Rw1G007650

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000176
Physical Location & Seq
Forward (+)
16155763 .. 16156497
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G007650.1

Sequence Viewer

Length: 615 bp
ATGGATTACGACCTTCCAGAGGAAGGGATAGAGGCTTTCCATTCCTTGTACGAGAGGCTATCATCATACTTGGTGGAAAAAGAGGCCTATGACCGAGTCGCGACCTTAGAACTTGTTAATGAAGAGTTCTCTGACCAAGAAGACGCTTACTTAGAGCCTAGCGAGAAACGGAGGCTCGTCGACTTATTGTTGGAATTCAAGGACTGCTTCGCGGAAAAATACGAAGACATGCCAGGCCTATCACCAGACTTAGTATGCCACCAACTACCAACGTTGCCTGATAAGAGGCCTATGAAGCAAGAGCCGCGAAGAATGAACTCGGAAACCCAAGTTCTGGTCAAAGAGGAAGTCGAAAAGATGCACAAGTCGGGCATTATCAGGGTAGCCAAGTACAATCAGTGGCTGTCCAATATAGTGCCTGTTCGCAAGAAGAATGGCAAGATAAGGGTCTGCGTGGATTACAGAGACCTTAATTTGGCCACACCTAAAGACGTCTACCCCATGCCGGTTGCGGACATGTTGGTAGACGCAGTTGCAGGGCACGAACTATTATCTTTCATGGACGGCACAGCGGGATATCACCAAATTCCGGTCGCGGAGGAAGATAGACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

204

Amino Acids

23.65

Weight (kDa)

