Rroxscaffold_174G00435290

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000174
Physical Location & Seq
Reverse (-)
326609 .. 327321
713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_174G00435290.1

Sequence Viewer

Length: 549 bp
ATGTGGAATAGAGAAACGGACACGGCGGAAGTAGTCCCGAGCGGATCCCCGTCCGTTTCCGGTTCCGCAAATTATGTAGATGCCGTATACTATTTGGAACCTATCTCTCCATTGCAGGTTAGTGGCATCGTTGATAAGGGCCGCCCCACCGGGGGTGACGGCCTACGAAACCGGCACGGTGGGGTCTCACGCTCGCAAAAAGAAGGCTTGGAGCGACCCGGCCACGCCGATGAAGAGGAGGTACGAGTTCAGCTCGCTCCGGCGGAGTTGGACGATACACCGCCCAAGGTTAAAGACCCTACCGAGAAGGTCAACTCGGGTACCGTAAGTGAACCTATGGACGTATCTATTAGTGCTTACCTAGAGCCTAGCGAGAAACGAGAGGCTCATCGAACTATTGCTAGAGTTCAAGGATTGCTTTGCGGAGAAGTACGAGGGACATGCCCTACTGTCACCGTAATTGGTTTGTCATCAATTACCAACTCTTGCCGACAAGAGGCCCGTCAAATAGGAACCTCGACGAATGAACTCGAAACCCGTATTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

182

Amino Acids

19.63

Weight (kDa)

