspPI GGNCC 1 cut(s) 411
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 2 cut(s) 225, 321
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 3 cut(s) 27, 91, 133
Sau96I GGNCC 1 cut(s) 411
ScrFI CCNGG 1 cut(s) 452
Sse9I AATT 1 cut(s) 439
SsiI CCGC 1 cut(s) 335
SspMI CTAG 3 cut(s) 182, 275, 282
StyD4I CCNGG 1 cut(s) 450
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 5 cut(s) 30, 44, 94, 430, 474
TasI AATT 1 cut(s) 439
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 2 cut(s) 225, 321
Tru9I TTAA 2 cut(s) 225, 321
TscAI CASTG 2 cut(s) 243, 271
TseFI GTSAC 2 cut(s) 100, 363
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 2 cut(s) 100, 363
TspDTI ATGAA 3 cut(s) 135, 165, 452
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 2 cut(s) 243, 271
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 355
XspI CTAG 3 cut(s) 182, 275, 282
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.