Rmu_sc0001898.1_g000006

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001898.1
OG0000176
Physical Location & Seq
Reverse (-)
13400 .. 13798
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001898.1_g000006.1.cds

Sequence Viewer

Length: 399 bp
atggattacgaccttctagaggatggaatagaggccttccattctttatacgaaaggctatcctcgtacttggtgggaaaagaggcctatgatcgagtcgcgaccttagagattgttaatgaagagttcaatgaccaagaagaggaagaagaagagattcagcttgctccaacagctttagacgattcacctccgaaggttagggatcctactgaaaaggtcaatcaaggaacaactgacgagcctatggaagtggctatcagcgctggaatacaagcattgcttcgtaaaaaaatacgaaggtatgcctggcctgtcaccagacttggtatgccatcagctgccaacactctccgacaagaggcctgtgaagtaagaactgcgaagaatgaactctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

132

Amino Acids

14.99

Weight (kDa)

4.46

Isoelectric Point (pI)

61.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 101
AclWI GGATC 2 cut(s) 200, 213
AfaI GTAC 1 cut(s) 68
AfeI AGCGCT 1 cut(s) 265
AfiI CCNNNNNNNGG 3 cut(s) 19, 142, 361
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 3 cut(s) 163, 176, 341
AluI AGCT 3 cut(s) 163, 176, 341
AlwI GGATC 2 cut(s) 200, 213
Aor51HI AGCGCT 1 cut(s) 265
AoxI GGCC 4 cut(s) 33, 84, 311, 363
ApeKI GCWGC 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 180, 310
BamHI GGATCC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 328
BccI CCATC 2 cut(s) 17, 343
BciT130I CCWGG 1 cut(s) 310
BfaI CTAG 1 cut(s) 17
BfoI RGCGCY 1 cut(s) 267
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 142, 361
Bse3DI GCAATG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 3 cut(s) 19, 142, 361
BseMI GCAATG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 4 cut(s) 35, 86, 313, 365
BslI CCNNNNNNNGG 3 cut(s) 19, 142, 361
BsnI GGCC 4 cut(s) 35, 86, 313, 365
Bsp143I GATC 2 cut(s) 91, 205
Bsp68I TCGCGA 1 cut(s) 101
BspANI GGCC 4 cut(s) 35, 86, 313, 365
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 2 cut(s) 200, 213
BsrDI GCAATG 1 cut(s) 278
BssMI GATC 2 cut(s) 91, 205
Bst2UI CCWGG 1 cut(s) 310
Bst6I CTCTTC 3 cut(s) 117, 135, 147
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 106
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 2 cut(s) 94, 208
BstMBI GATC 2 cut(s) 91, 205
BstMWI GCNNNNNNNGC 2 cut(s) 173, 263
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 4 cut(s) 35, 86, 313, 365
BtsCI GGATG 1 cut(s) 28
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 67
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 1 cut(s) 106
DpnI GATC 2 cut(s) 93, 207
DpnII GATC 2 cut(s) 91, 205
Eam1104I CTCTTC 3 cut(s) 117, 135, 147
EarI CTCTTC 3 cut(s) 117, 135, 147
Eco147I AGGCCT 3 cut(s) 35, 86, 365
Eco47III AGCGCT 1 cut(s) 265
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 308
FaiI YATR 5 cut(s) 49, 90, 248, 306, 332
FalI AAGNNNNNCTT 2 cut(s) 267, 299
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 265
GluI GCNGC 1 cut(s) 342
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 4 cut(s) 35, 86, 313, 365
HhaI GCGC 1 cut(s) 266
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 3 cut(s) 96, 157, 185
HphI GGTGA 2 cut(s) 180, 310
Hpy188I TCNGA 2 cut(s) 195, 356
Hpy188III TCNNGA 2 cut(s) 17, 100
HpyAV CCTTC 4 cut(s) 23, 46, 190, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 263
HpyF3I CTNAG 1 cut(s) 106
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 2 cut(s) 91, 205
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 6 cut(s) 252, 295, 322, 327, 334, 379
Lsp1109I GCAGC 1 cut(s) 328
MaeI CTAG 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 316
MalI GATC 2 cut(s) 93, 207
MboI GATC 2 cut(s) 91, 205
MboII GAAGA 6 cut(s) 134, 152, 158, 161, 164, 397
MflI RGATCY 1 cut(s) 205
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 2 cut(s) 194, 379
MnlI CCTC 7 cut(s) 13, 25, 73, 76, 136, 201, 355
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 173, 263
NdeII GATC 2 cut(s) 91, 205
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 316
NruI TCGCGA 1 cut(s) 101
PceI AGGCCT 3 cut(s) 35, 86, 365
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 157, 185
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 341
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 2 cut(s) 91, 205
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 310
SetI ASST 9 cut(s) 15, 107, 165, 178, 193, 201, 222, 305, 343
SseBI AGGCCT 3 cut(s) 35, 86, 365
SspMI CTAG 1 cut(s) 17
StuI AGGCCT 3 cut(s) 35, 86, 365
StyD4I CCNGG 1 cut(s) 308
TaqI TCGA 1 cut(s) 94
TfiI GAWTC 2 cut(s) 157, 185
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 135
XagI CCTNNNNNAGG 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.