5.19

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
Acc65I GGTACC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 87
AciI CCGC 7 cut(s) 26, 42, 66, 142, 263, 281, 423
AclWI GGATC 2 cut(s) 39, 52
AcoI YGGCCR 1 cut(s) 220
AfaI GTAC 3 cut(s) 243, 322, 432
AfiI CCNNNNNNNGG 4 cut(s) 151, 152, 496, 543
AgsI TTSAA 1 cut(s) 410
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 2 cut(s) 39, 52
Ama87I CYCGRG 2 cut(s) 37, 316
AoxI GGCC 4 cut(s) 139, 160, 220, 498
Asp718I GGTACC 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 139, 499
AsuC2I CCSGG 2 cut(s) 151, 219
AsuHPI GGTGA 2 cut(s) 167, 445
AvaI CYCGRG 2 cut(s) 37, 316
BaeI ACNNNNGTAYC 2 cut(s) 304, 337
BamHI GGATCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 320
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BceAI ACGGC 3 cut(s) 39, 68, 175
BcgI CGANNNNNNTGC 2 cut(s) 423, 457
BcnI CCSGG 2 cut(s) 151, 219
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 3 cut(s) 362, 369, 402
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
Bme1390I CCNGG 2 cut(s) 151, 219
BmeT110I CYCGRG 2 cut(s) 37, 316
BmgT120I GGNCC 2 cut(s) 139, 499
BmiI GGNNCC 5 cut(s) 46, 64, 99, 322, 514
BmrFI CCNGG 2 cut(s) 151, 219
BmsI GCATC 2 cut(s) 70, 135
BplI GAGNNNNNCTC 2 cut(s) 237, 269
BpuMI CCSGG 2 cut(s) 151, 219
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 150, 285
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 152, 496, 543
Bse118I RCCGGY 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 150, 285
BseLI CCNNNNNNNGG 4 cut(s) 151, 152, 496, 543
BseMI GCAATG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 251
BshFI GGCC 4 cut(s) 141, 162, 222, 500
BshNI GGYRCC 1 cut(s) 320
BsiHKCI CYCGRG 2 cut(s) 37, 316
BsiSI CCGG 5 cut(s) 60, 150, 172, 219, 260
BslFI GGGAC 2 cut(s) 20, 451
BslI CCNNNNNNNGG 4 cut(s) 151, 152, 496, 543
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 20, 451
BsnI GGCC 4 cut(s) 141, 162, 222, 500
Bso31I GGTCTC 1 cut(s) 190
BsoBI CYCGRG 2 cut(s) 37, 316
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 7 cut(s) 26, 42, 66, 142, 263, 281, 423
BspANI GGCC 4 cut(s) 141, 162, 222, 500
BspLI GGNNCC 5 cut(s) 46, 64, 99, 322, 514
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 2 cut(s) 39, 52
BspT107I GGYRCC 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 190
BsrBI CCGCTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 171
BssECI CCNNGG 2 cut(s) 150, 285
BssMI GATC 1 cut(s) 44
BssNAI GTATAC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 285
Bst1107I GTATAC 1 cut(s) 88
Bst4CI ACNGT 4 cut(s) 179, 325, 451, 457
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 194, 255
BstKTI GATC 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 2 cut(s) 149, 217
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BstZ17I GTATAC 1 cut(s) 88
BsuRI GGCC 4 cut(s) 141, 162, 222, 500
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 194, 255
Cfr10I RCCGGY 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 139, 499
Csp6I GTAC 3 cut(s) 242, 321, 431
CviAII CATG 1 cut(s) 441
CviJI RGCY 8 cut(s) 141, 162, 207, 222, 253, 367, 386, 500
CviKI_1 RGCY 8 cut(s) 141, 162, 207, 222, 253, 367, 386, 500
CviQI GTAC 3 cut(s) 242, 321, 431
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
EciI GGCGGA 2 cut(s) 41, 278
Eco130I CCWWGG 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 190
Eco88I CYCGRG 2 cut(s) 37, 316
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 444
FaiI YATR 4 cut(s) 75, 88, 338, 442
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FaqI GGGAC 2 cut(s) 20, 451
FatI CATG 1 cut(s) 440
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 3 cut(s) 362, 369, 402
GluI GCNGC 1 cut(s) 142
HaeIII GGCC 4 cut(s) 141, 162, 222, 500
HapII CCGG 5 cut(s) 60, 150, 172, 219, 260
Hin1II CATG 1 cut(s) 444
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HpaII CCGG 5 cut(s) 60, 150, 172, 219, 260
HphI GGTGA 2 cut(s) 167, 445
Hpy166II GTNNAC 3 cut(s) 88, 313, 332
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 3 cut(s) 88, 313, 332
Hpy99I CGWCG 1 cut(s) 523
HpyAV CCTTC 2 cut(s) 197, 301
HpyCH4III ACNGT 4 cut(s) 179, 325, 451, 457
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 1 cut(s) 444
KpnI GGTACC 1 cut(s) 324
Kzo9I GATC 1 cut(s) 44
LmnI GCTCC 2 cut(s) 211, 262
LpnPI CCDG 6 cut(s) 73, 101, 163, 185, 232, 273
LweI GCATC 2 cut(s) 70, 135
MaeI CTAG 3 cut(s) 362, 369, 402
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 2 cut(s) 155, 451
MalI GATC 1 cut(s) 46
MbiI CCGCTC 1 cut(s) 42
MboI GATC 1 cut(s) 44
MboII GAAGA 1 cut(s) 245
MflI RGATCY 1 cut(s) 44
MluCI AATT 3 cut(s) 70, 459, 474
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 6 cut(s) 229, 232, 376, 428, 490, 526
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 5 cut(s) 60, 150, 172, 219, 260
MspR9I CCNGG 2 cut(s) 151, 219
NciI CCSGG 2 cut(s) 151, 219
NdeII GATC 1 cut(s) 44
NlaIII CATG 1 cut(s) 444
NlaIV GGNNCC 5 cut(s) 46, 64, 99, 322, 514
NmuCI GTSAC 2 cut(s) 155, 451
NspI RCATGY 1 cut(s) 444
PkrI GCNGC 1 cut(s) 143
PspN4I GGNNCC 5 cut(s) 46, 64, 99, 322, 514
PspPI GGNCC 2 cut(s) 139, 499
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 3 cut(s) 243, 322, 432
RsaNI GTAC 3 cut(s) 242, 321, 431
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 2 cut(s) 139, 499
ScrFI CCNGG 2 cut(s) 151, 219
SfaNI GCATC 2 cut(s) 70, 135
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 3 cut(s) 70, 459, 474
SsiI CCGC 7 cut(s) 26, 42, 66, 142, 263, 281, 423
SspMI CTAG 3 cut(s) 362, 369, 402
StyD4I CCNGG 2 cut(s) 149, 217
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 4 cut(s) 179, 325, 451, 457
TaiI ACGT 1 cut(s) 345
TaqI TCGA 3 cut(s) 391, 518, 531
TasI AATT 3 cut(s) 70, 459, 474
TauI GCSGC 1 cut(s) 144
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 2 cut(s) 155, 451
Tsp45I GTSAC 2 cut(s) 155, 451
TspDTI ATGAA 2 cut(s) 246, 540
TspGWI ACGGA 2 cut(s) 32, 43
XceI RCATGY 1 cut(s) 444
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 3 cut(s) 362, 369, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.