Rw6G016740

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
33008656 .. 33009405
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016740.1

Sequence Viewer

Length: 624 bp
ATGGATTACGACCTCCCAGGGGAAGGAATAGAGGCCTTCCACTCGCTGTACGAAAGACTATCATCGTACTTAGTGGAAAAAGAGGCATATGATCGAGTCGCGACCTTAGAGGCCATCAATGAAGAATTCTCTGATCAAGAACAAGAGGATGAGCCTAGCGAGAAACAGAGCCTCATTGACTTATTGCTAGAATTCAAAGACTGTTTTGCGGAGAAGTATGAAGACATGCCTGGCCTGTCACCGGACTTGGTTTGCCATCAACTGCCAACACTCCCTGACAAGAGGCCTGTGAAACAAGAACTGCGAAGAATGAATTCAGAAATCCAAGTCCTCGTCAAGGAGGAAGTCGAAAAGATGCATAAATCGGGCATTATCAAGATAGCCAAATACAATCAGTGGCAATCTAATATAGTGCCTGTTCGCAAGAAGAATGGAAAGATGAGGGTCTGCGTAGATTACAGAGGCCTTAATCTCGCTACACCTAAAGATGTCTACCCCATGCCGGTCGCGGATATGTTAGTAGACGCCGTAGCAGGACATGAATTGTTGTCCTTCATGGACGGCACCGCAGGGTATCACCAGATTCCGGTCGCAGAAGAAGGCACACATAAAACTGCGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

207

Amino Acids

23.66

Weight (kDa)

