Rw3G005560

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000176
Physical Location & Seq
Reverse (-)
4604375 .. 4605079
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G005560.1

Sequence Viewer

Length: 618 bp
ATGGATCATGACCTCCCAGAAGAAGAGGTAGAGGCCTTTCATTCTTTGTATAATAGATTATCTTCATATCTAATTGAAAAGGAGGCTTACGAACAAATTGCAACATTGGAATACATCGACGAAAAGTTCTTTGATCAAGGAGAGGAAGAAAAGCCCATTCGATTAGCTCCAGCAGCAGAAAATTTAGAGCCTGATGAAAGACAGGGGCTCATTGACTTATTACAGGAGTATAAGGATTGCTTCGTGGAGAAATATGAAGACATGCCAGGTTTAGAGCCTGACTTAATCTGCCACAAGCTGCCAACTATCCCAAACCAAAAGCCGGTGCGGCAGGAGTCCAGGTGGATGAATTCAAAAACCCACGTTTTCGTGAAAGAAGAAGTAGAGAAAATGCATAAGTCAGGAATCATCAGGGTCGCTAAGTACAACCAGTGGCTATCCAATGTTGTTCCAGTCCGAAAGAAGAATGGAAAAATGAGAGTTTGCGTCGATTACCGTGACCTCAATAACGCTACCCCTAAAGATGTCTACCCCATTCCAGTTGCGGACGTGTTGGTAGACGCAGTAGCAGGTCACGAACTCTTGTGTTTTATGGATGGAACCGCCGGTTATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

205

Amino Acids

23.81

Weight (kDa)

