Rmu_sc0001395.1_g000017

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001395.1
OG0000176
Physical Location & Seq
Reverse (-)
87417 .. 87782
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001395.1_g000017.1.cds

Sequence Viewer

Length: 366 bp
ctgtcatcatacttggtggaaaaagaggcctacgatcgagtcgcgaccttagaggtcgtcaatgaagagctttctgatcaggagcgagaggatgaaatagatattcagcttgctccggcggcgctagacaatacgcctcctaaagtcagagaccctactgaaaaggttaatctgggaacagtagacgagcctatgcaagtggctatcagtgcttacctagagcctagtgagaaacagaggctcactgatttgttattagagttcaaagattgcttcgcaaagaagtacgaagacatgcccggcctgtcaccgaacttggtttgccatcaactaccaacactccctgacaagaggcccgtgaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

121

Amino Acids

13.7

Weight (kDa)

4.47

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 183
AccII CGCG 1 cut(s) 44
AciI CCGC 1 cut(s) 119
AfaI GTAC 1 cut(s) 287
AgsI TTSAA 1 cut(s) 265
AluBI AGCT 2 cut(s) 70, 109
AluI AGCT 2 cut(s) 70, 109
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 3 cut(s) 27, 301, 353
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 354
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 297
BccI CCATC 1 cut(s) 333
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 3 cut(s) 125, 218, 225
BfoI RGCGCY 1 cut(s) 125
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
BseGI GGATG 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 44
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 3 cut(s) 29, 303, 355
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 116, 300
BsmAI GTCTC 1 cut(s) 144
BsnI GGCC 3 cut(s) 29, 303, 355
Bso31I GGTCTC 1 cut(s) 144
Bsp143I GATC 2 cut(s) 34, 76
Bsp68I TCGCGA 1 cut(s) 44
BspACI CCGC 1 cut(s) 119
BspANI GGCC 3 cut(s) 29, 303, 355
BspFNI CGCG 1 cut(s) 44
BspQI GCTCTTC 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 144
BssMI GATC 2 cut(s) 34, 76
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 37, 79
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 34, 76
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 119, 209
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 298
BstUI CGCG 1 cut(s) 44
BstV2I GAAGAC 1 cut(s) 297
BsuRI GGCC 3 cut(s) 29, 303, 355
BtsCI GGATG 1 cut(s) 97
BtsIMutI CAGTG 2 cut(s) 214, 243
BtuMI TCGCGA 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 111
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 354
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 295
CviJI RGCY 9 cut(s) 29, 70, 109, 190, 203, 223, 241, 303, 355
CviKI_1 RGCY 9 cut(s) 29, 70, 109, 190, 203, 223, 241, 303, 355
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 49
DpnI GATC 2 cut(s) 36, 78
DpnII GATC 2 cut(s) 34, 76
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco147I AGGCCT 1 cut(s) 29
Eco31I GGTCTC 1 cut(s) 144
FaeI CATG 1 cut(s) 298
FaiI YATR 3 cut(s) 10, 194, 296
FatI CATG 1 cut(s) 294
FbaI TGATCA 1 cut(s) 76
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 3 cut(s) 125, 218, 225
GlaI GCGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 3 cut(s) 29, 303, 355
HapII CCGG 2 cut(s) 116, 300
HhaI GCGC 1 cut(s) 124
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 1 cut(s) 39
HpaII CCGG 2 cut(s) 116, 300
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 76, 149
Hpy188III TCNNGA 2 cut(s) 43, 80
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 209
HpyF3I CTNAG 1 cut(s) 49
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 2 cut(s) 34, 76
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 2 cut(s) 82, 118
LpnPI CCDG 6 cut(s) 65, 129, 158, 313, 317, 357
MaeI CTAG 3 cut(s) 125, 218, 225
MaeIII GTNAC 1 cut(s) 306
MalI GATC 2 cut(s) 36, 78
MboI GATC 2 cut(s) 34, 76
MboII GAAGA 2 cut(s) 77, 302
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 6 cut(s) 19, 46, 82, 147, 231, 345
MseI TTAA 1 cut(s) 168
MspI CCGG 2 cut(s) 116, 300
MspR9I CCNGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 119, 209
NciI CCSGG 1 cut(s) 300
NdeII GATC 2 cut(s) 34, 76
NlaIII CATG 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 306
NruI TCGCGA 1 cut(s) 44
NspI RCATGY 1 cut(s) 298
PceI AGGCCT 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 60
PkrI GCNGC 1 cut(s) 121
Ple19I CGATCG 1 cut(s) 37
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 354
PvuI CGATCG 1 cut(s) 37
RruI TCGCGA 1 cut(s) 44
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 34, 76
Sau96I GGNCC 1 cut(s) 354
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 300
SetI ASST 6 cut(s) 50, 57, 72, 111, 168, 219
SseBI AGGCCT 1 cut(s) 29
SsiI CCGC 1 cut(s) 119
SspMI CTAG 3 cut(s) 125, 218, 225
StuI AGGCCT 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 37
TauI GCSGC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 2 cut(s) 214, 250
TseFI GTSAC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 2 cut(s) 78, 108
TspRI CASTG 2 cut(s) 214, 250
XceI RCATGY 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 3 cut(s) 125, 218, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.