Rmu_sc0000338.1_g000010

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000338.1
OG0000176
Physical Location & Seq
Reverse (-)
22953 .. 23330
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000338.1_g000010.1.cds

Sequence Viewer

Length: 378 bp
ctgtacgaaagactatcatcgtacttagtggaaaaagaggcctatgatcgagtcgcgaccttagaggcagtcaatgaagaactctctgatcaggaacaagaagatgaggtagatattcagctcgctccggcagcactggacgatacacctcctaaggtcagagaccatactgagaaggtcaatcttggaacagcagatgagcctatggaagtggctatcagcgcttacttagagcctagcgagaaacagaggctcattgacttattactagaattcaaagactgtttcacggagaagtatgaagacatgcccggattgtcaccggacttggttttccatcaactgccaacactccttgacaagaggcctgtgaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

125

Amino Acids

14.31

Weight (kDa)

4.28

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 56
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 2 cut(s) 5, 23
AfeI AGCGCT 1 cut(s) 223
AgsI TTSAA 1 cut(s) 277
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 156
Aor51HI AGCGCT 1 cut(s) 223
AoxI GGCC 2 cut(s) 39, 365
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 272
AspLEI GCGC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 312
AxyI CCTNAGG 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 345
BclI TGATCA 1 cut(s) 88
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 2 cut(s) 237, 269
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 141
Bse21I CCTNAGG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 2 cut(s) 41, 367
BsiSI CCGG 3 cut(s) 128, 312, 323
BsmAI GTCTC 1 cut(s) 156
BsnI GGCC 2 cut(s) 41, 367
Bso31I GGTCTC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 46, 88
Bsp68I TCGCGA 1 cut(s) 56
BspANI GGCC 2 cut(s) 41, 367
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 141
BssMI GATC 2 cut(s) 46, 88
Bst4CI ACNGT 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 5 cut(s) 25, 61, 153, 171, 229
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 2 cut(s) 49, 91
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 2 cut(s) 46, 88
BstMWI GCNNNNNNNGC 2 cut(s) 131, 221
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 310
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 309
Bsu36I CCTNAGG 1 cut(s) 153
BsuRI GGCC 2 cut(s) 41, 367
BtsIMutI CAGTG 1 cut(s) 134
BtuMI TCGCGA 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 123
CfoI GCGC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 4, 22
CviAII CATG 1 cut(s) 307
CviJI RGCY 7 cut(s) 41, 121, 202, 215, 235, 253, 367
CviKI_1 RGCY 7 cut(s) 41, 121, 202, 215, 235, 253, 367
CviQI GTAC 2 cut(s) 4, 22
DdeI CTNAG 5 cut(s) 25, 61, 153, 171, 229
DpnI GATC 2 cut(s) 48, 90
DpnII GATC 2 cut(s) 46, 88
Eco147I AGGCCT 2 cut(s) 41, 367
Eco31I GGTCTC 1 cut(s) 156
Eco47III AGCGCT 1 cut(s) 223
Eco81I CCTNAGG 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 272
FaeI CATG 1 cut(s) 310
FaiI YATR 5 cut(s) 45, 168, 206, 300, 308
FatI CATG 1 cut(s) 306
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 2 cut(s) 237, 269
GlaI GCGC 1 cut(s) 223
GluI GCNGC 1 cut(s) 132
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 2 cut(s) 41, 367
HapII CCGG 3 cut(s) 128, 312, 323
HhaI GCGC 1 cut(s) 224
Hin1II CATG 1 cut(s) 310
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 1 cut(s) 51
HpaII CCGG 3 cut(s) 128, 312, 323
HphI GGTGA 1 cut(s) 312
Hpy188I TCNGA 2 cut(s) 88, 161
Hpy188III TCNNGA 2 cut(s) 55, 92
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 221
HpyF3I CTNAG 5 cut(s) 25, 61, 153, 171, 229
Hsp92II CATG 1 cut(s) 310
HspAI GCGC 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 2 cut(s) 46, 88
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 5 cut(s) 77, 122, 141, 325, 336
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 2 cut(s) 237, 269
MaeIII GTNAC 1 cut(s) 318
MalI GATC 2 cut(s) 48, 90
MboI GATC 2 cut(s) 46, 88
MboII GAAGA 3 cut(s) 89, 113, 314
MluCI AATT 1 cut(s) 272
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 6 cut(s) 31, 58, 100, 159, 243, 357
MspI CCGG 3 cut(s) 128, 312, 323
MspR9I CCNGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 131, 221
NciI CCSGG 1 cut(s) 312
NdeII GATC 2 cut(s) 46, 88
NlaIII CATG 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 318
NruI TCGCGA 1 cut(s) 56
NspI RCATGY 1 cut(s) 310
PceI AGGCCT 2 cut(s) 41, 367
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
RruI TCGCGA 1 cut(s) 56
RsaI GTAC 2 cut(s) 5, 23
RsaNI GTAC 2 cut(s) 4, 22
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 46, 88
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 312
SetI ASST 6 cut(s) 62, 111, 123, 151, 159, 180
Sse9I AATT 1 cut(s) 272
SseBI AGGCCT 2 cut(s) 41, 367
SspMI CTAG 2 cut(s) 237, 269
StuI AGGCCT 2 cut(s) 41, 367
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 284
TaqI TCGA 1 cut(s) 49
TasI AATT 1 cut(s) 272
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 318
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 318
TspDTI ATGAA 2 cut(s) 90, 315
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 141
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 310
XspI CTAG 2 cut(s) 237, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.