FvH4_2g06271

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000176
Physical Location & Seq
Forward (+)
5205713 .. 5206381
669 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06271.t1

Sequence Viewer

Length: 567 bp
ATGATCAACAAGGTCATGGTCGATACCGGTGCCGCGGTCAATGTTGTCACAACCCGTACCATAGGACTCCTAGACATCCCGCGCTCAATGATCCAAACCACGTCCTTAACAGTCAAGAACTTCACCGGGCAAGTGTCCAGAACCCTAGGCTTGCTATTCCTACGGGTCAAGGTCGGGCCAGCATCACGGGTTTACACTTTTTTCGTCGCCGAATGCGCTTCCTCTTACAGCATGATTCTTGGCCGAGATTGGATCCACAGAAGTTTTTGCGTGCCTTCCTCCATGCACCAAGAACTAATGATTTGGGACGCCGAGAACCGTGAAACGGTCATCATCAAAGCCGACCCGCGACCATTCTCTATCTCCGCCAACTTCAACGATGCCCGATATTATACTACAGACTTGGGTCCGTTGGATGTTCAAGGAGTCGATAACAAGGGCCGCCCATATGGAATAACGGCCTCCAATCTAACGCGATGGGGACTTACCCAGGCGAAGGACGATTTGCAACGTCCTCACACCATCGCGAGTCCCACACCCCGTTGCGATTATGGAATATGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

189

Amino Acids

20.98

Weight (kDa)

