Rmu_sc0000740.1_g000054

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000740.1
OG0000176
Physical Location & Seq
Reverse (-)
219870 .. 220223
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000740.1_g000054.1.cds

Sequence Viewer

Length: 354 bp
atggtggagaaagaggcttacgatcgcatcgcgaccttggaggtcgttaatgaagaactttctgacccggaggatgaagatgacgtccatattcagctcgccccggcggcgctggatgacacacctccaaaggttaaagaccccactgaaaaagtcaacctgggtaccgtaagcgagcctatggaggtctccatcagtgcttacctagagcctagcgagaaacagaggctcatcgacctactgctagaattcaaggattgcttcgcgaagaagtatgaggacatgcctggcctgtcgccagatttggtttgtcatcaactaccaactcttactgacaagaggcctgtcaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

117

Amino Acids

13.18

Weight (kDa)

4.37

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 87
Acc65I GGTACC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 2 cut(s) 32, 266
AciI CCGC 1 cut(s) 107
AcsI RAATTY 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 166
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 2 cut(s) 159, 286
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 193
AoxI GGCC 2 cut(s) 289, 341
ApoI RAATTY 1 cut(s) 248
Asp718I GGTACC 1 cut(s) 164
AspLEI GCGC 1 cut(s) 112
AsuC2I CCSGG 2 cut(s) 68, 104
BaeI ACNNNNGTAYC 2 cut(s) 148, 181
BanI GGYRCC 1 cut(s) 164
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 2 cut(s) 161, 288
BcnI CCSGG 2 cut(s) 68, 104
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 3 cut(s) 206, 213, 245
BfoI RGCGCY 1 cut(s) 113
BglI GCCNNNNNGGC 1 cut(s) 107
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 4 cut(s) 68, 104, 161, 288
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 4 cut(s) 68, 104, 161, 288
BmsI GCATC 1 cut(s) 36
BpuMI CCSGG 2 cut(s) 68, 104
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 3 cut(s) 36, 102, 160
BseBI CCWGG 2 cut(s) 161, 288
BseDI CCNNGG 3 cut(s) 36, 102, 160
BseGI GGATG 2 cut(s) 79, 121
Bsh1236I CGCG 2 cut(s) 32, 266
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 2 cut(s) 291, 343
BshNI GGYRCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 25
BsiSI CCGG 2 cut(s) 68, 104
BsmAI GTCTC 1 cut(s) 193
BsnI GGCC 2 cut(s) 291, 343
Bso31I GGTCTC 1 cut(s) 193
Bsp143I GATC 1 cut(s) 22
Bsp68I TCGCGA 2 cut(s) 32, 266
BspACI CCGC 1 cut(s) 107
BspANI GGCC 2 cut(s) 291, 343
BspFNI CGCG 2 cut(s) 32, 266
BspLI GGNNCC 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 36, 102, 160
BssMI GATC 1 cut(s) 22
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 161, 288
Bst4CI ACNGT 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 99, 176
BstF5I GGATG 2 cut(s) 79, 121
BstFNI CGCG 2 cut(s) 32, 266
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 22
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 2 cut(s) 161, 288
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 4 cut(s) 66, 102, 159, 286
BstUI CGCG 2 cut(s) 32, 266
BsuRI GGCC 2 cut(s) 291, 343
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 79, 121
BtsIMutI CAGTG 2 cut(s) 144, 202
BtuMI TCGCGA 2 cut(s) 32, 266
Cac8I GCNNGC 2 cut(s) 99, 176
CfoI GCGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 165
CviAII CATG 1 cut(s) 283
CviJI RGCY 7 cut(s) 17, 97, 178, 211, 229, 291, 343
CviKI_1 RGCY 7 cut(s) 17, 97, 178, 211, 229, 291, 343
CviQI GTAC 1 cut(s) 165
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 343
Eco31I GGTCTC 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 159, 286
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 286
FaiI YATR 4 cut(s) 90, 182, 276, 284
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 2 cut(s) 86, 128
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 3 cut(s) 206, 213, 245
GlaI GCGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 2 cut(s) 291, 343
HapII CCGG 2 cut(s) 68, 104
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HpaII CCGG 2 cut(s) 68, 104
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 31, 265
Hpy8I GTNNAC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 1 cut(s) 110
KpnI GGTACC 1 cut(s) 168
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 9 cut(s) 81, 98, 117, 146, 173, 273, 300, 305, 312
LweI GCATC 1 cut(s) 36
MaeI CTAG 3 cut(s) 206, 213, 245
MaeII ACGT 1 cut(s) 84
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 3 cut(s) 65, 89, 280
MluCI AATT 1 cut(s) 248
MnlI CCTC 8 cut(s) 7, 34, 64, 135, 178, 219, 271, 333
MseI TTAA 2 cut(s) 48, 135
MspI CCGG 2 cut(s) 68, 104
MspR9I CCNGG 4 cut(s) 68, 104, 161, 288
MvaI CCWGG 2 cut(s) 161, 288
MvnI CGCG 2 cut(s) 32, 266
MwoI GCNNNNNNNGC 1 cut(s) 107
NciI CCSGG 2 cut(s) 68, 104
NdeII GATC 1 cut(s) 22
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 1 cut(s) 166
NruI TCGCGA 2 cut(s) 32, 266
NspI RCATGY 1 cut(s) 286
PceI AGGCCT 1 cut(s) 343
PkrI GCNGC 1 cut(s) 109
Ple19I CGATCG 1 cut(s) 25
Psp6I CCWGG 2 cut(s) 159, 286
PspGI CCWGG 2 cut(s) 159, 286
PspN4I GGNNCC 1 cut(s) 166
PvuI CGATCG 1 cut(s) 25
RruI TCGCGA 2 cut(s) 32, 266
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 48, 135
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 22
ScrFI CCNGG 4 cut(s) 68, 104, 161, 288
SfaNI GCATC 1 cut(s) 36
Sse9I AATT 1 cut(s) 248
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 1 cut(s) 107
SspMI CTAG 3 cut(s) 206, 213, 245
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 4 cut(s) 66, 102, 159, 286
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 234
TasI AATT 1 cut(s) 248
TauI GCSGC 1 cut(s) 110
Tru1I TTAA 2 cut(s) 48, 135
Tru9I TTAA 2 cut(s) 48, 135
TscAI CASTG 2 cut(s) 151, 202
TspDTI ATGAA 2 cut(s) 66, 90
TspRI CASTG 2 cut(s) 151, 202
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 286
XspI CTAG 3 cut(s) 206, 213, 245
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.