FvH4_2g35580

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000176
Physical Location & Seq
Reverse (-)
26229441 .. 26230617
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35580.t1

Sequence Viewer

Length: 654 bp
ATGGCCGCAGTTGAAAGCTCTATGCTGAACCTGCTGGCCTATTGGCATGAGAGGGCCGCCCATACTGGTGCGCCCATTAATTTGGTGGAATTTTTGTCTGAAAGTACACATGAGGACGAGATCCAAATGGAAGACCTCGGCCCTGCTCCGGCCGACAAGCTGCTTCCTAGTGAGTTTAAGGAGGAGTTGGTAGCTTTACTTAGGGAATATAAAGATTGTTTTGCTTGGGATTACCATGAAATGCCCAGCTTGGACCGGAGCTTTCATCGCCTCAACCCTCCAGCTAAACGTCCAAACCTCAATCGAGCCAAACCGCCTCGGCTAGTCCTCCACGGCTCCACCTCCTCGGCTAGTCCTCCTCCGCTAGCCTTACCGCCCGCCTCCTCCTCACCTCGGCGCCCGCCTCCTCCTCGCCTTGGCTCCCTCCTCGCCTCCTCCTCGCCTCACCTCGCCTCGGCTCCCTCCTCTCCTCACCTCGCCTCGCCCGCCTCCTCCTCGCCTCACCTCGTCTCGGCTCCCTCTTCGCCTTGGCGCCTTCCTCACCTCTACTTCCTCGCCTTGGCGCCTTCCTCACCTCACCCTCCTCGCCTCCTCCTAGTAATTAGTTGTTGCTGCTGCATATGTGATTATCTAGTTAAAATTGATGGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

218

Amino Acids

23.62

Weight (kDa)

6.58

Isoelectric Point (pI)

