Rmu_sc0014482.1_g000002

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014482.1
OG0000176
Physical Location & Seq
Reverse (-)
9133 .. 9803
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014482.1_g000002.1.cds

Sequence Viewer

Length: 537 bp
atgtggaacagggtcacagacaaggcagaggtgattaaagcagaccctcaccctttccctgttttcgggaattacgtagatgccaggtactatttggagccaattactccgttgcaggttagtggcatcgataacaagggccgtcccacaggagtgacgacctctgagttgagatcctcgtatttagtggagaaagaggcctacaatcgagtcacgaccttagaagtggttagaaaagaaatatctgacagagaggaggagaaagaagaagaaatccaggtcgcgccagtagcactagatgacacccctccaaaggtcagggaccctattaagaaaatcaatctggggacagctgatgagcctatggaagtggctatcagcacatatttagagcctagcgagaaacagaggctcattgacttattgcgagaagacaaggattgctttgttgaaaaatacgaggatatgccaagcttatctccaaatttgttatgccaccagctaccaacgctgcctgataagaagcccgtgaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

178

Amino Acids

20.35

Weight (kDa)

4.89

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AccII CGCG 1 cut(s) 284
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 1 cut(s) 484
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 65, 313
AgsI TTSAA 1 cut(s) 452
AjnI CCWGG 2 cut(s) 83, 276
AleI CACNNNNGTG 1 cut(s) 152
AluBI AGCT 3 cut(s) 353, 474, 502
AluI AGCT 3 cut(s) 353, 474, 502
AlwI GGATC 1 cut(s) 168
AoxI GGCC 2 cut(s) 139, 198
ApeKI GCWGC 1 cut(s) 511
ApoI RAATTY 1 cut(s) 484
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 2 cut(s) 139, 322
AsuHPI GGTGA 2 cut(s) 41, 43
AvaII GGWCC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 498
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 2 cut(s) 85, 278
BfaI CTAG 2 cut(s) 296, 396
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 1 cut(s) 512
BlsI GCNGC 1 cut(s) 513
Bme1390I CCNGG 2 cut(s) 85, 278
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 139, 322
BmiI GGNNCC 3 cut(s) 99, 323, 324
BmrFI CCNGG 2 cut(s) 85, 278
BmsI GCATC 2 cut(s) 70, 135
BpiI GAAGAC 1 cut(s) 438
Bsa29I ATCGAT 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 76
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 313
Bse1I ACTGG 1 cut(s) 287
BseBI CCWGG 2 cut(s) 85, 278
BseCI ATCGAT 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 65, 313
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 287
BseRI GAGGAG 2 cut(s) 269, 272
BseXI GCAGC 1 cut(s) 498
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 2 cut(s) 141, 200
BshVI ATCGAT 1 cut(s) 129
BslFI GGGAC 3 cut(s) 129, 335, 361
BslI CCNNNNNNNGG 2 cut(s) 65, 313
BsmFI GGGAC 3 cut(s) 129, 335, 361
BsnI GGCC 2 cut(s) 141, 200
Bsp143I GATC 1 cut(s) 173
BspANI GGCC 2 cut(s) 141, 200
BspCNI CTCAG 1 cut(s) 157
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 3 cut(s) 99, 323, 324
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 1 cut(s) 168
BsrI ACTGG 1 cut(s) 287
BssMI GATC 1 cut(s) 173
Bst2UI CCWGG 2 cut(s) 85, 278
BstBAI YACGTR 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 165, 220
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 1 cut(s) 176
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 2 cut(s) 290, 508
BstNI CCWGG 2 cut(s) 85, 278
BstSCI CCNGG 2 cut(s) 83, 276
BstSNI TACGTA 1 cut(s) 76
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 498
BstV2I GAAGAC 1 cut(s) 438
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 2 cut(s) 141, 200
BsuTUI ATCGAT 1 cut(s) 129
BveI ACCTGC 1 cut(s) 106
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 2 cut(s) 139, 322
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 1 cut(s) 88
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 2 cut(s) 165, 220
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
Eco105I TACGTA 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 2 cut(s) 83, 276
FaiI YATR 4 cut(s) 365, 385, 467, 493
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FaqI GGGAC 3 cut(s) 129, 335, 361
Fnu4HI GCNGC 1 cut(s) 512
Fsp4HI GCNGC 1 cut(s) 512
FspBI CTAG 2 cut(s) 296, 396
GlaI GCGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 512
HaeIII GGCC 2 cut(s) 141, 200
HhaI GCGC 1 cut(s) 286
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 1 cut(s) 210
HphI GGTGA 2 cut(s) 41, 43
Hpy188I TCNGA 2 cut(s) 166, 247
Hpy188III TCNNGA 2 cut(s) 67, 214
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 508
HpyF3I CTNAG 2 cut(s) 165, 220
HpySE526I ACGT 1 cut(s) 75
HspAI GCGC 1 cut(s) 284
KflI GGGWCCC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 97
Lsp1109I GCAGC 1 cut(s) 498
LweI GCATC 2 cut(s) 70, 135
MaeI CTAG 2 cut(s) 296, 396
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 3 cut(s) 13, 154, 211
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MboII GAAGA 3 cut(s) 278, 281, 443
MflI RGATCY 1 cut(s) 173
MluCI AATT 3 cut(s) 70, 102, 484
MlyI GAGTC 1 cut(s) 219
MseI TTAA 2 cut(s) 36, 330
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 353
MspR9I CCNGG 2 cut(s) 85, 278
MvaI CCWGG 2 cut(s) 85, 278
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 290, 508
NdeII GATC 1 cut(s) 173
NlaIV GGNNCC 3 cut(s) 99, 323, 324
NmuCI GTSAC 3 cut(s) 13, 154, 211
OliI CACNNNNGTG 1 cut(s) 152
PceI AGGCCT 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PkrI GCNGC 1 cut(s) 513
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Ppu21I YACGTR 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 322
Psp6I CCWGG 2 cut(s) 83, 276
PspGI CCWGG 2 cut(s) 83, 276
PspN4I GGNNCC 3 cut(s) 99, 323, 324
PspPI GGNCC 2 cut(s) 139, 322
PspPPI RGGWCCY 1 cut(s) 322
PsuI RGATCY 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 36, 330
SatI GCNGC 1 cut(s) 512
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 2 cut(s) 139, 322
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 2 cut(s) 85, 278
SfaNI GCATC 2 cut(s) 70, 135
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 152
SnaBI TACGTA 1 cut(s) 76
Sse9I AATT 3 cut(s) 70, 102, 484
SseBI AGGCCT 1 cut(s) 200
SspMI CTAG 2 cut(s) 296, 396
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 83, 276
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 129, 208
TasI AATT 3 cut(s) 70, 102, 484
Tru1I TTAA 2 cut(s) 36, 330
Tru9I TTAA 2 cut(s) 36, 330
TseFI GTSAC 3 cut(s) 13, 154, 211
TseI GCWGC 1 cut(s) 511
Tsp45I GTSAC 3 cut(s) 13, 154, 211
TspGWI ACGGA 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 1 cut(s) 484
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XspI CTAG 2 cut(s) 296, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.