Rmu_sc0042802.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042802.1
OG0000176
Physical Location & Seq
Forward (+)
1 .. 895
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042802.1_g000001.1.cds

Sequence Viewer

Length: 713 bp
ttgcggacaaggcgaaaattgtcaaagcagacccgcgaccttttttggtgtccgccagctacgtggacgcaaggtactacccagaaccaatctctcatttacaggtcgttggtattgatgataagggccgccccacaggggtgacggcctttgaattggcacaatggggtctcgcggttgcaaaaaaggacctcgaaaggcctggacatgcggtgccatctccaacagcattggatgatacaccgccaaaggttagagatcctacagaaaaggtaaatttgggcagtgacgcgaagccaatggaagtggcaataagcgcaaaattagagcctgatgaaaaacaggggctcatcaatttattgcgggaatataaggattgtttcgcagagaaatatgaagatatgcccagattatctcttgacttggtcttccgtaaactgtcgactatcctagatctaaatccagtgaagcaggagtccaggcgaatgaactcagaaacccaggtgttggttaaggaggaagtcgagaagatgcataagtcaggaatcatcaaggtagccaagtataatcagtggcactgttgttccggttcgaaagaagaatggcaaaatgaggctgtgcgtcgactaccacgatctcaatcaggccactcccaaagacgtttaccccatgccagtagcagacatgttggtggacgcaatagctggtcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

236

Amino Acids

26.59

Weight (kDa)

