Rmu_sc0003737.1_g000023

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003737.1
OG0000176
Physical Location & Seq
Reverse (-)
93160 .. 93711
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003737.1_g000023.1.cds

Sequence Viewer

Length: 492 bp
atggattacgaccgctcagaggaggggatagaggccttccactcgatatacgaacaactgttatcatacttggtggaaaaagaggcttatgatcgaatcgcgaccttggaggtcgtcaatgaggagctctctgatcaagagcgagaggatgaaatagatattcagcttgctccagcagcgctggacgatacgcctcttaaagtcagagaccctactgaaaaggttaatctgggaacagtggacgagcctatggaagtggctatcaattgctttgcggagaagtatgaagacatgcgcggcctgtcaccggacttggtttgtcatcaactaccaacactccctgataagaggaccgtgaagcaagaaccgcgacgaatgaattcagagacccaggttctcgtcaaagaggaggtcgaaaaaatgcataaatcaggcattatcaaggttgccaaatacaatcagtggccgtccgcaagaagaatggcaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

163

Amino Acids

18.88

Weight (kDa)

4.71

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 15
AccII CGCG 3 cut(s) 101, 297, 370
AciI CCGC 5 cut(s) 13, 275, 297, 368, 471
AcoI YGGCCR 1 cut(s) 464
AcsI RAATTY 1 cut(s) 379
AfeI AGCGCT 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 19, 307
AjnI CCWGG 1 cut(s) 390
AluBI AGCT 2 cut(s) 127, 166
AluI AGCT 2 cut(s) 127, 166
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 2 cut(s) 201, 380
Aor51HI AGCGCT 1 cut(s) 180
AoxI GGCC 3 cut(s) 33, 298, 464
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 379
ArsI GACNNNNNNTTYG 2 cut(s) 396, 428
Asp700I GAANNNNTTC 1 cut(s) 379
AspLEI GCGC 2 cut(s) 181, 297
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 297
AvaII GGWCC 1 cut(s) 351
BanII GRGCYC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 451
BciT130I CCWGG 1 cut(s) 392
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 201, 380
BfoI RGCGCY 1 cut(s) 182
BisI GCNGC 2 cut(s) 177, 298
BlsI GCNGC 2 cut(s) 178, 299
Bme1390I CCNGG 1 cut(s) 392
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 351
BmrFI CCNGG 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 294
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpmI CTGGAG 1 cut(s) 156
BsaI GGTCTC 2 cut(s) 201, 380
BsaJI CCNNGG 2 cut(s) 105, 390
BsaWI WCCGGW 1 cut(s) 307
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 307
BseBI CCWGG 1 cut(s) 392
BseDI CCNNGG 2 cut(s) 105, 390
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 2 cut(s) 19, 307
BseMII CTCAG 1 cut(s) 30
BseRI GAGGAG 3 cut(s) 35, 137, 422
BseXI GCAGC 1 cut(s) 188
Bsh1236I CGCG 3 cut(s) 101, 297, 370
Bsh1285I CGRYCG 1 cut(s) 13
BshFI GGCC 3 cut(s) 35, 300, 466
BsiEI CGRYCG 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 19, 307
BsmAI GTCTC 2 cut(s) 201, 380
BsnI GGCC 3 cut(s) 35, 300, 466
Bso31I GGTCTC 2 cut(s) 201, 380
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 91, 133
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 5 cut(s) 13, 275, 297, 368, 471
BspANI GGCC 3 cut(s) 35, 300, 466
BspCNI CTCAG 1 cut(s) 29
BspFNI CGCG 3 cut(s) 101, 297, 370
BspTNI GGTCTC 2 cut(s) 201, 380
BsrBI CCGCTC 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 105, 390
BssMI GATC 2 cut(s) 91, 133
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 3 cut(s) 60, 238, 355
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 3 cut(s) 101, 297, 370
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 2 cut(s) 181, 297
BstKTI GATC 2 cut(s) 94, 136
BstMAI GTCTC 2 cut(s) 201, 380
BstMBI GATC 2 cut(s) 91, 133
BstMCI CGRYCG 1 cut(s) 13
BstMWI GCNNNNNNNGC 2 cut(s) 176, 367
BstNI CCWGG 1 cut(s) 392
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 390
BstUI CGCG 3 cut(s) 101, 297, 370
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 294
BsuRI GGCC 3 cut(s) 35, 300, 466
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 243, 467
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 2 cut(s) 181, 297
