Rmu_co8415559.1_g000002

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8415559.1
Physical Location & Seq
Forward (+)
872 .. 1372
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8415559.1_g000002.1.cds

Sequence Viewer

Length: 501 bp
atggattacgacctcccagaagaagggatagaggccttccactcgctgtacgaaagactatcatcatacttagtggaaaaagaggcctacgatcgagtcgcgaccttagaggccattaatgaagagctctctgatcgggaacaaggagatgaggtagatattcagctcgcccaggtagcgctggacgatacacctcttaaagtcagagaccctaccgagaaggtcaatcttggaacagcaaatgaatctatggaagtggctatcagtgcttacttagagcctagcgagaaacagaggctcattgacttgttactagagtttaaagactgtttcgatgagaagtatgaagacatggtcggcctgtcaccagacttggtttgccatcaactgccaacactccctgacaagtggcctgtgaaacaagagccgcgaagaatgaattcagaaacccaagtcctcgtcaaggaggaagtcgaaaaaatgcataaatcaggcattatc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

167

Amino Acids

19.2

Weight (kDa)

4.37

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 101, 430
AciI CCGC 1 cut(s) 428
AcsI RAATTY 1 cut(s) 439
AfaI GTAC 1 cut(s) 50
AfeI AGCGCT 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 23, 463
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 127, 166
AluI AGCT 2 cut(s) 127, 166
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 201
Aor51HI AGCGCT 1 cut(s) 180
AoxI GGCC 5 cut(s) 33, 84, 111, 358, 410
ApoI RAATTY 1 cut(s) 439
AseI ATTAAT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 439
AspLEI GCGC 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 357
BanII GRGCYC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 129
BccI CCATC 1 cut(s) 390
BciT130I CCWGG 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 2 cut(s) 282, 314
BfoI RGCGCY 1 cut(s) 182
BisI GCNGC 1 cut(s) 428
BlsI GCNGC 1 cut(s) 429
Bme1390I CCNGG 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 463
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 23, 463
Bsh1236I CGCG 2 cut(s) 101, 430
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 5 cut(s) 35, 86, 113, 360, 412
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 23, 463
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 5 cut(s) 35, 86, 113, 360, 412
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 91, 133
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 1 cut(s) 428
BspANI GGCC 5 cut(s) 35, 86, 113, 360, 412
BspFNI CGCG 2 cut(s) 101, 430
BspQI GCTCTTC 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 91, 133
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 329
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 3 cut(s) 70, 106, 274
BstENI CCTNNNNNAGG 1 cut(s) 461
BstFNI CGCG 2 cut(s) 101, 430
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 2 cut(s) 94, 136
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 2 cut(s) 91, 133
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 176, 266
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstUI CGCG 2 cut(s) 101, 430
BstV2I GAAGAC 1 cut(s) 354
BsuRI GGCC 5 cut(s) 35, 86, 113, 360, 412
BtsIMutI CAGTG 1 cut(s) 271
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 49
CviAII CATG 1 cut(s) 352
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 3 cut(s) 70, 106, 274
DpnI GATC 2 cut(s) 93, 135
DpnII GATC 2 cut(s) 91, 133
DraI TTTAAA 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 127
Eco147I AGGCCT 2 cut(s) 35, 86
Eco24I GRGCYC 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 201
Eco47III AGCGCT 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoNI CCTNNNNNAGG 1 cut(s) 461
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 1 cut(s) 355
FaiI YATR 5 cut(s) 67, 251, 345, 353, 486
FatI CATG 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 428
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 428
FspBI CTAG 2 cut(s) 282, 314
GlaI GCGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 428
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 5 cut(s) 35, 86, 113, 360, 412
HhaI GCGC 1 cut(s) 181
Hin1II CATG 1 cut(s) 355
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 2 cut(s) 96, 245
HphI GGTGA 1 cut(s) 357
Hpy188I TCNGA 3 cut(s) 133, 206, 445
Hpy188III TCNNGA 2 cut(s) 100, 137
HpyAV CCTTC 3 cut(s) 17, 46, 214
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 1 cut(s) 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 266
HpyF3I CTNAG 3 cut(s) 70, 106, 274
Hsp92II CATG 1 cut(s) 355
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 2 cut(s) 91, 133
LguI GCTCTTC 1 cut(s) 117
LpnPI CCDG 9 cut(s) 30, 158, 167, 185, 374, 381, 414, 426, 477
MaeI CTAG 2 cut(s) 282, 314
MaeIII GTNAC 2 cut(s) 309, 363
MalI GATC 2 cut(s) 93, 135
MboI GATC 2 cut(s) 91, 133
MboII GAAGA 4 cut(s) 32, 134, 359, 444
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 1 cut(s) 439
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 9 cut(s) 23, 25, 76, 103, 145, 204, 288, 460, 467
Mph1103I ATGCAT 1 cut(s) 486
MroXI GAANNNNTTC 1 cut(s) 439
MseI TTAA 3 cut(s) 117, 198, 321
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 2 cut(s) 101, 430
MwoI GCNNNNNNNGC 2 cut(s) 176, 266
NdeII GATC 2 cut(s) 91, 133
NlaIII CATG 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 363
NruI TCGCGA 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 486
PceI AGGCCT 2 cut(s) 35, 86
PciSI GCTCTTC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 439
PfeI GAWTC 1 cut(s) 245
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 1 cut(s) 429
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PshBI ATTAAT 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PsyI GACNNNGTC 1 cut(s) 353
PvuI CGATCG 1 cut(s) 94
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SacI GAGCTC 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 3 cut(s) 117, 198, 321
SatI GCNGC 1 cut(s) 428
Sau3AI GATC 2 cut(s) 91, 133
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 129
SetI ASST 8 cut(s) 15, 107, 129, 156, 168, 177, 196, 225
Sse9I AATT 1 cut(s) 439
SseBI AGGCCT 2 cut(s) 35, 86
SsiI CCGC 1 cut(s) 428
SspMI CTAG 2 cut(s) 282, 314
SstI GAGCTC 1 cut(s) 129
StuI AGGCCT 2 cut(s) 35, 86
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 329
TaqI TCGA 3 cut(s) 94, 333, 474
TasI AATT 1 cut(s) 439
TauI GCSGC 1 cut(s) 430
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 3 cut(s) 117, 198, 321
Tru9I TTAA 3 cut(s) 117, 198, 321
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 363
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 4 cut(s) 135, 258, 360, 452
TspRI CASTG 1 cut(s) 271
Tth111I GACNNNGTC 1 cut(s) 353
VspI ATTAAT 1 cut(s) 117
XagI CCTNNNNNAGG 1 cut(s) 461
XapI RAATTY 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 439
XspI CTAG 2 cut(s) 282, 314
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.