75.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 39
AccB1I GGYRCC 3 cut(s) 396, 531, 562
AciI CCGC 8 cut(s) 6, 57, 314, 362, 374, 378, 401, 486
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 2 cut(s) 3, 150
AcsI RAATTY 1 cut(s) 89
AcyI GRCGYC 3 cut(s) 397, 532, 563
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 6 cut(s) 148, 393, 416, 454, 511, 559
AgsI TTSAA 1 cut(s) 14
AluBI AGCT 6 cut(s) 18, 160, 194, 249, 261, 284
AluI AGCT 6 cut(s) 18, 160, 194, 249, 261, 284
Alw26I GTCTC 1 cut(s) 514
AlwI GGATC 1 cut(s) 115
AoxI GGCC 5 cut(s) 3, 36, 54, 139, 150
ApeKI GCWGC 3 cut(s) 160, 612, 615
ApoI RAATTY 1 cut(s) 89
AseI ATTAAT 1 cut(s) 78
AspLEI GCGC 4 cut(s) 73, 399, 534, 565
AspS9I GGNCC 3 cut(s) 54, 140, 253
AsuHPI GGTGA 7 cut(s) 381, 437, 464, 494, 533, 564, 569
AsuNHI GCTAGC 1 cut(s) 364
AvaII GGWCC 1 cut(s) 253
BanI GGYRCC 3 cut(s) 396, 531, 562
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 147, 599, 602
BccI CCATC 1 cut(s) 638
BceAI ACGGC 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 514
BfaI CTAG 6 cut(s) 168, 323, 351, 365, 596, 632
BfoI RGCGCY 3 cut(s) 400, 535, 566
BfuAI ACCTGC 1 cut(s) 39
BisI GCNGC 5 cut(s) 6, 57, 161, 613, 616
BlsI GCNGC 5 cut(s) 7, 58, 162, 614, 617
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 3 cut(s) 54, 140, 253
BmiI GGNNCC 7 cut(s) 337, 398, 421, 459, 516, 533, 564
BmtI GCTAGC 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 264
BsaHI GRCGYC 3 cut(s) 397, 532, 563
BsaJI CCNNGG 9 cut(s) 136, 317, 331, 345, 392, 415, 453, 527, 558
BsaWI WCCGGW 1 cut(s) 255
Bsc4I CCNNNNNNNGG 6 cut(s) 148, 393, 416, 454, 511, 559
Bse1I ACTGG 1 cut(s) 70
BseDI CCNNGG 9 cut(s) 136, 317, 331, 345, 392, 415, 453, 527, 558
BseLI CCNNNNNNNGG 6 cut(s) 148, 393, 416, 454, 511, 559
BseNI ACTGG 1 cut(s) 70
BseX3I CGGCCG 1 cut(s) 150
BseXI GCAGC 3 cut(s) 147, 599, 602
BseYI CCCAGC 1 cut(s) 245
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 5 cut(s) 5, 38, 56, 141, 152
BshNI GGYRCC 3 cut(s) 396, 531, 562
BsiEI CGRYCG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 149, 256
BslI CCNNNNNNNGG 6 cut(s) 148, 393, 416, 454, 511, 559
BsmAI GTCTC 1 cut(s) 514
BsmBI CGTCTC 1 cut(s) 514
BsnI GGCC 5 cut(s) 5, 38, 56, 141, 152
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 8 cut(s) 6, 57, 314, 362, 374, 378, 401, 486
BspANI GGCC 5 cut(s) 5, 38, 56, 141, 152
BspLI GGNNCC 7 cut(s) 337, 398, 421, 459, 516, 533, 564
BspMI ACCTGC 1 cut(s) 39
BspOI GCTAGC 1 cut(s) 368
BspPI GGATC 1 cut(s) 115
BspT107I GGYRCC 3 cut(s) 396, 531, 562
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 9 cut(s) 136, 317, 331, 345, 392, 415, 453, 527, 558
BssMI GATC 1 cut(s) 120
BssNI GRCGYC 3 cut(s) 397, 532, 563
BssT1I CCWWGG 3 cut(s) 415, 527, 558
Bst6I CTCTTC 1 cut(s) 526
BstACI GRCGYC 3 cut(s) 397, 532, 563
BstC8I GCNNGC 5 cut(s) 36, 366, 378, 401, 486
BstDEI CTNAG 1 cut(s) 200
BstDSI CCRYGG 1 cut(s) 331
BstH2I RGCGCY 3 cut(s) 400, 535, 566
BstHHI GCGC 4 cut(s) 73, 399, 534, 565
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 514
BstMBI GATC 1 cut(s) 120
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 3 cut(s) 31, 267, 485
BstV1I GCAGC 3 cut(s) 147, 599, 602
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 120
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 1 cut(s) 120
BstZI CGGCCG 1 cut(s) 150
BsuRI GGCC 5 cut(s) 5, 38, 56, 141, 152
BtgI CCRYGG 1 cut(s) 331
BtgZI GCGATG 1 cut(s) 251
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 5 cut(s) 36, 366, 378, 401, 486
CfoI GCGC 4 cut(s) 73, 399, 534, 565
Cfr13I GGNCC 3 cut(s) 54, 140, 253
Csp6I GTAC 1 cut(s) 105
CviAII CATG 3 cut(s) 47, 110, 236
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 1 cut(s) 200
DinI GGCGCC 3 cut(s) 398, 533, 564
