Rmu_sc0002270.1_g000036

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002270.1
OG0000176
Physical Location & Seq
Reverse (-)
141634 .. 141918
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002270.1_g000036.1.cds

Sequence Viewer

Length: 285 bp
atggattacgatcttccagaggaagggatagaggccttccactctttgtacgagagattatcctcgtatatggtggaaaaagaggcctatgatcgaatcgcgaccttggaaatagttaacgaggaactctctgaccatgaagaggaagaggaagacattcagctcgcctcagcagtgttaggcgacacacctcccaaggtcagggaccctactgagaaggtcaatcttagaacaaaagacgagcccatggaagtggctatcagtgcatacttagagcctagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

94

Amino Acids

10.77

Weight (kDa)

4.13

Isoelectric Point (pI)

59.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 101
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 3 cut(s) 23, 142, 201
AluBI AGCT 2 cut(s) 163, 282
AluI AGCT 2 cut(s) 163, 282
AoxI GGCC 2 cut(s) 33, 84
Asp700I GAANNNNTTC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 205
AvaII GGWCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 169
BfaI CTAG 2 cut(s) 279, 283
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 206, 207
BpiI GAAGAC 1 cut(s) 159
BplI GAGNNNNNCTC 2 cut(s) 113, 145
Bpu10I CCTNAGC 1 cut(s) 169
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 105, 195, 246
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 142, 201
Bse8I GATNNNNATC 1 cut(s) 9
BseDI CCNNGG 3 cut(s) 105, 195, 246
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 3 cut(s) 23, 142, 201
BseMII CTCAG 2 cut(s) 183, 204
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 2 cut(s) 35, 86
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 3 cut(s) 23, 142, 201
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 2 cut(s) 35, 86
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 10, 91
Bsp19I CCATGG 1 cut(s) 246
Bsp68I TCGCGA 1 cut(s) 101
BspANI GGCC 2 cut(s) 35, 86
BspCNI CTCAG 2 cut(s) 182, 205
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 206, 207
BssECI CCNNGG 3 cut(s) 105, 195, 246
BssMI GATC 2 cut(s) 10, 91
BssT1I CCWWGG 3 cut(s) 105, 195, 246
Bst6I CTCTTC 2 cut(s) 135, 141
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 4 cut(s) 169, 213, 227, 271
BstDSI CCRYGG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 101
BstKTI GATC 2 cut(s) 13, 94
BstMBI GATC 2 cut(s) 10, 91
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstUI CGCG 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 253
BsuRI GGCC 2 cut(s) 35, 86
BtgI CCRYGG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 180, 268
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 137, 247
CviJI RGCY 7 cut(s) 35, 86, 163, 244, 257, 277, 282
CviKI_1 RGCY 7 cut(s) 35, 86, 163, 244, 257, 277, 282
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 4 cut(s) 169, 213, 227, 271
DpnI GATC 2 cut(s) 12, 93
DpnII GATC 2 cut(s) 10, 91
Eam1104I CTCTTC 2 cut(s) 135, 141
EarI CTCTTC 2 cut(s) 135, 141
Eco130I CCWWGG 3 cut(s) 105, 195, 246
Eco147I AGGCCT 2 cut(s) 35, 86
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 205
EcoT14I CCWWGG 3 cut(s) 105, 195, 246
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 3 cut(s) 105, 195, 246
FaeI CATG 2 cut(s) 140, 250
FaiI YATR 6 cut(s) 69, 71, 90, 138, 248, 268
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 136, 246
FriOI GRGCYC 1 cut(s) 246
FspBI CTAG 2 cut(s) 279, 283
HaeIII GGCC 2 cut(s) 35, 86
Hin1II CATG 2 cut(s) 140, 250
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 96
HpaI GTTAAC 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 17, 100
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 3 cut(s) 17, 46, 211
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 4 cut(s) 169, 213, 227, 271
Hsp92II CATG 2 cut(s) 140, 250
KflI GGGWCCC 1 cut(s) 205
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 10, 91
LpnPI CCDG 2 cut(s) 30, 187
MaeI CTAG 2 cut(s) 279, 283
MalI GATC 2 cut(s) 12, 93
MboI GATC 2 cut(s) 10, 91
MboII GAAGA 4 cut(s) 5, 152, 158, 164
MhlI GDGCHC 1 cut(s) 246
MnlI CCTC 9 cut(s) 13, 25, 73, 76, 115, 136, 142, 178, 201
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 251
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 263
NcoI CCATGG 1 cut(s) 246
NdeII GATC 2 cut(s) 10, 91
NlaIII CATG 2 cut(s) 140, 250
NlaIV GGNNCC 2 cut(s) 206, 207
NruI TCGCGA 1 cut(s) 101
PceI AGGCCT 2 cut(s) 35, 86
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 96
PpuMI RGGWCCY 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 206, 207
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 2 cut(s) 10, 91
Sau96I GGNCC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 246
SetI ASST 6 cut(s) 107, 165, 193, 201, 222, 284
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 251
SseBI AGGCCT 2 cut(s) 35, 86
SspMI CTAG 2 cut(s) 279, 283
StuI AGGCCT 2 cut(s) 35, 86
StyI CCWWGG 3 cut(s) 105, 195, 246
TaqI TCGA 1 cut(s) 94
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 180, 268
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 2 cut(s) 180, 268
VpaK11BI GGWCC 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 2 cut(s) 279, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.