4.88

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 495
AccB7I CCANNNNNTGG 1 cut(s) 334
AccI GTMKAC 3 cut(s) 180, 495, 525
AccII CGCG 4 cut(s) 101, 212, 307, 596
AciI CCGC 5 cut(s) 212, 305, 512, 572, 596
AclI AACGTT 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 2 cut(s) 194, 585
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 2 cut(s) 50, 392
AfiI CCNNNNNNNGG 6 cut(s) 19, 23, 334, 475, 505, 589
AflIII ACRYGT 1 cut(s) 516
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 459
AlwNI CAGNNNCTG 1 cut(s) 403
AoxI GGCC 4 cut(s) 84, 235, 287, 477
ApoI RAATTY 2 cut(s) 194, 585
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
AsuHPI GGTGA 2 cut(s) 234, 572
BaeGI GKGCMC 1 cut(s) 543
BalI TGGCCA 1 cut(s) 479
BbsI GAAGAC 2 cut(s) 147, 231
BceAI ACGGC 1 cut(s) 580
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 459
BfaI CTAG 2 cut(s) 159, 613
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 348
BpiI GAAGAC 2 cut(s) 147, 231
BsaHI GRCGYC 1 cut(s) 492
BsaI GGTCTC 1 cut(s) 459
BsaWI WCCGGW 1 cut(s) 589
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 23, 334, 475, 505, 589
Bse118I RCCGGY 1 cut(s) 505
BseBI CCWGG 1 cut(s) 234
BseLI CCNNNNNNNGG 6 cut(s) 19, 23, 334, 475, 505, 589
BseSI GKGCMC 1 cut(s) 543
Bsh1236I CGCG 4 cut(s) 101, 212, 307, 596
Bsh1285I CGRYCG 1 cut(s) 594
BshFI GGCC 4 cut(s) 86, 237, 289, 479
BsiEI CGRYCG 1 cut(s) 594
BsiSI CCGG 2 cut(s) 506, 590
BslI CCNNNNNNNGG 6 cut(s) 19, 23, 334, 475, 505, 589
BsmAI GTCTC 1 cut(s) 459
BsnI GGCC 4 cut(s) 86, 237, 289, 479
Bso31I GGTCTC 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 543
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 5 cut(s) 212, 305, 512, 572, 596
BspANI GGCC 4 cut(s) 86, 237, 289, 479
BspFNI CGCG 4 cut(s) 101, 212, 307, 596
BspTNI GGTCTC 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 505
BssNI GRCGYC 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 492
BstDEI CTNAG 3 cut(s) 106, 151, 250
BstENI CCTNNNNNAGG 1 cut(s) 17
BstFNI CGCG 4 cut(s) 101, 212, 307, 596
BstMAI GTCTC 1 cut(s) 459
BstMCI CGRYCG 1 cut(s) 594
BstMWI GCNNNNNNNGC 2 cut(s) 295, 304
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 2 cut(s) 232, 520
BstSCI CCNGG 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 543
BstUI CGCG 4 cut(s) 101, 212, 307, 596
BstV2I GAAGAC 2 cut(s) 147, 231
BsuRI GGCC 4 cut(s) 86, 237, 289, 479
BtsIMutI CAGTG 1 cut(s) 404
BtuMI TCGCGA 1 cut(s) 101
CaiI CAGNNNCTG 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 505
CseI GACGC 2 cut(s) 152, 536
Csp6I GTAC 2 cut(s) 49, 391
CviAII CATG 4 cut(s) 229, 502, 517, 559
CviQI GTAC 2 cut(s) 49, 391
DdeI CTNAG 3 cut(s) 106, 151, 250
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco147I AGGCCT 3 cut(s) 86, 237, 289
Eco31I GGTCTC 1 cut(s) 459
Eco32I GATATC 1 cut(s) 578
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 232
EcoRV GATATC 1 cut(s) 578
FaeI CATG 4 cut(s) 232, 505, 520, 562
FaiI YATR 9 cut(s) 67, 90, 230, 256, 293, 413, 503, 518, 560
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 4 cut(s) 228, 501, 516, 558
FauI CCCGC 1 cut(s) 565
FblI GTMKAC 3 cut(s) 180, 495, 525
Fnu4HI GCNGC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 2 cut(s) 159, 613
GluI GCNGC 1 cut(s) 305
HaeIII GGCC 4 cut(s) 86, 237, 289, 479
HapII CCGG 2 cut(s) 506, 590
HgaI GACGC 2 cut(s) 152, 536
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 4 cut(s) 232, 505, 520, 562
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 96
HpaII CCGG 2 cut(s) 506, 590
HphI GGTGA 2 cut(s) 234, 572
Hpy166II GTNNAC 3 cut(s) 181, 496, 526
Hpy188I TCNGA 2 cut(s) 133, 322
Hpy188III TCNNGA 2 cut(s) 17, 100
Hpy8I GTNNAC 3 cut(s) 181, 496, 526
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 17, 23
HpyCH4IV ACGT 2 cut(s) 272, 492
HpyCH4V TGCA 2 cut(s) 361, 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 295, 304
HpyF3I CTNAG 3 cut(s) 106, 151, 250
HpySE526I ACGT 2 cut(s) 272, 492
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 4 cut(s) 232, 505, 520, 562
LweI GCATC 1 cut(s) 348
MaeI CTAG 2 cut(s) 159, 613
MaeII ACGT 2 cut(s) 272, 492
MboII GAAGA 6 cut(s) 134, 152, 236, 321, 442, 614
MhlI GDGCHC 1 cut(s) 543
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 3 cut(s) 194, 472, 585
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 8 cut(s) 13, 25, 48, 76, 165, 279, 337, 592
Mox20I TGGCCA 1 cut(s) 479
MscI TGGCCA 1 cut(s) 479
MseI TTAA 2 cut(s) 117, 471
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 2 cut(s) 506, 590
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 4 cut(s) 101, 212, 307, 596
MwoI GCNNNNNNNGC 2 cut(s) 295, 304
NlaIII CATG 4 cut(s) 232, 505, 520, 562
NruI TCGCGA 1 cut(s) 101
NspI RCATGY 2 cut(s) 232, 520
PceI AGGCCT 3 cut(s) 86, 237, 289
PciI ACATGT 1 cut(s) 516
PflFI GACNNNGTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 1 cut(s) 306
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PscI ACATGT 1 cut(s) 516
Psp1406I AACGTT 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 403
PsyI GACNNNGTC 1 cut(s) 95
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 2 cut(s) 50, 392
RsaNI GTAC 2 cut(s) 49, 391
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 117, 471
SatI GCNGC 1 cut(s) 305
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 543
SetI ASST 6 cut(s) 15, 107, 275, 471, 487, 495
SfaNI GCATC 1 cut(s) 348
Sse9I AATT 3 cut(s) 194, 472, 585
SseBI AGGCCT 3 cut(s) 86, 237, 289
SsiI CCGC 5 cut(s) 212, 305, 512, 572, 596
SspMI CTAG 2 cut(s) 159, 613
StuI AGGCCT 3 cut(s) 86, 237, 289
StyD4I CCNGG 1 cut(s) 232
TaiI ACGT 2 cut(s) 275, 495
TaqI TCGA 2 cut(s) 180, 351
TaqII GACCGA 1 cut(s) 108
TasI AATT 3 cut(s) 194, 472, 585
TatI WGTACW 1 cut(s) 390
TauI GCSGC 1 cut(s) 307
Tru1I TTAA 2 cut(s) 117, 471
Tru9I TTAA 2 cut(s) 117, 471
TscAI CASTG 1 cut(s) 404
TspDTI ATGAA 4 cut(s) 135, 308, 329, 547
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 1 cut(s) 404
Tth111I GACNNNGTC 1 cut(s) 95
Van91I CCANNNNNTGG 1 cut(s) 334
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 2 cut(s) 194, 585
XceI RCATGY 2 cut(s) 232, 520
XmiI GTMKAC 3 cut(s) 180, 495, 525
XspI CTAG 2 cut(s) 159, 613
ZraI GACGTC 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.