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
EaeI YGGCCR 2 cut(s) 3, 150
EagI CGGCCG 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 526
EarI CTCTTC 1 cut(s) 526
EclXI CGGCCG 1 cut(s) 150
Eco130I CCWWGG 3 cut(s) 415, 527, 558
Eco47I GGWCC 1 cut(s) 253
Eco52I CGGCCG 1 cut(s) 150
EcoT14I CCWWGG 3 cut(s) 415, 527, 558
EgeI GGCGCC 3 cut(s) 398, 533, 564
EheI GGCGCC 3 cut(s) 398, 533, 564
ErhI CCWWGG 3 cut(s) 415, 527, 558
Esp3I CGTCTC 1 cut(s) 514
FaeI CATG 3 cut(s) 50, 113, 239
FaiI YATR 8 cut(s) 23, 48, 63, 111, 210, 237, 620, 622
FatI CATG 3 cut(s) 46, 109, 235
FauI CCCGC 3 cut(s) 385, 408, 493
FauNDI CATATG 1 cut(s) 620
Fnu4HI GCNGC 5 cut(s) 6, 57, 161, 613, 616
Fsp4HI GCNGC 5 cut(s) 6, 57, 161, 613, 616
FspBI CTAG 6 cut(s) 168, 323, 351, 365, 596, 632
GlaI GCGC 4 cut(s) 72, 398, 533, 564
GluI GCNGC 5 cut(s) 6, 57, 161, 613, 616
GsaI CCCAGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 264
HaeII RGCGCY 3 cut(s) 400, 535, 566
HaeIII GGCC 5 cut(s) 5, 38, 56, 141, 152
HapII CCGG 2 cut(s) 149, 256
HhaI GCGC 4 cut(s) 73, 399, 534, 565
Hin1I GRCGYC 3 cut(s) 397, 532, 563
Hin1II CATG 3 cut(s) 50, 113, 239
Hin6I GCGC 4 cut(s) 71, 397, 532, 563
HinP1I GCGC 4 cut(s) 71, 397, 532, 563
HpaII CCGG 2 cut(s) 149, 256
HphI GGTGA 7 cut(s) 381, 437, 464, 494, 533, 564, 569
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 545, 576
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 618
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 267, 485
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 289
Hsp92I GRCGYC 3 cut(s) 397, 532, 563
Hsp92II CATG 3 cut(s) 50, 113, 239
HspAI GCGC 4 cut(s) 71, 397, 532, 563
KasI GGCGCC 3 cut(s) 396, 531, 562
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 6 cut(s) 151, 258, 341, 425, 463, 520
LpnPI CCDG 8 cut(s) 20, 44, 51, 156, 162, 259, 269, 294
Lsp1109I GCAGC 3 cut(s) 147, 599, 602
MaeI CTAG 6 cut(s) 168, 323, 351, 365, 596, 632
MaeII ACGT 1 cut(s) 289
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 2 cut(s) 143, 513
MflI RGATCY 1 cut(s) 120
MluCI AATT 5 cut(s) 79, 89, 600, 639, 649
Mly113I GGCGCC 3 cut(s) 397, 532, 563
MseI TTAA 3 cut(s) 78, 177, 636
MslI CAYNNNNRTG 1 cut(s) 66
MspI CCGG 2 cut(s) 149, 256
MwoI GCNNNNNNNGC 3 cut(s) 31, 267, 485
NarI GGCGCC 3 cut(s) 397, 532, 563
NdeI CATATG 1 cut(s) 620
NdeII GATC 1 cut(s) 120
NheI GCTAGC 1 cut(s) 364
NlaIII CATG 3 cut(s) 50, 113, 239
NlaIV GGNNCC 7 cut(s) 337, 398, 421, 459, 516, 533, 564
NmeAIII GCCGAG 6 cut(s) 117, 298, 326, 373, 434, 491
PkrI GCNGC 5 cut(s) 7, 58, 162, 614, 617
PluTI GGCGCC 3 cut(s) 400, 535, 566
PshBI ATTAAT 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 245
PspN4I GGNNCC 7 cut(s) 337, 398, 421, 459, 516, 533, 564
PspPI GGNCC 3 cut(s) 54, 140, 253
PsuI RGATCY 1 cut(s) 120
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 3 cut(s) 78, 177, 636
SatI GCNGC 5 cut(s) 6, 57, 161, 613, 616
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 3 cut(s) 54, 140, 253
SfoI GGCGCC 3 cut(s) 398, 533, 564
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 66
Sse9I AATT 5 cut(s) 79, 89, 600, 639, 649
SsiI CCGC 8 cut(s) 6, 57, 314, 362, 374, 378, 401, 486
SspDI GGCGCC 3 cut(s) 396, 531, 562
SspMI CTAG 6 cut(s) 168, 323, 351, 365, 596, 632
StyI CCWWGG 3 cut(s) 415, 527, 558
TaiI ACGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 304
TasI AATT 5 cut(s) 79, 89, 600, 639, 649
TatI WGTACW 1 cut(s) 104
TauI GCSGC 2 cut(s) 8, 59
Tru1I TTAA 3 cut(s) 78, 177, 636
Tru9I TTAA 3 cut(s) 78, 177, 636
TseI GCWGC 3 cut(s) 160, 612, 615
TspDTI ATGAA 2 cut(s) 252, 254
VpaK11BI GGWCC 1 cut(s) 253
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XspI CTAG 6 cut(s) 168, 323, 351, 365, 596, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.