4.94

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 560
AccI GTMKAC 2 cut(s) 528, 558
AciI CCGC 3 cut(s) 328, 545, 603
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 181, 349
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 322
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 2 cut(s) 77, 354
AjiI CACGTC 1 cut(s) 550
AjnI CCWGG 2 cut(s) 265, 338
AluBI AGCT 2 cut(s) 167, 298
AluI AGCT 2 cut(s) 167, 298
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 173, 298
ApoI RAATTY 2 cut(s) 181, 349
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 185, 285
BccI CCATC 1 cut(s) 590
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 2 cut(s) 267, 340
BclI TGATCA 1 cut(s) 133
BfuAI ACCTGC 1 cut(s) 560
BglI GCCNNNNNGGC 1 cut(s) 328
BisI GCNGC 3 cut(s) 174, 299, 329
BlsI GCNGC 3 cut(s) 175, 300, 330
Bme1390I CCNGG 2 cut(s) 267, 340
BmgBI CACGTC 1 cut(s) 550
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 2 cut(s) 267, 340
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse118I RCCGGY 2 cut(s) 322, 605
Bse1I ACTGG 3 cut(s) 430, 452, 539
BseBI CCWGG 2 cut(s) 267, 340
BseGI GGATG 2 cut(s) 351, 601
BseLI CCNNNNNNNGG 1 cut(s) 322
BseNI ACTGG 3 cut(s) 430, 452, 539
BseXI GCAGC 2 cut(s) 185, 285
BshFI GGCC 1 cut(s) 35
BsiSI CCGG 2 cut(s) 323, 606
BslI CCNNNNNNNGG 1 cut(s) 322
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 4, 133
BspACI CCGC 3 cut(s) 328, 545, 603
BspANI GGCC 1 cut(s) 35
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 601
BspMI ACCTGC 1 cut(s) 560
BspPI GGATC 1 cut(s) 12
BsrFI RCCGGY 2 cut(s) 322, 605
BsrI ACTGG 3 cut(s) 430, 452, 539
BssAI RCCGGY 2 cut(s) 322, 605
BssMI GATC 2 cut(s) 4, 133
Bst2UI CCWGG 2 cut(s) 267, 340
Bst4CI ACNGT 1 cut(s) 497
Bst6I CTCTTC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 420
BstF5I GGATG 2 cut(s) 351, 601
BstKTI GATC 2 cut(s) 7, 136
BstMBI GATC 2 cut(s) 4, 133
BstMWI GCNNNNNNNGC 2 cut(s) 173, 328
BstNI CCWGG 2 cut(s) 267, 340
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 2 cut(s) 265, 338
BstV1I GCAGC 2 cut(s) 185, 285
BstV2I GAAGAC 1 cut(s) 264
BsuRI GGCC 1 cut(s) 35
BtrI CACGTC 1 cut(s) 550
BtsCI GGATG 2 cut(s) 351, 601
BtsIMutI CAGTG 1 cut(s) 437
BveI ACCTGC 1 cut(s) 560
CciI TCATGA 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 322, 605
CseI GACGC 2 cut(s) 475, 569
Csp6I GTAC 1 cut(s) 424
CviAII CATG 2 cut(s) 8, 262
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 1 cut(s) 420
DpnI GATC 2 cut(s) 6, 135
DpnII GATC 2 cut(s) 4, 133
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 210
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 2 cut(s) 265, 338
EcoT22I ATGCAT 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 2 cut(s) 11, 265
FaiI YATR 8 cut(s) 9, 51, 67, 231, 255, 263, 396, 593
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FatI CATG 2 cut(s) 7, 261
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 2 cut(s) 528, 558
Fnu4HI GCNGC 3 cut(s) 174, 299, 329
FokI GGATG 2 cut(s) 358, 608
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 3 cut(s) 174, 299, 329
GluI GCNGC 3 cut(s) 174, 299, 329
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 1 cut(s) 35
HapII CCGG 2 cut(s) 323, 606
HgaI GACGC 2 cut(s) 475, 569
Hin1II CATG 2 cut(s) 11, 265
HinfI GANTC 2 cut(s) 335, 405
HpaII CCGG 2 cut(s) 323, 606
Hpy166II GTNNAC 2 cut(s) 529, 559
Hpy188I TCNGA 1 cut(s) 458
Hpy188III TCNNGA 4 cut(s) 8, 370, 402, 575
Hpy8I GTNNAC 2 cut(s) 529, 559
Hpy99I CGWCG 2 cut(s) 122, 491
HpyCH4III ACNGT 1 cut(s) 497
HpyCH4IV ACGT 2 cut(s) 363, 549
HpyCH4V TGCA 2 cut(s) 101, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 328
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 2 cut(s) 363, 549
Hsp92II CATG 2 cut(s) 11, 265
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 4, 133
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 2 cut(s) 185, 285
MaeII ACGT 2 cut(s) 363, 549
MaeIII GTNAC 2 cut(s) 497, 572
MalI GATC 2 cut(s) 6, 135
MboI GATC 2 cut(s) 4, 133
MboII GAAGA 7 cut(s) 32, 35, 54, 158, 269, 389, 475
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 4 cut(s) 72, 96, 181, 349
MlyI GAGTC 1 cut(s) 344
MnlI CCTC 6 cut(s) 19, 23, 25, 76, 136, 512
Mph1103I ATGCAT 1 cut(s) 396
MseI TTAA 1 cut(s) 284
MspI CCGG 2 cut(s) 323, 606
MspR9I CCNGG 2 cut(s) 267, 340
MvaI CCWGG 2 cut(s) 267, 340
MwoI GCNNNNNNNGC 2 cut(s) 173, 328
NdeII GATC 2 cut(s) 4, 133
NlaIII CATG 2 cut(s) 11, 265
NlaIV GGNNCC 1 cut(s) 601
NmuCI GTSAC 2 cut(s) 497, 572
NsiI ATGCAT 1 cut(s) 396
NspI RCATGY 1 cut(s) 265
PagI TCATGA 1 cut(s) 7
PceI AGGCCT 1 cut(s) 35
PfeI GAWTC 1 cut(s) 405
PkrI GCNGC 3 cut(s) 175, 300, 330
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 265, 338
PspGI CCWGG 2 cut(s) 265, 338
PspN4I GGNNCC 1 cut(s) 601
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 3 cut(s) 174, 299, 329
Sau3AI GATC 2 cut(s) 4, 133
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 267, 340
SduI GDGCHC 1 cut(s) 210
Sse9I AATT 4 cut(s) 72, 96, 181, 349
SseBI AGGCCT 1 cut(s) 35
SsiI CCGC 3 cut(s) 328, 545, 603
StuI AGGCCT 1 cut(s) 35
StyD4I CCNGG 2 cut(s) 265, 338
TaaI ACNGT 1 cut(s) 497
TaiI ACGT 2 cut(s) 366, 552
TaqI TCGA 3 cut(s) 117, 160, 489
TasI AATT 4 cut(s) 72, 96, 181, 349
TatI WGTACW 1 cut(s) 423
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 1 cut(s) 405
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TscAI CASTG 1 cut(s) 437
TseFI GTSAC 2 cut(s) 497, 572
TseI GCWGC 2 cut(s) 173, 298
Tsp45I GTSAC 2 cut(s) 497, 572
TspDTI ATGAA 5 cut(s) 29, 54, 210, 270, 362
TspRI CASTG 1 cut(s) 437
XapI RAATTY 2 cut(s) 181, 349
XceI RCATGY 1 cut(s) 265
XmiI GTMKAC 2 cut(s) 528, 558
Zsp2I ATGCAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.