FvH4_4g18553

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000176
Physical Location & Seq
Reverse (-)
22411321 .. 22415138
3818 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18553.t1

Sequence Viewer

Length: 357 bp
ATGAATTTTTTAGAGTTTATTTCAGAAGGTGTACAGGAAGACGAACTGAAGGTGAAGGACATCGGCCCAGCACCGGCCGAGTTGGAAGACGACCTCACTGAAACTGAGGATCCACTTGAAGAACTGAATTTAGGGACCACCGACGAGCCTCGGATAGTCCGGATTAGTAAGCTCTTGCCACCCAGGCTCAAAGAAGAAATGAAGAAGTTGTTGGTAGACAGGTTGACCGAGAAACATGAGGTTGGCCAAAGGTGGTTCGAAAGTGCAATAAGTGAGATGCAATTAGATCCGGCCGAGTCAACTATGATTATCTTGGATGAGTTGAATCAAGTCAAAAGGGCTAATTCATTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

119

Amino Acids

13.65

Weight (kDa)

4.39

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 216
AccIII TCCGGA 1 cut(s) 159
AclWI GGATC 3 cut(s) 104, 117, 281
AcoI YGGCCR 3 cut(s) 75, 244, 291
AcsI RAATTY 2 cut(s) 4, 127
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 119, 325
AjnI CCWGG 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
AlwI GGATC 3 cut(s) 104, 117, 281
Aor13HI TCCGGA 1 cut(s) 159
AoxI GGCC 4 cut(s) 64, 75, 244, 291
ApoI RAATTY 2 cut(s) 4, 127
AspS9I GGNCC 2 cut(s) 65, 135
AsuHPI GGTGA 1 cut(s) 64
AsuII TTCGAA 1 cut(s) 258
AvaII GGWCC 1 cut(s) 135
BalI TGGCCA 1 cut(s) 246
BamHI GGATCC 1 cut(s) 109
BbsI GAAGAC 2 cut(s) 45, 93
BciT130I CCWGG 1 cut(s) 184
BglI GCCNNNNNGGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 2 cut(s) 65, 135
BmiI GGNNCC 2 cut(s) 111, 136
BmrFI CCNGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 267
BpiI GAAGAC 2 cut(s) 45, 93
Bpu14I TTCGAA 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 149, 182
BsaWI WCCGGW 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse118I RCCGGY 1 cut(s) 73
BseAI TCCGGA 1 cut(s) 159
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 149, 182
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 96
BseX3I CGGCCG 2 cut(s) 75, 291
BseYI CCCAGC 1 cut(s) 67
Bsh1285I CGRYCG 2 cut(s) 78, 294
BshFI GGCC 4 cut(s) 66, 77, 246, 293
BsiEI CGRYCG 2 cut(s) 78, 294
BsiSI CCGG 3 cut(s) 74, 160, 290
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 4 cut(s) 66, 77, 246, 293
Bsp119I TTCGAA 1 cut(s) 258
Bsp13I TCCGGA 1 cut(s) 159
Bsp1407I TGTACA 1 cut(s) 31
Bsp143I GATC 2 cut(s) 109, 286
BspANI GGCC 4 cut(s) 66, 77, 246, 293
BspCNI CTCAG 1 cut(s) 97
BspEI TCCGGA 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 111, 136
BspPI GGATC 3 cut(s) 104, 117, 281
BspT104I TTCGAA 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 73
BsrGI TGTACA 1 cut(s) 31
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 149, 182
BssMI GATC 2 cut(s) 109, 286
Bst2UI CCWGG 1 cut(s) 184
BstAUI TGTACA 1 cut(s) 31
BstBI TTCGAA 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 2 cut(s) 112, 289
BstMBI GATC 2 cut(s) 109, 286
BstMCI CGRYCG 2 cut(s) 78, 294
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstV2I GAAGAC 2 cut(s) 45, 93
BstX2I RGATCY 2 cut(s) 109, 286
BstYI RGATCY 2 cut(s) 109, 286
BstZI CGGCCG 2 cut(s) 75, 291