9.01

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 213
AccB7I CCANNNNNTGG 1 cut(s) 507
AccI GTMKAC 2 cut(s) 442, 624
AccII CGCG 3 cut(s) 36, 175, 292
AciI CCGC 8 cut(s) 4, 34, 53, 129, 175, 211, 244, 363
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 1 cut(s) 276
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 2 cut(s) 138, 507
AflIII ACRYGT 1 cut(s) 684
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 3 cut(s) 201, 478, 500
AleI CACNNNNGTG 1 cut(s) 139
AluBI AGCT 2 cut(s) 59, 704
AluI AGCT 2 cut(s) 59, 704
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 1 cut(s) 253
AoxI GGCC 4 cut(s) 126, 146, 199, 645
ApoI RAATTY 1 cut(s) 276
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 2 cut(s) 126, 189
AsuHPI GGTGA 1 cut(s) 153
AsuII TTCGAA 1 cut(s) 592
AvaII GGWCC 1 cut(s) 189
BanI GGYRCC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 420
BccI CCATC 1 cut(s) 225
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 3 cut(s) 203, 480, 502
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 1 cut(s) 451
BfmI CTRYAG 1 cut(s) 263
BglII AGATCT 1 cut(s) 453
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 3 cut(s) 203, 480, 502
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 126, 189
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 3 cut(s) 203, 480, 502
BmsI GCATC 1 cut(s) 521
BpiI GAAGAC 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 592
BsaAI YACGTR 1 cut(s) 63
BsaBI GATNNNNATC 2 cut(s) 458, 639
BsaI GGTCTC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 500
BsaWI WCCGGW 1 cut(s) 586
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 507
Bse1I ACTGG 2 cut(s) 463, 674
Bse8I GATNNNNATC 2 cut(s) 458, 639
BseBI CCWGG 3 cut(s) 203, 480, 502
BseDI CCNNGG 1 cut(s) 500
BseGI GGATG 1 cut(s) 240
BseJI GATNNNNATC 2 cut(s) 458, 639
BseLI CCNNNNNNNGG 2 cut(s) 138, 507
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 2 cut(s) 463, 674
Bsh1236I CGCG 3 cut(s) 36, 175, 292
BshFI GGCC 4 cut(s) 128, 148, 201, 647
BshNI GGYRCC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 587
BslI CCNNNNNNNGG 2 cut(s) 138, 507
BsmAI GTCTC 1 cut(s) 175
BsnI GGCC 4 cut(s) 128, 148, 201, 647
Bso31I GGTCTC 1 cut(s) 175
Bsp119I TTCGAA 1 cut(s) 592
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 3 cut(s) 258, 453, 634
BspACI CCGC 8 cut(s) 4, 34, 53, 129, 175, 211, 244, 363
BspANI GGCC 4 cut(s) 128, 148, 201, 647
BspCNI CTCAG 1 cut(s) 505
BspFNI CGCG 3 cut(s) 36, 175, 292
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 1 cut(s) 215
BspPI GGATC 1 cut(s) 253
BspT104I TTCGAA 1 cut(s) 592
BspT107I GGYRCC 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 175
BsrI ACTGG 2 cut(s) 463, 674
BssECI CCNNGG 1 cut(s) 500
BssMI GATC 3 cut(s) 258, 453, 634
Bst2UI CCWGG 3 cut(s) 203, 480, 502
Bst4CI ACNGT 2 cut(s) 440, 580
BstBAI YACGTR 1 cut(s) 63
BstBI TTCGAA 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 492
BstF5I GGATG 1 cut(s) 240
BstFNI CGCG 3 cut(s) 36, 175, 292
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 3 cut(s) 261, 456, 637
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 3 cut(s) 258, 453, 634
BstMWI GCNNNNNNNGC 2 cut(s) 10, 316
BstNI CCWGG 3 cut(s) 203, 480, 502
BstNSI RCATGY 2 cut(s) 211, 688
BstSCI CCNGG 3 cut(s) 201, 478, 500
BstSFI CTRYAG 1 cut(s) 263
BstUI CGCG 3 cut(s) 36, 175, 292
BstV2I GAAGAC 1 cut(s) 420
BstX2I RGATCY 2 cut(s) 258, 453
BstXI CCANNNNNNTGG 1 cut(s) 63
BstYI RGATCY 2 cut(s) 258, 453
BsuRI GGCC 4 cut(s) 128, 148, 201, 647
BtsCI GGATG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 4 cut(s) 291, 470, 576, 577
Cac8I GCNNGC 1 cut(s) 57
CciI TCATGA 1 cut(s) 709
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 126, 189
CseI GACGC 4 cut(s) 76, 298, 610, 704
Csp6I GTAC 1 cut(s) 75
CspCI CAANNNNNGTGG 2 cut(s) 287, 322
CviAII CATG 4 cut(s) 208, 670, 685, 710
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 1 cut(s) 492
DpnI GATC 3 cut(s) 260, 455, 636
DpnII GATC 3 cut(s) 258, 453, 634
EciI GGCGGA 1 cut(s) 42
Eco147I AGGCCT 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 350
Eco31I GGTCTC 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 189
EcoRII CCWGG 3 cut(s) 201, 478, 500
