pycom12g20020

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
21672481 .. 21672855
375 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g20020.1

Sequence Viewer

Length: 375 bp
ATGGAACGTCTGCTGGCCCATTGGTACGCCATTACCAAGCAACCAAATTCCGGCATCAATTTAATCGAATTTTTGGCCGAAGCGGATAACGGCCCCGTTCTATCTTTTGATAAAGTTCAGGCCGCACCAGCCGAACTCGAAGACAATCGGCCCCAGGTTAATGACCCATTAGAAGAAGTTAATGTAGGCACGGCCGATGATCCTCGAACATTGTTTATCAGCGCGTTATTCCCACCGTCTATGAAGGTCGAACTCCGTAAGTTACTCCAGGAATTTAGAGATTGCTTCCCGTGGAACTACCATGAAATGCCAGGCCTCGATCGAAACCTTGTAGAGCATGAGCTACGCATCAAGGACGGGTGTAAGCCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

125

Amino Acids

14.23

Weight (kDa)

4.79

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 224
AciI CCGC 2 cut(s) 83, 123
AclWI GGATC 1 cut(s) 194
AcoI YGGCCR 2 cut(s) 75, 192
AcsI RAATTY 3 cut(s) 46, 68, 272
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 50
AjnI CCWGG 3 cut(s) 153, 267, 310
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
AlwI GGATC 1 cut(s) 194
AoxI GGCC 7 cut(s) 15, 75, 91, 120, 149, 192, 313
ApoI RAATTY 3 cut(s) 46, 68, 272
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 3 cut(s) 16, 92, 150
BbsI GAAGAC 1 cut(s) 147
BceAI ACGGC 2 cut(s) 106, 207
BciT130I CCWGG 3 cut(s) 155, 269, 312
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 3 cut(s) 155, 269, 312
BmgT120I GGNCC 3 cut(s) 16, 92, 150
BmiI GGNNCC 2 cut(s) 94, 152
BmrFI CCNGG 3 cut(s) 155, 269, 312
BmsI GCATC 2 cut(s) 63, 357
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 153, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 50
BseBI CCWGG 3 cut(s) 155, 269, 312
BseDI CCNNGG 2 cut(s) 153, 290
BseLI CCNNNNNNNGG 1 cut(s) 50
BseX3I CGGCCG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 224
Bsh1285I CGRYCG 2 cut(s) 195, 322
BshFI GGCC 7 cut(s) 17, 77, 93, 122, 151, 194, 315
BsiEI CGRYCG 2 cut(s) 195, 322
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 50
BsnI GGCC 7 cut(s) 17, 77, 93, 122, 151, 194, 315
Bsp143I GATC 2 cut(s) 199, 319
BspACI CCGC 2 cut(s) 83, 123
BspANI GGCC 7 cut(s) 17, 77, 93, 122, 151, 194, 315
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 2 cut(s) 94, 152
BspPI GGATC 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 153, 290
BssMI GATC 2 cut(s) 199, 319
Bst2UI CCWGG 3 cut(s) 155, 269, 312
Bst4CI ACNGT 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 15
BstDSI CCRYGG 1 cut(s) 290
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 2 cut(s) 202, 322
BstMBI GATC 2 cut(s) 199, 319
BstMCI CGRYCG 2 cut(s) 195, 322
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 3 cut(s) 155, 269, 312
BstSCI CCNGG 3 cut(s) 153, 267, 310
BstUI CGCG 1 cut(s) 224
BstV2I GAAGAC 1 cut(s) 147
BstZI CGGCCG 1 cut(s) 192
BsuRI GGCC 7 cut(s) 17, 77, 93, 122, 151, 194, 315
BtgI CCRYGG 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 3 cut(s) 16, 92, 150
Csp6I GTAC 1 cut(s) 25
CviAII CATG 2 cut(s) 302, 338
CviQI GTAC 1 cut(s) 25
DpnI GATC 2 cut(s) 201, 321
DpnII GATC 2 cut(s) 199, 319
EaeI YGGCCR 2 cut(s) 75, 192
EagI CGGCCG 1 cut(s) 192
EclXI CGGCCG 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 315
Eco52I CGGCCG 1 cut(s) 192
EcoRII CCWGG 3 cut(s) 153, 267, 310
FaeI CATG 2 cut(s) 305, 341
FaiI YATR 3 cut(s) 242, 303, 339
FatI CATG 2 cut(s) 301, 337
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
GlaI GCGC 1 cut(s) 223
GluI GCNGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 7 cut(s) 17, 77, 93, 122, 151, 194, 315
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 305, 341
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HpaII CCGG 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4IV ACGT 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 2 cut(s) 305, 341
HspAI GCGC 1 cut(s) 222
Kzo9I GATC 2 cut(s) 199, 319
LpnPI CCDG 9 cut(s) 64, 104, 140, 141, 167, 254, 281, 297, 324
LweI GCATC 2 cut(s) 63, 357
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 261
MalI GATC 2 cut(s) 201, 321
MboI GATC 2 cut(s) 199, 319
MboII GAAGA 2 cut(s) 152, 185
MluCI AATT 4 cut(s) 46, 58, 68, 272
MnlI CCTC 2 cut(s) 213, 326
MseI TTAA 3 cut(s) 62, 159, 180
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 3 cut(s) 155, 269, 312
MvaI CCWGG 3 cut(s) 155, 269, 312
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 2 cut(s) 199, 319
NlaIII CATG 2 cut(s) 305, 341
NlaIV GGNNCC 2 cut(s) 94, 152
PceI AGGCCT 1 cut(s) 315
PfoI TCCNGGA 1 cut(s) 267
PkrI GCNGC 1 cut(s) 124
Ple19I CGATCG 1 cut(s) 322
Psp6I CCWGG 3 cut(s) 153, 267, 310
PspGI CCWGG 3 cut(s) 153, 267, 310
PspN4I GGNNCC 2 cut(s) 94, 152
PspPI GGNCC 3 cut(s) 16, 92, 150
PvuI CGATCG 1 cut(s) 322
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SaqAI TTAA 3 cut(s) 62, 159, 180
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 199, 319
Sau96I GGNCC 3 cut(s) 16, 92, 150
ScrFI CCNGG 3 cut(s) 155, 269, 312
SetI ASST 5 cut(s) 10, 159, 249, 330, 345
SfaNI GCATC 2 cut(s) 63, 357
Sse9I AATT 4 cut(s) 46, 58, 68, 272
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 2 cut(s) 83, 123
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 3 cut(s) 153, 267, 310
TaaI ACNGT 1 cut(s) 237
TaiI ACGT 1 cut(s) 10
TaqI TCGA 6 cut(s) 66, 138, 205, 249, 318, 322
TasI AATT 4 cut(s) 46, 58, 68, 272
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 3 cut(s) 62, 159, 180
Tru9I TTAA 3 cut(s) 62, 159, 180
TspDTI ATGAA 2 cut(s) 257, 318
TspGWI ACGGA 1 cut(s) 245
XapI RAATTY 3 cut(s) 46, 68, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.