BsuRI GGCC 4 cut(s) 66, 77, 246, 293
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 65, 135
Csp6I GTAC 1 cut(s) 32
CviAII CATG 1 cut(s) 236
CviJI RGCY 8 cut(s) 66, 77, 148, 172, 187, 246, 293, 341
CviKI_1 RGCY 8 cut(s) 66, 77, 148, 172, 187, 246, 293, 341
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 1 cut(s) 105
DpnI GATC 2 cut(s) 111, 288
DpnII GATC 2 cut(s) 109, 286
EaeI YGGCCR 3 cut(s) 75, 244, 291
EagI CGGCCG 2 cut(s) 75, 291
EclXI CGGCCG 2 cut(s) 75, 291
Eco47I GGWCC 1 cut(s) 135
Eco52I CGGCCG 2 cut(s) 75, 291
Eco57I CTGAAG 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 182
FaeI CATG 1 cut(s) 239
FaiI YATR 2 cut(s) 237, 305
FaqI GGGAC 1 cut(s) 148
FatI CATG 1 cut(s) 235
FblI GTMKAC 1 cut(s) 216
FokI GGATG 1 cut(s) 329
GsaI CCCAGC 1 cut(s) 71
HaeIII GGCC 4 cut(s) 66, 77, 246, 293
HapII CCGG 3 cut(s) 74, 160, 290
Hin1II CATG 1 cut(s) 239
HincII GTYRAC 2 cut(s) 225, 300
HindII GTYRAC 2 cut(s) 225, 300
HinfI GANTC 2 cut(s) 296, 325
HpaII CCGG 3 cut(s) 74, 160, 290
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 4 cut(s) 32, 217, 225, 300
Hpy188I TCNGA 2 cut(s) 25, 153
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 4 cut(s) 32, 217, 225, 300
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 3 cut(s) 20, 43, 49
HpyCH4V TGCA 2 cut(s) 266, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 1 cut(s) 239
Kpn2I TCCGGA 1 cut(s) 159
Kzo9I GATC 2 cut(s) 109, 286
LpnPI CCDG 8 cut(s) 20, 81, 87, 169, 173, 196, 205, 303
LweI GCATC 1 cut(s) 267
MalI GATC 2 cut(s) 111, 288
MboI GATC 2 cut(s) 109, 286
MboII GAAGA 5 cut(s) 50, 98, 131, 206, 214
MflI RGATCY 2 cut(s) 109, 286
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 4 cut(s) 4, 127, 281, 343
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 4 cut(s) 100, 104, 159, 232
Mox20I TGGCCA 1 cut(s) 246
MroI TCCGGA 1 cut(s) 159
MscI TGGCCA 1 cut(s) 246
Msp20I TGGCCA 1 cut(s) 246
MspI CCGG 3 cut(s) 74, 160, 290
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeII GATC 2 cut(s) 109, 286
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 2 cut(s) 111, 136
NmeAIII GCCGAG 2 cut(s) 103, 319
NspV TTCGAA 1 cut(s) 258
PfeI GAWTC 1 cut(s) 325
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 2 cut(s) 111, 136
PspPI GGNCC 2 cut(s) 65, 135
PsuI RGATCY 2 cut(s) 109, 286
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
Sau3AI GATC 2 cut(s) 109, 286
Sau96I GGNCC 2 cut(s) 65, 135
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 184
SetI ASST 7 cut(s) 31, 54, 96, 174, 224, 243, 254
SfaNI GCATC 1 cut(s) 267
SfuI TTCGAA 1 cut(s) 258
SinI GGWCC 1 cut(s) 135
Sse9I AATT 4 cut(s) 4, 127, 281, 343
StyD4I CCNGG 1 cut(s) 182
TaqI TCGA 1 cut(s) 258
TaqII GACCGA 1 cut(s) 242
TasI AATT 4 cut(s) 4, 127, 281, 343
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 1 cut(s) 325
TscAI CASTG 1 cut(s) 103
TspDTI ATGAA 3 cut(s) 17, 215, 336
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 2 cut(s) 4, 127
XmiI GTMKAC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.