Rmu_sc0001069.1_g000038

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001069.1
OG0000176
Physical Location & Seq
Forward (+)
150593 .. 150883
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001069.1_g000038.1.cds

Sequence Viewer

Length: 291 bp
atggattacgaccttccagaggaggggatagaggccttccactctttgtacgaaaggatgtcctcgtacttagtggagaaagaggcctacgatcgagtcgcgaccttagaaattgttaacgaggagttctctgaccatgaagaggaagaagaagagattcaacttgccccagcgacattggatgacacgcctccgaaggttagggaccctactgagaaagtcaatttggcgacaactgatgagcccatggaagcggctatcagcacctacttagagcctagcgagaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

96

Amino Acids

11.03

Weight (kDa)

4.05

Isoelectric Point (pI)

66.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 101
AciI CCGC 1 cut(s) 254
AfaI GTAC 2 cut(s) 50, 68
AfiI CCNNNNNNNGG 3 cut(s) 19, 23, 142
AgsI TTSAA 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AoxI GGCC 2 cut(s) 33, 84
Asp700I GAANNNNTTC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 205
AvaII GGWCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 246
BfaI CTAG 1 cut(s) 279
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 206, 207
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 23, 142
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 63, 187
BseLI CCNNNNNNNGG 3 cut(s) 19, 23, 142
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 2 cut(s) 35, 137
BseYI CCCAGC 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 101
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 2 cut(s) 35, 86
BsiEI CGRYCG 1 cut(s) 94
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 3 cut(s) 19, 23, 142
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 2 cut(s) 35, 86
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 1 cut(s) 91
Bsp19I CCATGG 1 cut(s) 246
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 1 cut(s) 254
BspANI GGCC 2 cut(s) 35, 86
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 206, 207
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 91
BssT1I CCWWGG 1 cut(s) 246
Bst6I CTCTTC 2 cut(s) 135, 147
BstDEI CTNAG 4 cut(s) 70, 106, 213, 271
BstDSI CCRYGG 1 cut(s) 246
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 63, 187
BstFNI CGCG 1 cut(s) 101
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMCI CGRYCG 1 cut(s) 94
BstUI CGCG 1 cut(s) 101
BsuRI GGCC 2 cut(s) 35, 86
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 63, 187
BtuMI TCGCGA 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 2 cut(s) 49, 67
CviAII CATG 2 cut(s) 137, 247
CviJI RGCY 5 cut(s) 35, 86, 244, 257, 277
CviKI_1 RGCY 5 cut(s) 35, 86, 244, 257, 277
CviQI GTAC 2 cut(s) 49, 67
DdeI CTNAG 4 cut(s) 70, 106, 213, 271
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 135, 147
EarI CTCTTC 2 cut(s) 135, 147
Eco130I CCWWGG 1 cut(s) 246
Eco147I AGGCCT 2 cut(s) 35, 86
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 2 cut(s) 140, 250
FaiI YATR 2 cut(s) 138, 248
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 136, 246
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 2 cut(s) 70, 194
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 255
GsaI CCCAGC 1 cut(s) 173
HaeIII GGCC 2 cut(s) 35, 86
Hin1II CATG 2 cut(s) 140, 250
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 2 cut(s) 96, 157
HpaI GTTAAC 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 133, 195
Hpy188III TCNNGA 2 cut(s) 17, 100
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 3 cut(s) 23, 46, 190
HpyF3I CTNAG 4 cut(s) 70, 106, 213, 271
Hsp92II CATG 2 cut(s) 140, 250
KflI GGGWCCC 1 cut(s) 205
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 2 cut(s) 30, 183
MaeI CTAG 1 cut(s) 279
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 4 cut(s) 152, 158, 161, 164
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 111, 223
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 8 cut(s) 13, 16, 25, 73, 76, 115, 136, 201
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 1 cut(s) 117
MvnI CGCG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 246
NdeII GATC 1 cut(s) 91
NlaIII CATG 2 cut(s) 140, 250
NlaIV GGNNCC 2 cut(s) 206, 207
NruI TCGCGA 1 cut(s) 101
PceI AGGCCT 2 cut(s) 35, 86
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 256
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 206, 207
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
PvuI CGATCG 1 cut(s) 94
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 2 cut(s) 50, 68
RsaNI GTAC 2 cut(s) 49, 67
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 105
SduI GDGCHC 1 cut(s) 246
SetI ASST 4 cut(s) 15, 107, 201, 269
SinI GGWCC 1 cut(s) 205
Sse9I AATT 2 cut(s) 111, 223
SseBI AGGCCT 2 cut(s) 35, 86
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 279
StuI AGGCCT 2 cut(s) 35, 86
StyI CCWWGG 1 cut(s) 246
TaqI TCGA 1 cut(s) 94
TasI AATT 2 cut(s) 111, 223
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 205
XagI CCTNNNNNAGG 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.