9.18

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AccII CGCG 5 cut(s) 35, 82, 349, 475, 527
AciI CCGC 6 cut(s) 33, 35, 80, 347, 366, 442
AclWI GGATC 3 cut(s) 85, 247, 260
AcoI YGGCCR 1 cut(s) 241
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 2 cut(s) 325, 496
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 2 cut(s) 376, 422
AjiI CACGTC 1 cut(s) 102
AjnI CCWGG 1 cut(s) 489
AlwI GGATC 3 cut(s) 85, 247, 260
AoxI GGCC 4 cut(s) 176, 241, 439, 459
AsiGI ACCGGT 1 cut(s) 26
AspA2I CCTAGG 1 cut(s) 145
AspLEI GCGC 2 cut(s) 84, 218
AspS9I GGNCC 3 cut(s) 176, 407, 439
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 115
AvaII GGWCC 1 cut(s) 407
AvrII CCTAGG 1 cut(s) 145
BamHI GGATCC 1 cut(s) 252
BanI GGYRCC 1 cut(s) 29
BccI CCATC 2 cut(s) 471, 530
BceAI ACGGC 1 cut(s) 474
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 1 cut(s) 491
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 127
BfaI CTAG 2 cut(s) 71, 146
BfmI CTRYAG 1 cut(s) 396
BisI GCNGC 2 cut(s) 33, 442
BlnI CCTAGG 1 cut(s) 145
BlsI GCNGC 2 cut(s) 34, 443
Bme1390I CCNGG 2 cut(s) 127, 491
Bme18I GGWCC 1 cut(s) 407
BmgBI CACGTC 1 cut(s) 102
BmgT120I GGNCC 3 cut(s) 176, 407, 439
BmiI GGNNCC 3 cut(s) 31, 254, 408
BmrFI CCNGG 2 cut(s) 127, 491
BmsI GCATC 2 cut(s) 191, 370
BoxI GACNNNNGTC 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 33, 145, 489
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 496
Bse118I RCCGGY 1 cut(s) 26
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 3 cut(s) 33, 145, 489
BseGI GGATG 2 cut(s) 75, 421
BseLI CCNNNNNNNGG 2 cut(s) 325, 496
Bsh1236I CGCG 5 cut(s) 35, 82, 349, 475, 527
BshFI GGCC 4 cut(s) 178, 243, 441, 461
BshNI GGYRCC 1 cut(s) 29
BshTI ACCGGT 1 cut(s) 26
BsiSI CCGG 2 cut(s) 27, 126
BslFI GGGAC 3 cut(s) 320, 495, 516
BslI CCNNNNNNNGG 2 cut(s) 325, 496
BsmFI GGGAC 3 cut(s) 320, 495, 516
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 4 cut(s) 178, 243, 441, 461
Bsp143I GATC 3 cut(s) 3, 90, 252
Bsp68I TCGCGA 1 cut(s) 527
BspACI CCGC 6 cut(s) 33, 35, 80, 347, 366, 442
BspANI GGCC 4 cut(s) 178, 243, 441, 461
BspFNI CGCG 5 cut(s) 35, 82, 349, 475, 527
BspLI GGNNCC 3 cut(s) 31, 254, 408
BspPI GGATC 3 cut(s) 85, 247, 260
BspT107I GGYRCC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 3 cut(s) 33, 145, 489
BssMI GATC 3 cut(s) 3, 90, 252
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 3 cut(s) 112, 320, 328
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 3 cut(s) 152, 180, 272
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 75, 421
BstFNI CGCG 5 cut(s) 35, 82, 349, 475, 527
BstHHI GCGC 2 cut(s) 84, 218
BstKTI GATC 3 cut(s) 6, 93, 255
BstMBI GATC 3 cut(s) 3, 90, 252
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 491
BstPAI GACNNNNGTC 1 cut(s) 405
BstSCI CCNGG 2 cut(s) 125, 489
BstSFI CTRYAG 1 cut(s) 396
BstUI CGCG 5 cut(s) 35, 82, 349, 475, 527
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BsuRI GGCC 4 cut(s) 178, 243, 441, 461
BtgI CCRYGG 1 cut(s) 33
BtgZI GCGATG 2 cut(s) 490, 508
BtrI CACGTC 1 cut(s) 102
BtsCI GGATG 2 cut(s) 75, 421
BtuMI TCGCGA 1 cut(s) 527
Cac8I GCNNGC 3 cut(s) 152, 180, 272
CfoI GCGC 2 cut(s) 84, 218
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 176, 407, 439
Cfr42I CCGCGG 1 cut(s) 36
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 57
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 3 cut(s) 16, 232, 283
CviJI RGCY 6 cut(s) 150, 178, 243, 341, 441, 461
CviKI_1 RGCY 6 cut(s) 150, 178, 243, 341, 441, 461
CviQI GTAC 1 cut(s) 57
DpnI GATC 3 cut(s) 5, 92, 254
DpnII GATC 3 cut(s) 3, 90, 252
EaeI YGGCCR 1 cut(s) 241
EciI GGCGGA 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 489
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 3 cut(s) 19, 235, 286
FaiI YATR 9 cut(s) 17, 62, 233, 284, 393, 448, 450, 552, 559
FaqI GGGAC 3 cut(s) 320, 495, 516
FatI CATG 3 cut(s) 15, 231, 282
FauI CCCGC 2 cut(s) 87, 354
FauNDI CATATG 1 cut(s) 448
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 33, 442
FokI GGATG 2 cut(s) 62, 428
Fsp4HI GCNGC 2 cut(s) 33, 442
FspBI CTAG 2 cut(s) 71, 146
GlaI GCGC 2 cut(s) 83, 217
GluI GCNGC 2 cut(s) 33, 442
HaeIII GGCC 4 cut(s) 178, 243, 441, 461
HapII CCGG 2 cut(s) 27, 126
HgaI GACGC 1 cut(s) 317
HhaI GCGC 2 cut(s) 84, 218
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 3 cut(s) 19, 235, 286
Hin6I GCGC 2 cut(s) 82, 216
HinP1I GCGC 2 cut(s) 82, 216
HinfI GANTC 4 cut(s) 66, 235, 426, 529
HpaII CCGG 2 cut(s) 27, 126
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 3 cut(s) 115, 138, 526
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 285, 490
HpyCH4III ACNGT 3 cut(s) 112, 320, 328
HpyCH4IV ACGT 2 cut(s) 101, 511
HpyCH4V TGCA 2 cut(s) 286, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpySE526I ACGT 2 cut(s) 101, 511
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 3 cut(s) 19, 235, 286
HspAI GCGC 2 cut(s) 82, 216
Ksp22I TGATCA 1 cut(s) 3
KspI CCGCGG 1 cut(s) 36
Kzo9I GATC 3 cut(s) 3, 90, 252
LpnPI CCDG 6 cut(s) 40, 139, 151, 192, 476, 503
LweI GCATC 2 cut(s) 191, 370
MaeI CTAG 2 cut(s) 71, 146
MaeII ACGT 2 cut(s) 101, 511
MaeIII GTNAC 1 cut(s) 46
MalI GATC 3 cut(s) 5, 92, 254
MboI GATC 3 cut(s) 3, 90, 252
MflI RGATCY 1 cut(s) 252
MlyI GAGTC 3 cut(s) 60, 435, 538
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 4 cut(s) 232, 289, 472, 525
MseI TTAA 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 2 cut(s) 27, 126
MspR9I CCNGG 2 cut(s) 127, 491
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 1 cut(s) 491
MvnI CGCG 5 cut(s) 35, 82, 349, 475, 527
MwoI GCNNNNNNNGC 1 cut(s) 215
NciI CCSGG 1 cut(s) 127
NdeI CATATG 1 cut(s) 448
NdeII GATC 3 cut(s) 3, 90, 252
NlaIII CATG 3 cut(s) 19, 235, 286
NlaIV GGNNCC 3 cut(s) 31, 254, 408
NmeAIII GCCGAG 2 cut(s) 269, 337
NmuCI GTSAC 1 cut(s) 46
NruI TCGCGA 1 cut(s) 527
PctI GAATGC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 235
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 2 cut(s) 34, 443
PleI GAGTC 3 cut(s) 60, 434, 537
PpsI GAGTC 3 cut(s) 60, 434, 537
PshAI GACNNNNGTC 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 489
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 3 cut(s) 31, 254, 408
PspPI GGNCC 3 cut(s) 176, 407, 439
PsuI RGATCY 1 cut(s) 252
RruI TCGCGA 1 cut(s) 527
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SacII CCGCGG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 2 cut(s) 33, 442
Sau3AI GATC 3 cut(s) 3, 90, 252
Sau96I GGNCC 3 cut(s) 176, 407, 439
SchI GAGTC 3 cut(s) 60, 435, 538
ScrFI CCNGG 2 cut(s) 127, 491
SetI ASST 4 cut(s) 15, 104, 174, 514
SfaNI GCATC 2 cut(s) 191, 370
SfcI CTRYAG 1 cut(s) 396
Sfr303I CCGCGG 1 cut(s) 36
SgrBI CCGCGG 1 cut(s) 36
SinI GGWCC 1 cut(s) 407
SsiI CCGC 6 cut(s) 33, 35, 80, 347, 366, 442
SspMI CTAG 2 cut(s) 71, 146
StyD4I CCNGG 2 cut(s) 125, 489
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 3 cut(s) 112, 320, 328
TaiI ACGT 2 cut(s) 104, 514
TaqI TCGA 2 cut(s) 21, 429
TauI GCSGC 2 cut(s) 35, 444
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspGWI ACGGA 1 cut(s) 399
VpaK11BI GGWCC 1 cut(s) 407
XmaJI CCTAGG 1 cut(s) 145
XspI CTAG 2 cut(s) 71, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.