EcoT22I ATGCAT 1 cut(s) 536
EcoT38I GRGCYC 1 cut(s) 350
FaeI CATG 4 cut(s) 211, 673, 688, 713
FaiI YATR 9 cut(s) 209, 371, 395, 403, 536, 566, 671, 686, 711
FatI CATG 4 cut(s) 207, 669, 684, 709
FauI CCCGC 2 cut(s) 41, 356
FblI GTMKAC 2 cut(s) 442, 624
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 1 cut(s) 247
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 451
GlaI GCGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 4 cut(s) 128, 148, 201, 647
HapII CCGG 1 cut(s) 587
HgaI GACGC 4 cut(s) 76, 298, 610, 704
HhaI GCGC 1 cut(s) 319
Hin1II CATG 4 cut(s) 211, 673, 688, 713
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 2 cut(s) 443, 625
HindII GTYRAC 2 cut(s) 443, 625
HinfI GANTC 2 cut(s) 475, 545
HpaII CCGG 1 cut(s) 587
HphI GGTGA 1 cut(s) 153
Hpy166II GTNNAC 6 cut(s) 66, 436, 443, 625, 664, 694
Hpy188I TCNGA 1 cut(s) 495
Hpy188III TCNNGA 4 cut(s) 418, 525, 542, 710
Hpy8I GTNNAC 6 cut(s) 66, 436, 443, 625, 664, 694
Hpy99I CGWCG 1 cut(s) 626
HpyCH4III ACNGT 2 cut(s) 440, 580
HpyCH4IV ACGT 2 cut(s) 62, 660
HpyCH4V TGCA 2 cut(s) 181, 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 316
HpyF3I CTNAG 1 cut(s) 492
HpySE526I ACGT 2 cut(s) 62, 660
Hsp92II CATG 4 cut(s) 211, 673, 688, 713
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 3 cut(s) 258, 453, 634
LweI GCATC 1 cut(s) 521
MaeI CTAG 1 cut(s) 451
MaeII ACGT 2 cut(s) 62, 660
MaeIII GTNAC 2 cut(s) 141, 286
MalI GATC 3 cut(s) 260, 455, 636
MboI GATC 3 cut(s) 258, 453, 634
MboII GAAGA 4 cut(s) 409, 420, 540, 610
MflI RGATCY 2 cut(s) 258, 453
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 5 cut(s) 17, 154, 276, 322, 354
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 3 cut(s) 202, 510, 606
Mph1103I ATGCAT 1 cut(s) 536
MseI TTAA 1 cut(s) 512
MslI CAYNNNNRTG 2 cut(s) 139, 689
MspI CCGG 1 cut(s) 587
MspR9I CCNGG 3 cut(s) 203, 480, 502
MvaI CCWGG 3 cut(s) 203, 480, 502
MvnI CGCG 3 cut(s) 36, 175, 292
MwoI GCNNNNNNNGC 2 cut(s) 10, 316
NdeII GATC 3 cut(s) 258, 453, 634
NlaIII CATG 4 cut(s) 211, 673, 688, 713
NlaIV GGNNCC 1 cut(s) 215
NmuCI GTSAC 2 cut(s) 141, 286
NsiI ATGCAT 1 cut(s) 536
NspI RCATGY 2 cut(s) 211, 688
NspV TTCGAA 1 cut(s) 592
OliI CACNNNNGTG 1 cut(s) 139
PagI TCATGA 1 cut(s) 709
PceI AGGCCT 1 cut(s) 201
PciI ACATGT 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PfeI GAWTC 1 cut(s) 545
PflFI GACNNNGTC 1 cut(s) 424
PflMI CCANNNNNTGG 1 cut(s) 507
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 483
PpsI GAGTC 1 cut(s) 483
Ppu21I YACGTR 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 189
PscI ACATGT 1 cut(s) 684
Psp5II RGGWCCY 1 cut(s) 189
Psp6I CCWGG 3 cut(s) 201, 478, 500
PspGI CCWGG 3 cut(s) 201, 478, 500
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 2 cut(s) 126, 189
PspPPI RGGWCCY 1 cut(s) 189
PsuI RGATCY 2 cut(s) 258, 453
PsyI GACNNNGTC 1 cut(s) 424
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
RseI CAYNNNNRTG 2 cut(s) 139, 689
SalI GTCGAC 2 cut(s) 441, 623
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 3 cut(s) 258, 453, 634
Sau96I GGNCC 2 cut(s) 126, 189
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 3 cut(s) 203, 480, 502
SduI GDGCHC 1 cut(s) 350
SfaNI GCATC 1 cut(s) 521
SfcI CTRYAG 1 cut(s) 263
SfuI TTCGAA 1 cut(s) 592
SinI GGWCC 1 cut(s) 189
SmiMI CAYNNNNRTG 2 cut(s) 139, 689
Sse9I AATT 5 cut(s) 17, 154, 276, 322, 354
SseBI AGGCCT 1 cut(s) 201
SsiI CCGC 8 cut(s) 4, 34, 53, 129, 175, 211, 244, 363
SspMI CTAG 1 cut(s) 451
StuI AGGCCT 1 cut(s) 201
StyD4I CCNGG 3 cut(s) 201, 478, 500
TaaI ACNGT 2 cut(s) 440, 580
TaiI ACGT 2 cut(s) 65, 663
TaqI TCGA 5 cut(s) 194, 442, 524, 592, 624
TasI AATT 5 cut(s) 17, 154, 276, 322, 354
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TscAI CASTG 4 cut(s) 291, 470, 577, 583
TseFI GTSAC 2 cut(s) 141, 286
Tsp45I GTSAC 2 cut(s) 141, 286
TspDTI ATGAA 3 cut(s) 350, 410, 502
TspGWI ACGGA 1 cut(s) 421
TspRI CASTG 4 cut(s) 291, 470, 577, 583
Tth111I GACNNNGTC 1 cut(s) 424
Van91I CCANNNNNTGG 1 cut(s) 507
VpaK11BI GGWCC 1 cut(s) 189
XapI RAATTY 1 cut(s) 276
XceI RCATGY 2 cut(s) 211, 688
XmiI GTMKAC 2 cut(s) 442, 624
XspI CTAG 1 cut(s) 451
Zsp2I ATGCAT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.