4.86

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 563
AccI GTMKAC 2 cut(s) 492, 522
AccII CGCG 2 cut(s) 101, 509
AciI CCGC 3 cut(s) 209, 509, 567
AcsI RAATTY 3 cut(s) 125, 191, 313
AcyI GRCGYC 1 cut(s) 525
AfaI GTAC 2 cut(s) 50, 68
AfiI CCNNNNNNNGG 6 cut(s) 19, 23, 241, 337, 502, 586
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 2 cut(s) 16, 229
AoxI GGCC 5 cut(s) 33, 111, 232, 284, 463
ApoI RAATTY 3 cut(s) 125, 191, 313
Asp700I GAANNNNTTC 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 231, 569
BanI GGYRCC 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 228
BccI CCATC 2 cut(s) 122, 264
BceAI ACGGC 2 cut(s) 512, 577
BciT130I CCWGG 2 cut(s) 18, 231
BclI TGATCA 1 cut(s) 133
BfaI CTAG 3 cut(s) 156, 188, 622
Bme1390I CCNGG 2 cut(s) 18, 231
BmiI GGNNCC 1 cut(s) 565
BmrFI CCNGG 2 cut(s) 18, 231
BmsI GCATC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 16, 17
BsaWI WCCGGW 2 cut(s) 241, 586
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 23, 241, 337, 502, 586
Bse118I RCCGGY 1 cut(s) 502
BseBI CCWGG 2 cut(s) 18, 231
BseDI CCNNGG 2 cut(s) 16, 17
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 6 cut(s) 19, 23, 241, 337, 502, 586
Bsh1236I CGCG 2 cut(s) 101, 509
Bsh1285I CGRYCG 2 cut(s) 507, 591
BshFI GGCC 5 cut(s) 35, 113, 234, 286, 465
BshNI GGYRCC 1 cut(s) 563
BsiEI CGRYCG 2 cut(s) 507, 591
BsiSI CCGG 3 cut(s) 242, 503, 587
BslI CCNNNNNNNGG 6 cut(s) 19, 23, 241, 337, 502, 586
BsnI GGCC 5 cut(s) 35, 113, 234, 286, 465
Bsp143I GATC 2 cut(s) 91, 133
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 3 cut(s) 209, 509, 567
BspANI GGCC 5 cut(s) 35, 113, 234, 286, 465
BspFNI CGCG 2 cut(s) 101, 509
BspLI GGNNCC 1 cut(s) 565
BspT107I GGYRCC 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 502
BssAI RCCGGY 1 cut(s) 502
BssECI CCNNGG 2 cut(s) 16, 17
BssMI GATC 2 cut(s) 91, 133
BssNI GRCGYC 1 cut(s) 525
Bst2UI CCWGG 2 cut(s) 18, 231
Bst4CI ACNGT 1 cut(s) 203
BstACI GRCGYC 1 cut(s) 525
BstDEI CTNAG 2 cut(s) 70, 106
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 2 cut(s) 101, 509
BstKTI GATC 2 cut(s) 94, 136
BstMBI GATC 2 cut(s) 91, 133
BstMCI CGRYCG 2 cut(s) 507, 591
BstNI CCWGG 2 cut(s) 18, 231
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 16, 229
BstUI CGCG 2 cut(s) 101, 509
BstV2I GAAGAC 1 cut(s) 228
BsuRI GGCC 5 cut(s) 35, 113, 234, 286, 465
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 401
BtuMI TCGCGA 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 502
CseI GACGC 1 cut(s) 533
Csp6I GTAC 2 cut(s) 49, 67
CviAII CATG 4 cut(s) 226, 499, 539, 556
CviJI RGCY 8 cut(s) 35, 113, 154, 171, 234, 286, 383, 465
CviKI_1 RGCY 8 cut(s) 35, 113, 154, 171, 234, 286, 383, 465
CviQI GTAC 2 cut(s) 49, 67
DdeI CTNAG 2 cut(s) 70, 106
DpnI GATC 2 cut(s) 93, 135
DpnII GATC 2 cut(s) 91, 133
Eco147I AGGCCT 3 cut(s) 35, 286, 465
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoRI GAATTC 3 cut(s) 125, 191, 313
EcoRII CCWGG 2 cut(s) 16, 229
EcoT22I ATGCAT 1 cut(s) 360
FaeI CATG 4 cut(s) 229, 502, 542, 559
FatI CATG 4 cut(s) 225, 498, 538, 555
FauNDI CATATG 1 cut(s) 88
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 2 cut(s) 492, 522
FokI GGATG 1 cut(s) 161
FspBI CTAG 3 cut(s) 156, 188, 622
HaeIII GGCC 5 cut(s) 35, 113, 234, 286, 465
HapII CCGG 3 cut(s) 242, 503, 587
HgaI GACGC 1 cut(s) 533
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 4 cut(s) 229, 502, 542, 559
HinfI GANTC 2 cut(s) 96, 583
HpaII CCGG 3 cut(s) 242, 503, 587
HphI GGTGA 2 cut(s) 231, 569
Hpy166II GTNNAC 2 cut(s) 493, 523
Hpy188I TCNGA 2 cut(s) 133, 319
Hpy188III TCNNGA 3 cut(s) 100, 137, 376
Hpy8I GTNNAC 2 cut(s) 493, 523
HpyAV CCTTC 4 cut(s) 17, 46, 562, 593
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 1 cut(s) 358
HpyF3I CTNAG 2 cut(s) 70, 106
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 4 cut(s) 229, 502, 542, 559
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 91, 133
LweI GCATC 1 cut(s) 345
MaeI CTAG 3 cut(s) 156, 188, 622
MaeIII GTNAC 1 cut(s) 237
MalI GATC 2 cut(s) 93, 135
MboI GATC 2 cut(s) 91, 133
MboII GAAGA 5 cut(s) 134, 233, 318, 439, 608
MluCI AATT 4 cut(s) 125, 191, 313, 542
MlyI GAGTC 1 cut(s) 105
Mph1103I ATGCAT 1 cut(s) 360
MroXI GAANNNNTTC 1 cut(s) 313
MseI TTAA 1 cut(s) 468
MspI CCGG 3 cut(s) 242, 503, 587
MspR9I CCNGG 2 cut(s) 18, 231
MvaI CCWGG 2 cut(s) 18, 231
MvnI CGCG 2 cut(s) 101, 509
NdeI CATATG 1 cut(s) 88
NdeII GATC 2 cut(s) 91, 133
NlaIII CATG 4 cut(s) 229, 502, 542, 559
NlaIV GGNNCC 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 237
NruI TCGCGA 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 360
NspI RCATGY 1 cut(s) 229
PasI CCCWGGG 1 cut(s) 17
PceI AGGCCT 3 cut(s) 35, 286, 465
PdmI GAANNNNTTC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 583
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Psp6I CCWGG 2 cut(s) 16, 229
PspGI CCWGG 2 cut(s) 16, 229
PspN4I GGNNCC 1 cut(s) 565
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 2 cut(s) 50, 68
RsaNI GTAC 2 cut(s) 49, 67
SaqAI TTAA 1 cut(s) 468
Sau3AI GATC 2 cut(s) 91, 133
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 18, 231
SetI ASST 3 cut(s) 15, 107, 484
SfaNI GCATC 1 cut(s) 345
Sse9I AATT 4 cut(s) 125, 191, 313, 542
SseBI AGGCCT 3 cut(s) 35, 286, 465
SsiI CCGC 3 cut(s) 209, 509, 567
SspMI CTAG 3 cut(s) 156, 188, 622
StuI AGGCCT 3 cut(s) 35, 286, 465
StyD4I CCNGG 2 cut(s) 16, 229
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 2 cut(s) 94, 348
TasI AATT 4 cut(s) 125, 191, 313, 542
TfiI GAWTC 1 cut(s) 583
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 1 cut(s) 401
TseFI GTSAC 1 cut(s) 237
Tsp45I GTSAC 1 cut(s) 237
TspDTI ATGAA 5 cut(s) 135, 234, 326, 544, 555
TspRI CASTG 1 cut(s) 401
XagI CCTNNNNNAGG 1 cut(s) 335
XapI RAATTY 3 cut(s) 125, 191, 313
XceI RCATGY 1 cut(s) 229
XmiI GTMKAC 2 cut(s) 492, 522
XmnI GAANNNNTTC 1 cut(s) 313
XspI CTAG 3 cut(s) 156, 188, 622
Zsp2I ATGCAT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.