Cfr13I GGNCC 1 cut(s) 351
CviAII CATG 1 cut(s) 292
CviJI RGCY 8 cut(s) 35, 86, 127, 166, 247, 260, 300, 466
CviKI_1 RGCY 8 cut(s) 35, 86, 127, 166, 247, 260, 300, 466
DdeI CTNAG 1 cut(s) 16
DpnI GATC 2 cut(s) 93, 135
DpnII GATC 2 cut(s) 91, 133
EaeI YGGCCR 1 cut(s) 464
Ecl136II GAGCTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 105
Eco147I AGGCCT 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 129
Eco31I GGTCTC 2 cut(s) 201, 380
Eco47I GGWCC 1 cut(s) 351
Eco47III AGCGCT 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 295
FaiI YATR 7 cut(s) 49, 67, 90, 251, 285, 293, 426
FatI CATG 1 cut(s) 291
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 177, 298
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 177, 298
GlaI GCGC 2 cut(s) 180, 296
GluI GCNGC 2 cut(s) 177, 298
GsuI CTGGAG 1 cut(s) 156
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 3 cut(s) 35, 300, 466
HapII CCGG 1 cut(s) 308
HhaI GCGC 2 cut(s) 181, 297
Hin1II CATG 1 cut(s) 295
Hin6I GCGC 2 cut(s) 179, 295
HinP1I GCGC 2 cut(s) 179, 295
HinfI GANTC 1 cut(s) 96
HpaII CCGG 1 cut(s) 308
HphI GGTGA 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 4 cut(s) 19, 133, 206, 385
Hpy188III TCNNGA 2 cut(s) 100, 137
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 1 cut(s) 375
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 3 cut(s) 60, 238, 355
HpyCH4V TGCA 1 cut(s) 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 367
HpyF3I CTNAG 1 cut(s) 16
Hsp92II CATG 1 cut(s) 295
HspAI GCGC 2 cut(s) 179, 295
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 91, 133
LmnI GCTCC 2 cut(s) 124, 175
LpnPI CCDG 9 cut(s) 167, 186, 215, 314, 321, 354, 377, 404, 417
Lsp1109I GCAGC 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 303
MalI GATC 2 cut(s) 93, 135
MbiI CCGCTC 1 cut(s) 15
MboI GATC 2 cut(s) 91, 133
MboII GAAGA 2 cut(s) 299, 489
MfeI CAATTG 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 2 cut(s) 265, 379
Mph1103I ATGCAT 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 379
MseI TTAA 2 cut(s) 198, 225
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 392
MunI CAATTG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 392
MvnI CGCG 3 cut(s) 101, 297, 370
MwoI GCNNNNNNNGC 2 cut(s) 176, 367
NdeII GATC 2 cut(s) 91, 133
NlaIII CATG 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 303
NruI TCGCGA 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 426
NspI RCATGY 1 cut(s) 295
PceI AGGCCT 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 2 cut(s) 178, 299
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 390
PspGI CCWGG 1 cut(s) 390
PspPI GGNCC 1 cut(s) 351
RruI TCGCGA 1 cut(s) 101
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 198, 225
SatI GCNGC 2 cut(s) 177, 298
Sau3AI GATC 2 cut(s) 91, 133
Sau96I GGNCC 1 cut(s) 351
ScrFI CCNGG 1 cut(s) 392
SduI GDGCHC 1 cut(s) 129
SetI ASST 8 cut(s) 107, 114, 129, 168, 225, 396, 414, 447
SinI GGWCC 1 cut(s) 351
Sse9I AATT 2 cut(s) 265, 379
SseBI AGGCCT 1 cut(s) 35
SsiI CCGC 5 cut(s) 13, 275, 297, 368, 471
SstI GAGCTC 1 cut(s) 129
StuI AGGCCT 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 390
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 3 cut(s) 60, 238, 355
TaqI TCGA 3 cut(s) 44, 94, 414
TasI AATT 2 cut(s) 265, 379
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 2 cut(s) 198, 225
Tru9I TTAA 2 cut(s) 198, 225
TscAI CASTG 2 cut(s) 243, 467
TseFI GTSAC 1 cut(s) 303
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 3 cut(s) 165, 300, 392
TspRI CASTG 2 cut(s) 243, 467
VpaK11BI GGWCC 1 cut(s) 351
XapI RAATTY 1 cut(s) 379
XceI RCATGY 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 379
Zsp2I ATGCAT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.