Rmu_sc0004718.1_g000011

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004718.1
OG0000176
Physical Location & Seq
Reverse (-)
42155 .. 42571
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004718.1_g000011.1.cds

Sequence Viewer

Length: 417 bp
atggattacgacctctcggaggaggggatagaggccttccactcaatatacgaacggctatcatcatacttggtggaaaaagaggcttatgatcgaatcgcgaccttggaggtcgttaatgaagaactttctgatcaggagcatgaggatgaaataggtattcagcttgccccggcagcgctggacgatacacctcctaaagtcagagaccctactgaaaaggttaatctgggaacagtggacgagcctatgggagtggctatcagtgcttacctagaacctagcaagaagcagaggctcactgagttgttactggagtttaaggattgctttgcggagaagtatgaggacatgcccgcctatcaccagatttggtttgtcatcaactaccaactctccctgacaagaggcccgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

138

Amino Acids

15.86

Weight (kDa)

4.31

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 101
AciI CCGC 2 cut(s) 335, 357
AfeI AGCGCT 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 19
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 201
Aor51HI AGCGCT 1 cut(s) 180
AoxI GGCC 2 cut(s) 33, 409
ApeKI GCWGC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 356
BbvI GCAGC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 71
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 2 cut(s) 275, 282
BfoI RGCGCY 1 cut(s) 182
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 105, 171
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 105, 171
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 2 cut(s) 35, 411
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 2 cut(s) 35, 411
Bso31I GGTCTC 1 cut(s) 201
Bsp143I GATC 2 cut(s) 91, 133
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 2 cut(s) 335, 357
BspANI GGCC 2 cut(s) 35, 411
BspCNI CTCAG 1 cut(s) 295
BspFNI CGCG 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 105, 171
BssMI GATC 2 cut(s) 91, 133
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 168, 357
BstDEI CTNAG 1 cut(s) 303
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 2 cut(s) 94, 136
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 2 cut(s) 91, 133
BstMWI GCNNNNNNNGC 2 cut(s) 176, 266
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 171
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 188
BsuRI GGCC 2 cut(s) 35, 411
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 3 cut(s) 243, 271, 300
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 168, 357
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 410
CviAII CATG 2 cut(s) 143, 352
CviJI RGCY 8 cut(s) 35, 58, 86, 166, 247, 260, 298, 411
CviKI_1 RGCY 8 cut(s) 35, 58, 86, 166, 247, 260, 298, 411
DdeI CTNAG 1 cut(s) 303
DpnI GATC 2 cut(s) 93, 135
DpnII GATC 2 cut(s) 91, 133
Eco130I CCWWGG 1 cut(s) 105
Eco147I AGGCCT 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 201
Eco47III AGCGCT 1 cut(s) 180
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 2 cut(s) 146, 355
FaiI YATR 7 cut(s) 49, 67, 90, 144, 251, 345, 353
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FatI CATG 2 cut(s) 142, 351
FauI CCCGC 1 cut(s) 364
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 2 cut(s) 275, 282
GlaI GCGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 2 cut(s) 35, 411
HapII CCGG 1 cut(s) 173
HhaI GCGC 1 cut(s) 181
Hin1II CATG 2 cut(s) 146, 355
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 1 cut(s) 96
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 19, 133, 206
Hpy188III TCNNGA 2 cut(s) 100, 137
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 266
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 2 cut(s) 146, 355
HspAI GCGC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 91, 133
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 7 cut(s) 122, 167, 186, 215, 299, 380, 413
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 2 cut(s) 275, 282
MaeIII GTNAC 1 cut(s) 309
MalI GATC 2 cut(s) 93, 135
MboI GATC 2 cut(s) 91, 133
MboII GAAGA 1 cut(s) 134
MseI TTAA 3 cut(s) 117, 225, 321
MslI CAYNNNNRTG 1 cut(s) 147
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 176, 266
NciI CCSGG 1 cut(s) 173
NdeII GATC 2 cut(s) 91, 133
NlaIII CATG 2 cut(s) 146, 355
NruI TCGCGA 1 cut(s) 101
NspI RCATGY 1 cut(s) 355
PceI AGGCCT 1 cut(s) 35
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 410
RruI TCGCGA 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 3 cut(s) 117, 225, 321
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 91, 133
Sau96I GGNCC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 173
SetI ASST 9 cut(s) 15, 107, 114, 160, 168, 196, 225, 276, 283
SmiMI CAYNNNNRTG 1 cut(s) 147
SseBI AGGCCT 1 cut(s) 35
SsiI CCGC 2 cut(s) 335, 357
SspMI CTAG 2 cut(s) 275, 282
StuI AGGCCT 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 94
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 3 cut(s) 117, 225, 321
Tru9I TTAA 3 cut(s) 117, 225, 321
TscAI CASTG 3 cut(s) 243, 271, 307
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 135, 165
TspRI CASTG 3 cut(s) 243, 271, 307
XagI CCTNNNNNAGG 1 cut(s) 17
XceI RCATGY 1 cut(s) 355
XspI CTAG 2 cut(s) 275, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.